RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] (554 letters) >gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. Length = 563 Score = 374 bits (961), Expect = e-104 Identities = 190/569 (33%), Positives = 302/569 (53%), Gaps = 25/569 (4%) Query: 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK 60 +T L I N LI L ++F GL++L+G+TG+GKS+++DAL L+ G R VR + Sbjct: 2 LTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAGASRVRSGENR 61 Query: 61 GQVVAVFEISHLPALEILFAEANLTLEKH----VILRRVQFPDGRTKAYVNDQVVSVNFM 116 V F L + +A E+ VILRR DGR++AY+N + VS + + Sbjct: 62 AVVEGRFTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSL 121 Query: 117 RAVGSLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQ 176 S L+++H QH + L R++LD++A + + LY+ W LK Q Sbjct: 122 LEFTSELLDLHGQHDQQLLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQ 181 Query: 177 EQKSS-SQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIA-------VELSSI 228 +++ +Q ++FL+F ++EL+ +QPGE+ L + ++ E++ L Sbjct: 182 QKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGD 241 Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288 +D S++ + ++ + L++ + A + +A E++ E+ Sbjct: 242 VDVQE-----GSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDEL 296 Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLY 348 ++D + L IEERL ++ + RKY S++++ E A+K++E+L + + +E + +LE + Sbjct: 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVD 356 Query: 349 EARQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSD-----KEDISP 403 + + D+ A +S R + A+ L K V E+ AL +E FTV I + K Sbjct: 357 KLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGA 416 Query: 404 DGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIG 463 G D+VEF N GE PL K+ASGGELSR +LALK+VL ++ TL+FDEVD G+ Sbjct: 417 YGADQVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVS 476 Query: 464 GAVADAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTP 523 G A AI +L QLS++ Q+L VTH PQVAA AD HF V K T T V L+ Sbjct: 477 GETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEGLDGRT---ATRVRPLSG 533 Query: 524 QERREEIARMLAGSHITEEARAAAEILLE 552 +ER E+ARMLAG ++ A A+ LLE Sbjct: 534 EERVAELARMLAGLEKSDLTLAHAQELLE 562 >gnl|CDD|182794 PRK10869, PRK10869, recombination and repair protein; Provisional. Length = 553 Score = 317 bits (815), Expect = 4e-87 Identities = 178/564 (31%), Positives = 301/564 (53%), Gaps = 27/564 (4%) Query: 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK 60 + +L+I N ++ L+IDF +G+++++G+TG+GKSI +DAL L GGR + +VR A + Sbjct: 2 LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRAEASMVRPGATR 61 Query: 61 GQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRTKAYVNDQVVSVNFMRAVG 120 + A F + PA + L +LRRV DGR++ ++N V ++ +R +G Sbjct: 62 ADLCARFSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELG 121 Query: 121 SLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQEQKS 180 LLI+IH QHA + LL + + +LD+YA+ L E+ Y+ W + L ++Q+Q Sbjct: 122 QLLIQIHGQHAHQLLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQ 181 Query: 181 SSQ-DVEFLRFSIDELQALAVQPGE------ENELVVMRSKILKQERIAVEL------SS 227 + L++ + EL A QPGE E + + ++L + A++L + Sbjct: 182 ERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVN 241 Query: 228 IMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSE 287 I+ + + +S + M +L + V D+L EA + +A E+ Sbjct: 242 ILSQLYSAKQLLSELIGMDSKL----SGVLDML-------EEALIQIQEASDELRHYLDR 290 Query: 288 IQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVL 347 + D LA +E+RL +++RK+ VS ++LP+ +++ E+ + + + + +L + Sbjct: 291 LDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAV 350 Query: 348 YEARQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISPDGID 407 + Q AQ + R ++AK L + + M L + + FT+++ D E +S DG D Sbjct: 351 EKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGAD 410 Query: 408 RVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVA 467 R+EF V TN G+ P+ K+ASGGELSR LA++++ + P L+FDEVD GI G A Sbjct: 411 RIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTA 470 Query: 468 DAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTPQERR 