HHsearch alignment for GI: 255764514 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.90 E-value=0.00014 Score=49.23 Aligned_cols=74 Identities=24% Similarity=0.256 Sum_probs=58.6
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHH-HHCCCEEEEEE
Q ss_conf 40621579999999998436689976998034468887999999999999730-59399980837986-50176179999
Q gi|255764514|r 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQVA-ARADRHFLVYK 504 (554)
Q Consensus 427 iaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqvA-a~a~~h~~v~K 504 (554)
T Consensus 136 ~LS~G~kqrv~la~al~----~~P~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~til~~sH~l~e~~~l~dri~vl~~ 211 (218)
T cd03266 136 GFSTGMRQKVAIARALV----HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHR 211 (218)
T ss_pred HCCCHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC
T ss_conf 27826889999999986----69989999798767699999999999999985799999989878999996999999989