HHsearch alignment for GI: 255764514 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.90 E-value=1.2e-05 Score=56.08 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=27.9
Q ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
Q ss_conf 99998873898-189988999788899999998
Q gi|255764514|r 12 IESLDIDFSAG-LSILSGDTGSGKSILLDALIL 43 (554)
Q Consensus 12 i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~ 43 (554)
T Consensus 11 L~~vsl~i~~G~~~aIiG~sGsGKSTLl~~~L~ 43 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred CCCEEEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 778588988999999987999869999999988