HHsearch alignment for GI: 255764514 and conserved domain: cd03274

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00  E-value=2.9e-35  Score=251.41  Aligned_cols=91  Identities=25%  Similarity=0.278  Sum_probs=87.3

Q ss_pred             CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHC
Q ss_conf             89983113544062157999999999843668997699803446888799999999999973059399980837986501
Q gi|255764514|r  417 RGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAARA  496 (554)
Q Consensus       417 ~g~~~~pl~kiaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~~Qvi~ITH~pqvAa~a  496 (554)
T Consensus       118 PgK~~k~is-~LSGGEKsLtAlALlFAi~~~kPsPFyvLDEVDAALD~~Nv~r~a~~ike~s~~aQFIVIThr~~tme~A  196 (212)
T cd03274         118 PKKSWKNIS-NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELA  196 (212)
T ss_pred             CCHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf             641334465-6275189999999999996428995589735642467888999999999847797699998588999851


Q ss_pred             CCEEEEEEEECC
Q ss_conf             761799996216
Q gi|255764514|r  497 DRHFLVYKTNKP  508 (554)
Q Consensus       497 ~~h~~v~K~~~~  508 (554)
T Consensus       197 D~L~GV~~~~~~  208 (212)
T cd03274         197 DRLVGIYKTNNC  208 (212)
T ss_pred             HHEEEEEEECCC
T ss_conf             517989973785