HHsearch alignment for GI: 255764514 and conserved domain: cd03270
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.62 E-value=5.6e-05 Score=51.79 Aligned_cols=28 Identities=36% Similarity=0.653 Sum_probs=24.6
Q ss_pred EEEEEEEECCCC-EEEEECCCCCCHHHHH
Q ss_conf 899998873898-1899889997888999
Q gi|255764514|r 11 LIESLDIDFSAG-LSILSGDTGSGKSILL 38 (554)
Q Consensus 11 ~i~~~~i~f~~G-l~vItGetGaGKS~il 38 (554)
T Consensus 10 ~L~~Vsl~i~~Ge~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred CCCCEEEEECCCCEEEEECCCCCHHHHHH
T ss_conf 65674899859989999878996098983