527 +G L+QL + Q++ VTH PQVA +HF V +K D ET++ L + R Sbjct: 471 AVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFV---SKETDGGMTETHMQPLDKKARL 527 Query: 528 EEIARMLAGSHITEEARAAAEILL 551 +E+AR+L GS +T A A+ LL Sbjct: 528 QELARLLGGSEVTRNTLANAKELL 551 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 42.4 bits (100), Expect = 3e-04 Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 9/169 (5%) Query: 193 DELQALAVQPGE-ENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLER 251 ELQ L + + EL ++S++ + E ELS + D + I I + +LE+ Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK---IGEIEKEIEQLEQ 730 Query: 252 KSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRK 311 + ++ + L++ L+ ++ + + + E++ + I+ ++L +EE AL + + Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE---ALNDLEAR 787 Query: 312 YSVS-IDQLPELAKKMEEDLADISEG-NEKVVSLERVLYEARQAYDRVA 358 S S I ++ K+EE+++ I E L R+ E + Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836 Score = 39.3 bits (92), Expect = 0.002 Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 60/377 (15%) Query: 17 IDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRR------HAEKGQVVAVFEIS 70 I FS G +++SG GSGKS + DA++ G + K Sbjct: 19 IPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNE--- 75 Query: 71 HLPALEILFA--EANLTLEKHVILRRVQFPDGRTKAY-VNDQVVSVNFMRAVGSLLIEIH 127 + + F + E V+ R DG+ Y +N Q V ++ EIH Sbjct: 76 --AYVTVTFKNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLS----------EIH 123 Query: 128 SQHADRSLL----------DVQG--------HRKILDSYADIDLSLCELGTLYRHWCCTA 169 A + DV RKI+D A + + Sbjct: 124 DFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKK----------E 173 Query: 170 DALKKYQEQKSSSQDVEFLRFSIDEL-QALAVQPGEENELVVMRSKILKQERIAVELSSI 228 AL +E + +++E L IDE Q L E + R + L +E+ E + Sbjct: 174 KAL---EELEEVEENIERLDLIIDEKRQQLERLRREREKA--ERYQALLKEKREYEGYEL 228 Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288 + + I L LE + ++ + + + L E ++ L + +I+ E Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288 Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLY 348 Q +E I E + ++ R + +L + +++ + A+I + ++ LER + Sbjct: 289 QLRVKE--KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346 Query: 349 EARQAYDRVAQDISTKR 365 E R+ D++ ++ + + Sbjct: 347 EERKRRDKLTEEYAELK 363 Score = 37.0 bits (86), Expect = 0.012 Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 52/351 (14%) Query: 176 QEQKSSSQDVEFLRFSIDELQAL---------AVQPGEENELVVMRSKILKQERIAVELS 226 Q+ + + E+L I ELQ +++ EN + E + L Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878 Query: 227 SIMDDFHKSSSPISVISSMLRRLERKSTEVP---DLLQKSISFLNEAQENLSDAQHEIER 283 + + + LR LERK E+ + +K +S L E L + EIE Sbjct: 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938 Query: 284 SFSEIQYDAQELANIE----ERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEK 339 E + +E ++E E + V++ + E EE L + E EK Sbjct: 939 PKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY----EEVLKRLDELKEK 994 Query: 340 VVSLERVLYEARQAYDRVAQDISTKRYQFAKMLE------KNVMAEMPA----LKLENVC 389 LE E + +R+ + KR F + E + AE+ L LEN Sbjct: 995 RAKLEE---ERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELSGGTGELILEN-- 1049 Query: 390 FTVNITSDKEDISPDGIDRVEFYVQTNRGENPGPLMKLA--SGGELSRFLLALKIVLVDQ 447 PD D ++ + P+ +L SGGE S L+ + Sbjct: 1050 -------------PD--DPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRY 1094 Query: 448 GSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAARADR 498 P FDEVD + G + + +++ + + Q + V+ + ADR Sbjct: 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADR 1145 Score = 32.0 bits (73), Expect = 0.45 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 11/136 (8%) Query: 242 ISSMLRRLERKSTEVPDL---LQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI 298 + + L+R S E+ DL + + +NE +E D EI++ +++ A +L+ Sbjct: 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467 Query: 299 EERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKV---VSLERVLYEARQA-Y 354 E+ L+ L+ + +L +L +++ E A E+V ++E VL + Q + Sbjct: 468 EQELYDLKEEYDRVE---KELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH 524 