RPSBLAST alignment for GI: 255764514 and conserved domain: TIGR02169
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164
Score = 42.4 bits (100), Expect = 3e-04
Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 193 DELQALAVQPGE-ENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLER 251
ELQ L + + EL ++S++ + E ELS + D + I I + +LE+
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK---IGEIEKEIEQLEQ 730
Query: 252 KSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRK 311
+ ++ + L++ L+ ++ + + + E++ + I+ ++L +EE AL + +
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE---ALNDLEAR 787
Query: 312 YSVS-IDQLPELAKKMEEDLADISEG-NEKVVSLERVLYEARQAYDRVA 358
S S I ++ K+EE+++ I E L R+ E +
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836