HHsearch alignment for GI: 255764514 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00015 Score=49.01 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=30.4
Q ss_pred CEEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 27899998873898-18998899978889999999871
Q gi|255764514|r 9 IVLIESLDIDFSAG-LSILSGDTGSGKSILLDALILVT 45 (554)
Q Consensus 9 f~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~~l 45 (554)
T Consensus 37 ~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr~i~GL~ 74 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEECCCEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 27977747588899999999899848999999997599