Query: 355 DRVAQDISTK-RYQFA 369 VAQ S RY A Sbjct: 525 GTVAQLGSVGERYATA 540 Score = 27.7 bits (62), Expect = 8.0 Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 3/119 (2%) Query: 269 EAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEE 328 E + L DA+ + + +EI E+ +E + R K ++ EL +++E+ Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL---TEEYAELKEELED 368 Query: 329 DLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLEN 387 A++ E +++ L + R+ +++ ++I+ + + ++ E+ L Sbjct: 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 39.0 bits (92), Expect = 0.003 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 2 TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRG-----DGGLVRR 56 TRLS+ + E LD++ S G+++L G+ G GK+ LL+A+ L+ GR D L+R Sbjct: 4 TRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHRTARDKELIRF 63 Query: 57 HAEKGQVVAVFEISHLP 73 AE + E Sbjct: 64 GAEAAVIHGRVEKGGRE 80 >gnl|CDD|162953 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. Length = 349 Score = 38.4 bits (90), Expect = 0.005 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 321 ELAKKMEEDLADISEGNEKVVSLERVLYEARQ--AYDRVAQDISTKRYQF-AKMLEKNVM 377 LAKK+E+ DI + L + + E + + AQ + K Y + E NVM Sbjct: 49 NLAKKIEDHFGDIRDAA----KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVM 104 Query: 378 AEMPAL----KLENVCFTVNITSDK 398 + L + +V VN+TSDK Sbjct: 105 GTVNLLEAIRAIGSVKAVVNVTSDK 129 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 37.7 bits (88), Expect = 0.009 Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 224 ELSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIER 283 EL +++ + + + L++ E+ D + ++ + E L E+E+ Sbjct: 596 ELEPFYNEYLELKDAEKELEREEKELKKLEEEL-DKAFEELAETEKRLEELRKELEELEK 654 Query: 284 SFSEIQYD--AQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVV 341 +SE +Y+ +E + L LRA + +++ + +K++E+L + + +++ Sbjct: 655 KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714 Query: 342 SLERVL 347 LE+ L Sbjct: 715 KLEKAL 720 Score = 29.6 bits (67), Expect = 2.0 Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 10/166 (6%) Query: 215 ILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENL 274 I + E I + + + I+ ISS L L + ++ +++ L E +E + Sbjct: 185 IKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE----LEELKEEI 240 Query: 275 SDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADIS 334 + + E+E + +++ +EER+ L+ + + +L EL +K EE + Sbjct: 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE 300 Query: 335 EGNEKVVSLERV------LYEARQAYDRVAQDISTKRYQFAKMLEK 374 E + L + L E + +++ K + ++ +K Sbjct: 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346 Score = 29.3 bits (66), Expect = 2.9 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 3 RLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILV 44 L I N +S ++F G++++ G GSGKS +L+A ILV Sbjct: 5 ELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEA-ILV 45 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 36.8 bits (85), Expect = 0.016 Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 58/311 (18%) Query: 205 ENELVVMRSKI--LKQERIAVE-LSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQ 261 ENE + +K +++ +I +E L +D++ K + I I L+ + + ++ D L+ Sbjct: 625 ENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684 Query: 262 KSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPE 321 KS L++A+ N + + IE + I + + +I E L E Sbjct: 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDINETL------------------E 726 Query: 322 LAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEKNVMAEMP 381 KK+++ + D L R+A+D+ M+ K+ M Sbjct: 727 SMKKIKKAIGD--------------LKRLREAFDKSG---------VPAMIRKSASQAMT 763 Query: 382 ALKLENVCFTVNITSDKEDISPDGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALK 441 + F N+ D D+ D F + +RG + L SGGE + AL+ Sbjct: 764 S-LTRKYLFEFNLDFDDIDVDQD------FNITVSRGGMVEGIDSL-SGGEKTAVAFALR 815 Query: 442 IVLVD--QGSIPTLVFDE----VDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAAR 495 + + L+ DE +D + D I Y LK S Q++ ++H ++ + Sbjct: 816 VAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875 Query: 