HHsearch alignment for GI: 255764514 and conserved domain: cd03279

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

Probab=99.50  E-value=8.8e-14  Score=109.78  Aligned_cols=71  Identities=28%  Similarity=0.445  Sum_probs=60.4

Q ss_pred             CCEEEEECCEEE-EEEEEECCC----CEEEEECCCCCCHHHHHHHHHHHHCCCCC--------CCCCCCCCCEEEEEEEE
Q ss_conf             925999422789-999887389----81899889997888999999987147325--------33112897258999999
Q gi|255764514|r    1 MTRLSIYNIVLI-ESLDIDFSA----GLSILSGDTGSGKSILLDALILVTGGRGD--------GGLVRRHAEKGQVVAVF   67 (554)
Q Consensus         1 L~~L~i~Nf~~i-~~~~i~f~~----Gl~vItGetGaGKS~ildAl~~~lG~r~~--------~~~Ir~g~~~a~Ve~~F   67 (554)
T Consensus         3 ~~~L~l~nF~~y~g~~~IDF~~~~~~~lflI~G~nGsGKSTIlDAI~~aLYGk~~r~~~~~~~~~~~~~ge~~aeV~feF   82 (213)
T cd03279           3 PLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTF   82 (213)
T ss_pred             EEEEEEECCCCCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf             57999977504589717848767878889998899997889999999998388823366410002445678449999999


Q ss_pred             ECCC
Q ss_conf             7289
Q gi|255764514|r   68 EISH   71 (554)
Q Consensus        68 ~~~~   71 (554)
T Consensus        83 ~~g~   86 (213)
T cd03279          83 QLGG   86 (213)
T ss_pred             EECC
T ss_conf             9778