HHsearch alignment for GI: 255764514 and conserved domain: cd03277
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.64 E-value=6.5e-16 Score=123.87 Aligned_cols=70 Identities=26% Similarity=0.452 Sum_probs=63.3
Q ss_pred CCEEEEECCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCC------C--CCCCCCCCCEEEEEEEEECC
Q ss_conf 9259994227899998873898189988999788899999998714732------5--33112897258999999728
Q gi|255764514|r 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRG------D--GGLVRRHAEKGQVVAVFEIS 70 (554)
Q Consensus 1 L~~L~i~Nf~~i~~~~i~f~~Gl~vItGetGaGKS~ildAl~~~lG~r~------~--~~~Ir~g~~~a~Ve~~F~~~ 70 (554)
T Consensus 3 I~rI~l~NFmty~~~~~~~gp~lN~IiGpNGSGKSsIv~AI~lgLGG~p~~lgRa~~v~~fVK~G~~~~~iEIeL~~~ 80 (213)
T cd03277 3 IVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred EEEEEEEEEECCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 899999730011046995499757998899887899999999881898000452656999985787642899999659