496 ADRHFLVYKTN 506 AD + V K++ Sbjct: 876 ADVAYEVKKSS 886 Score = 30.6 bits (69), Expect = 0.96 Identities = 13/39 (33%), Positives = 27/39 (69%) Query: 3 RLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDAL 41 R+ + N + + +I+F G++I++G G+GKS ++DA+ Sbjct: 5 RIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAI 43 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 36.5 bits (85), Expect = 0.017 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488 SGG+ R LAL + + L+ DE + + + L+ L++ +L VTH Sbjct: 460 SGGQAQR--LALARAFLRDAPL--LLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTH 515 Query: 489 APQVAARADR 498 +A RADR Sbjct: 516 RLALAERADR 525 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 36.2 bits (84), Expect = 0.024 Identities = 33/199 (16%), Positives = 82/199 (41%), Gaps = 4/199 (2%) Query: 175 YQEQKSSSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQE--RIAVELSSIMDDF 232 E Q + LR + L+ + + E + + L +E + +L + ++ Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353 Query: 233 HKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDA 292 + + + + L LE + E+ + L+ S + + + ++ +EIER + ++ Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413 Query: 293 QELANIEERLFAL--RAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEA 350 +++ + L + + +L EL +++EE ++ E + L L EA Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473 Query: 351 RQAYDRVAQDISTKRYQFA 369 QA D ++++ + + Sbjct: 474 EQALDAAERELAQLQARLD 492 Score = 33.9 bits (78), Expect = 0.11 Identities = 39/214 (18%), Positives = 86/214 (40%), Gaps = 32/214 (14%) Query: 172 LKKYQEQKSSSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDD 231 LK + Q ++ + L+ + EL+ L+V+R + L++E ++ Sbjct: 202 LKSLERQAEKAERYKELKAELRELEL---------ALLVLRLEELREELEELQEE----- 247 Query: 232 FHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYD 291 + L L + E+ + L++ ++E +E + + Q E+ +EI Sbjct: 248 -------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300 Query: 292 AQELANIEERLFALRAMSRKYSVSIDQLP-----------ELAKKMEEDLADISEGNEKV 340 Q+ + ERL L + +++L EL +K+EE ++ ++ Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360 Query: 341 VSLERVLYEARQAYDRVAQDISTKRYQFAKMLEK 374 LE L E + + + + T R + A++ + Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQ 394 Score = 33.5 bits (77), Expect = 0.13 Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 2/170 (1%) Query: 171 ALKKYQEQKSSSQDVEFLRFSIDEL-QALAVQPGEENELVVMRSKILKQ-ERIAVELSSI 228 L++ +E + + +E L I EL +ALA E EL ++ K+ E ++ ++S++ Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731 Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288 D + + + + + +L ++ TE+ +++ L EA+E L++A+ EIE ++I Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791 Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNE 338 + +EL + E L LRA + L E + +E +A E Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841 Score = 30.4 bits (69), Expect = 1.2 Identities = 29/210 (13%), Positives = 71/210 (33%), Gaps = 16/210 (7%) Query: 176 QEQKSSSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKS 235 E + + + L + EL+A + E E + E +E + Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-----AQIEQL 794 Query: 236 SSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQEL 295 + + L L + T + + L + ++ + +E +I+ ++++ Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854 Query: 296 ANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLA-----------DISEGNEKVVSLE 344 ++ + L + + ++ L +EE LA ++ E K L Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914 Query: 345 RVLYEARQAYDRVAQDISTKRYQFAKMLEK 374 R L E R+ ++ + + + E+ Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDNLQER 944 >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional. Length = 569 Score = 35.6 bits (83), Expect = 0.035 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 11/98 (11%) Query: 280 EIERSFSEIQYDAQELANIEERLFALRAMSRKYSVS-----IDQLPELAKKMEEDLADIS 334 E + + EI L +IEE+LF ++ K+ I+++ L +EED+ I Sbjct: 68 EWRQKWDEI--VTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQIL 125 Query: 335 EGNEKVVSLE---RVLYE-ARQAYDRVAQDISTKRYQF 