HHsearch alignment for GI: 255764514 and conserved domain: cd03267
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.14 E-value=3e-05 Score=53.56 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=58.9
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEECHHHHHH-HCCCEEEEE
Q ss_conf 4062157999999999843668997699803446888799999999999973059--3999808379865-017617999
Q gi|255764514|r 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKI--QLLAVTHAPQVAA-RADRHFLVY 503 (554)
Q Consensus 427 iaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~~--Qvi~ITH~pqvAa-~a~~h~~v~ 503 (554)
T Consensus 153 ~LSgG~rqrv~ia~aL~----~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~~g~till~tH~l~ev~~~~Drv~vl~ 228 (236)
T cd03267 153 QLSLGQRMRAEIAAALL----HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred HCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEE
T ss_conf 69999999999999996----79999999798768899999999999999997389899998887899999799999998