HHsearch alignment for GI: 255764514 and conserved domain: cd03277
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.57 E-value=0.00012 Score=49.52 Aligned_cols=79 Identities=24% Similarity=0.244 Sum_probs=58.8
Q ss_pred EEEEECCCCCCCCHHH-HHHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEE
Q ss_conf 0110127899831135-440621579999999998436689976998034468887999999999999730---593999
Q gi|255764514|r 410 EFYVQTNRGENPGPLM-KLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSK---KIQLLA 485 (554)
Q Consensus 410 ~f~~s~n~g~~~~pl~-kiaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~---~~Qvi~ 485 (554)
T Consensus 108 eLLVKFRk~~~L~~L~~~~QSGGErsvst~~yllalQ~l~~~pFr~vDEINQgmD~~nEr~v~~~~v~~~~~~~~~QyFl 187 (213)
T cd03277 108 ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFL 187 (213)
T ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999985203555787787120558999999999977534992785343357981789999999999972799865899
Q ss_pred EEC
Q ss_conf 808
Q gi|255764514|r 486 VTH 488 (554)
Q Consensus 486 ITH 488 (554)
T Consensus 188 iTP 190 (213)
T cd03277 188 ITP 190 (213)
T ss_pred ECH
T ss_conf 870