368 E ++++ E R E + Y + + + R+ F Sbjct: 126 EELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF 163 Score = 30.6 bits (70), Expect = 1.0 Identities = 25/133 (18%), Positives = 61/133 (45%), Gaps = 16/133 (12%) Query: 239 ISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI 298 + L + ++ E L++ I + ++ L++++ E R + +L ++ Sbjct: 312 SDTLPDFLEHAKEQNKE----LKEEIDRVKQSYT-LNESELESVRQLEK------QLESL 360 Query: 299 EERLFALR-AMSRK---YSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAY 354 E++ + ++ + YS ++L E+ K++EE + + +E + L + EAR+ Sbjct: 361 EKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL 420 Query: 355 DRVAQDIST-KRY 366 +R + KRY Sbjct: 421 ERYRNKLHEIKRY 433 >gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. Length = 559 Score = 35.6 bits (83), Expect = 0.038 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%) Query: 294 ELANIEERLFALRAMSRKYSVS-----IDQLPELAKKMEEDLADISEGNEKVVSLE---R 345 L +IEE LF ++ K+ I ++ EL +EED+ I E ++ E R Sbjct: 76 SLPDIEELLFEAEELNDKFRFLKAKKAIKEIEELLDTIEEDIEQILEELNELKESEEKNR 135 Query: 346 VLY-EARQAYDRVAQDISTKRYQFAKMLEK 374 E + Y + + + K + + L++ Sbjct: 136 KEVEELKDKYRELRKTLLAKSFSYGPALDE 165 Score = 31.0 bits (71), Expect = 0.93 Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 24/137 (17%) Query: 239 ISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI 298 I ++ L ++ + L + L ++ L++ + E R + +L + Sbjct: 308 IDKLTDFLEHAREQNKQ----LLLELDRLQQSYT-LNEDELETVRELEK------QLEEL 356 Query: 299 EERLFALR-AMSRK---YSVSIDQLPELAKKMEEDLADISEG----NEKVVSLERVLYEA 350 E + L ++ K YS ++L +++E+ L +I + +E + L + EA Sbjct: 357 EAQYDQLVERIAEKKVAYSELQEEL----EEIEKQLEEIEKEQEELSESLQGLRKDELEA 412 Query: 351 RQAYDRVAQDIST-KRY 366 R+ Q + KRY Sbjct: 413 REKLQEYRQKLHEIKRY 429 >gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated. Length = 740 Score = 33.2 bits (76), Expect = 0.16 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 4/70 (5%) Query: 303 FALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDIS 362 FA+ KY+ +I + P++ ++EED+ I+EG + + VL E+R+ ++V ++ Sbjct: 514 FAVVDALEKYAPTITK-PDMTSRLEEDMDKIAEGK---IKEDAVLEESREMLEQVFDELD 569 Query: 363 TKRYQFAKML 372 R + + L Sbjct: 570 KNREKIRESL 579 >gnl|CDD|161957 TIGR00611, recf, recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 365 Score = 33.5 bits (77), Expect = 0.16 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 2 TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDAL-ILVTGG 47 +RL + + +++D++ S G++++ G G GK+ LL+A+ L G Sbjct: 4 SRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGR 50 >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional. Length = 880 Score = 32.7 bits (75), Expect = 0.25 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 2 TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDA 40 R+ + N D+ G++++ G GSGKS LL+A Sbjct: 4 DRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEA 42 Score = 30.0 bits (68), Expect = 1.6 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 242 ISSMLRRLERKSTEVPDLLQK------SISFLNEAQENLSDAQHEIERSFSEIQYDAQEL 295 + + RLE E DLL + + +E L D E+ E + AQ Sbjct: 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAH 340 Query: 296 ANIEERLF--ALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQA 353 E L A R + ++ EL ++EE + + E++ LE + E R+ Sbjct: 341 NEEAESLREDADDLEERAEELR-EEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399 Query: 354 YD 355 + Sbjct: 400 FG 401 Score = 27.7 bits (62), Expect = 8.9 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 269 EAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEE 328 E +E ++ + E+E + ++ +E+ +EE + LR ++ + L +EE Sbjct: 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE---RFGDAPVDLGNAEDFLEE 416 Query: 329 DLADISEGNEKVVSLERVLYEARQA 353 + E E+ LE L AR+ Sbjct: 417 LREERDELREREAELEATLRTARER 441 >gnl|CDD|150100 pfam09321, DUF1978, Domain of unknown function (DUF1978). Members of this family are found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. Length = 241 Score = 32.5 bits (74), Expect = 0.26 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Query: 246 LRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFAL 305 L+ LER + D L+K S E ++ L DAQ E ER + YD +E+ +EERL AL Sbjct: 70 LKHLERTYEKALDRLEKQSS--KENKKVLQDAQREFERQSQDF-YD-KEIEEVEERLEAL 125 Query: 306 RAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAY 354 +A+ + S D+ E + + D+ + + ++ Y Sbjct: 126 QALYPEVSEREDET-EKQETVSSYARDLETALDHIEVEYVQCVREQEDY 173 >gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated. Length = 174 Score = 32.6 bits (75), Expect = 0.30 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 30/117 (25%) Query: 255 EVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSV 314 E + L+++ L EAQ+ L+ AQ E ER I+ DA+ A A+RA Sbjct: 61 EAEERLRQAAQALAEAQQKLAQAQQEAER----IRADAKARAE------AIRA------- 103 Query: 315 SIDQLPELAKKMEEDLADISEGNEKVVSLE--RVLYE-----ARQAYDRVAQDISTK 364 E+ K+ ED+A + + +S E RV+ + A A + + + Sbjct: 104 ------EIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPGR 154 >gnl|CDD|164820 PHA00520, PHA00520, packaging NTPase P4. Length = 330 Score = 31.8 bits (72), Expect = 0.52 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Query: 21 AGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEKGQ----VVAVFEISHLPAL 75 +G+ ++ G TGSGK+ LL+AL GG GD V R E + + VF L A+ Sbjct: 124 SGVEVVVGGTGSGKTPLLNALAPDVGG-GDKYAVIRWGEPLEGYDTDLHVFAALILAAM 181 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 31.6 bits (71), Expect = 0.55 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488 SGG+ R +A + L + L+ DE S I + AI + +L +I ++ V+H Sbjct: 155 SGGQQQRLTIARALALKPK----VLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSH 210 Query: 489 APQVAAR 495 PQ AR Sbjct: 211 NPQQVAR 217 >gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase. Length = 543 Score = 31.2 bits (70), Expect = 0.79 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 23/134 (17%) Query: 218 QERIAVELSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDA 277 E+I E S+IMD +H PI + R E K T++ D L IS +EA + L A Sbjct: 270 HEKIMRESSAIMDKYH---DPIIDERIKMWR-EGKRTQIEDFLDIFISIKDEAGQPLLTA 325 Query: 278 QHEIERSFSEIQYDAQE-LANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEG 336 EI+ + E+ A + +N E +A+ M K PE+ K E++ Sbjct: 326 D-EIKPTIKELVMAAPDNPSNAVE--WAMAEMINK--------PEILHKAMEEI------ 368 Query: 337 NEKVVSLERVLYEA 350 ++VV ER + E+ Sbjct: 369 -DRVVGKERFVQES 381 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 30.8 bits (70), Expect = 1.0 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVF-DEVDSGIGGAVADAIGYRLKQLSK--KIQLLA 485 SGGE R +A+ LV+Q P+LV DE + A I + +L++ L Sbjct: 143 SGGERQR--VAIARALVNQ---PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLV 197 Query: 486 VTHAPQVAARADRHF 500 VTH ++A + DR Sbjct: 198 VTHDLELAKKLDRVL 212 >gnl|CDD|150847 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). Length = 274 Score = 30.7 bits (70), Expect = 1.0 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Query: 25 ILSGDTGSGKSILLDALILVTGGRGDGGLV 54 +L+G+ GSGKS+LL + G +V Sbjct: 27 VLTGERGSGKSVLL--AQAMAYALTQGWVV 54 >gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated. Length = 822 Score = 30.7 bits (70), Expect = 1.1 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 320 PELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEKNVMAE 379 E+ ++E D+ I +G +K E V E+R+ + ++ KR + L ++ AE Sbjct: 539 EEMTAQLEADMQAIEDGKKK---KEDVTEESREMLKEILSELKEKRKEIGDHLAGSLKAE 595 Query: 380 MPALK 384 +LK Sbjct: 596 NRSLK 600 >gnl|CDD|140251 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional. Length = 381 Score = 30.5 bits (69), Expect = 1.2 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 32/108 (29%) Query: 351 RQAYDRVAQ-------DISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISP 403 R+AY ++A+ KRY K EK + E + T+ + Sbjct: 299 RKAYAQMAEKGGTTTAAALEKRYDLLKAFEKKTLNEQEPVMQ---------TAFEMSDEL 349 Query: 404 DGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIP 451 DG F+ G+ P P G E+ F L QG IP Sbjct: 350 DGETEQSFF-----GKGPAP------GNEMEFFQS-----LAQQGGIP 381 >gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP. Length = 1192 Score = 30.4 bits (69), Expect = 1.3 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 7/103 (6%) Query: 267 LNEAQENLSDAQHEIERSFSEI-------QYDAQELANIEERLFALRAMSRKYSVSIDQL 319 L + ++ ++E+E E+ +EL +E AL + + ++ Sbjct: 431 LEALKLEFNEEEYELELRLGELKQRLDSATATPEELEQLEINDAALEKAQEEQEAARAEV 490 Query: 320 PELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDIS 362 +L ++ + E E + ER L + RQA + +S Sbjct: 491 EQLQSELRQLRKRRDEALEALQRAERRLLQLRQALQELELQLS 533 Score = 29.6 bits (67), Expect = 2.0 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 26/134 (19%) Query: 242 ISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEER 301 + LR L+ + E D L + IS N L + E++ E Q D + +IE Sbjct: 291 LRFQLRTLDDEWKEARDELNQEISAANAD---LEADRSELDLL--EDQKDKFQDKDIE-- 343 Query: 302 LFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDI 361 + +DQLP+ ++EE A + K ++R Y+R Q I Sbjct: 344 ---------QLKADLDQLPQWQSELEEVEARLDLLTGKHQDIQR-------KYERRKQKI 387 Query: 362 STKRYQFAKMLEKN 375 Q + LEKN Sbjct: 388 KE---QLERDLEKN 398 >gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes. Length = 494 Score = 30.3 bits (68), Expect = 1.5 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Query: 187 FLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSML 246 +L +I ++ L + E L +++ + ++ER+ ++ H+ P+++IS+ + Sbjct: 240 YLLLTIADISNLR-EEQERARLSALQALMAEEERLEAIRETLSAAIHRLQGPMNLISAAI 298 Query: 247 RRLERKSTE-----VPDLLQKSISFLNEAQENL------SDAQHEIERSFSEIQYDAQEL 295 L+R+ + +LQ+++S E E L S + + + ++I D L Sbjct: 299 SVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIPQSPQEIVVPVNLNQILRDVITL 358 Query: 296 ANIEERLFA 304 + RL A Sbjct: 359 ST--PRLLA 365 >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional. Length = 1047 Score = 29.8 bits (67), Expect = 1.7 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 6/33 (18%) Query: 17 IDFSA------GLSILSGDTGSGKSILLDALIL 43 IDF+A GL ++G TG+GK+ LLDA+ L Sbjct: 20 IDFTAEPFASNGLFAITGPTGAGKTTLLDAICL 52 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 29.6 bits (66), Expect = 2.1 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488 SGG+ R +A + + L+FDE S + +I + L K+ +L VTH Sbjct: 163 SGGQQQRLCIARALATDPE----ILLFDEPTSALDPIATASIEELISDLKNKVTILIVTH 218 Query: 489 APQVAAR 495 Q AAR Sbjct: 219 NMQQAAR 225 >gnl|CDD|115287 pfam06617, M-inducer_phosp, M-phase inducer phosphatase. This family represents a region within eukaryotic M-phase inducer phosphatases (EC:3.1.3.48), which also contain the pfam00581 domain. These proteins are involved in the control of mitosis. Length = 258 Score = 29.2 bits (65), Expect = 2.6 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 210 VMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLER-KSTEVPDLLQ--KSISF 266 VM+ +QE L S F S P S+ +L+R+ER + P ++ KS S Sbjct: 172 VMKLT--EQEEKDNILLSRCRLFRSPSMPESLTRPILKRVERPLDEDTPVKVKRRKSSSS 229 Query: 267 LNEAQENLSDAQHEIERSFS 286 E + + + + RS S Sbjct: 230 PVEEKLEGLEPKKRVLRSKS 249 >gnl|CDD|180226 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional. Length = 318 Score = 29.4 bits (67), Expect = 2.7 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Query: 22 GLSILSGDTGSGKSILLD--ALILVTGGRGDGGLVRRHAEKGQVVAV 66 G ++ GDT G + + A+ V GGR L R A+ G +VAV Sbjct: 114 GAELIGGDTTRGPDLSISVTAIGDVPGGRA---LRRSGAKPGDLVAV 157 >gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional. Length = 1113 Score = 29.1 bits (66), Expect = 2.9 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 246 LRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFAL 305 LR+LE + + D LQ + + L E L Q + ER+ + + ++Q L I L Sbjct: 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG 182 Query: 306 RAMSRKYSVS-IDQL 319 + + S L Sbjct: 183 KVGGKALRPSQRVLL 197 >gnl|CDD|148076 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal proteins are both required for correct metaphase check-pointing during mitosis. These proteins bind to the centromere/kinetochore. Length = 571 Score = 29.2 bits (66), Expect = 2.9 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 242 ISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQE-LANIEE 300 IS +L ++E EV ++ K S + N+S A+ + R S + D + LA+ Sbjct: 16 ISRLLSKVEEIKEEVRAMINKKYS---DFLPNMSSAEELLSRV-SSLSEDISDLLASEVS 71 Query: 301 RLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD 360 + +V++++L EL +++EE + L + L + +A + V + Sbjct: 72 NEIL-----QDLNVAVEELAELKRQLEE--------KILGLDLLKKLLKIHEALEEVNEA 118 Query: 361 ISTKRYQF-AKMLEK 374 + K Y A +LEK Sbjct: 119 LKGKDYLKAADLLEK 133 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 29.3 bits (66), Expect = 2.9 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Query: 474 LKQLSKKIQ-LLAVTHAPQVAARADR 498 L QL + ++ VTH PQVAA+A+R Sbjct: 187 LHQLRDRGHTVIIVTHDPQVAAQAER 212 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 29.1 bits (66), Expect = 3.1 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 17/77 (22%) Query: 429 SGGELSRFLLA---LK---IVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482 SGGE R LA LK ++L D+ PT D + D + L +L+ + + Sbjct: 136 SGGEQQRVALARAILKDPPLILADE---PTGSLDPKNR-------DEVLDLLLELNDEGK 185 Query: 483 -LLAVTHAPQVAARADR 498 ++ VTH P+VA +ADR Sbjct: 186 TIIIVTHDPEVAKQADR 202 >gnl|CDD|178502 PLN02914, PLN02914, hexokinase. Length = 490 Score = 29.1 bits (65), Expect = 3.1 Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 324 KKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD 360 +KMEED + G VV+++ LYE Y R QD Sbjct: 417 EKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQD 453 >gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional. Length = 482 Score = 29.0 bits (65), Expect = 3.4 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 408 RVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVA 467 R+ +Y+Q + E+P PL L+ LKI + + V + + AV Sbjct: 219 RLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVT 278 Query: 468 --DAIGYRLKQLSK 479 G+ + +L + Sbjct: 279 FLREQGHEVVELEE 292 >gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed. Length = 575 Score = 28.6 bits (65), Expect = 3.9 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Query: 140 GHRKI----LDSYADIDLSLCELGTLYRH 164 GH I L SY D+ L L E GT+YR+ Sbjct: 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRY 300 >gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein; Provisional. Length = 2722 Score = 28.6 bits (64), Expect = 4.1 Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Query: 252 KSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI-----EERLFALR 306 KST + +Q ++ + N+ + + EIE ++ Q ++++ I + L L Sbjct: 1528 KSTIAYETIQYNLGRVKHNLLNILNIKDEIETILNKAQDLMRDISKISKIVENKNLENLN 1587 Query: 307 AMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYD 355 Y +D + + + ME + ++E V ++E+ L + ++ Y+ Sbjct: 1588 DKEADYVKYLDNILKEKQLMEAEYKKLNEIYSDVDNIEKELKKHKKNYE 1636 >gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed. Length = 298 Score = 28.6 bits (65), Expect = 4.4 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 24 SILSGDTGSGKSILLDALI 42 ++L+G +G GKS LL+AL Sbjct: 167 TVLAGQSGVGKSTLLNALA 185 >gnl|CDD|178723 PLN03181, PLN03181, glycosyltransferase; Provisional. Length = 453 Score = 28.6 bits (64), Expect = 4.5 Identities = 9/13 (69%), Positives = 9/13 (69%) Query: 48 RGDGGLVRRHAEK 60 R D L RRHAEK Sbjct: 347 REDATLRRRHAEK 359 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 28.4 bits (63), Expect = 4.5 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488 SGG+ R +A + + S L+ DE S + + + +L K ++ VTH Sbjct: 148 SGGQQQRLCIARAMAV----SPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTH 203 Query: 489 APQVAAR-ADRHFLVYKTN--KPDDTQRIET 516 Q AAR +D+ Y + DDT++I T Sbjct: 204 NMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 28.7 bits (64), Expect = 4.7 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 16/73 (21%) Query: 429 SGGELSRFLLAL------KIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482 SGG+ R ++A KI+L+D+ PT D V G A + + + LK K+ Sbjct: 151 SGGQRQRLVIARALAMKPKILLMDE---PTANIDPV----GTAKIEELLFELK---KEYT 200 Query: 483 LLAVTHAPQVAAR 495 ++ VTH+P AAR Sbjct: 201 IVLVTHSPAQAAR 213 >gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). Length = 372 Score = 28.6 bits (64), Expect = 4.8 Identities = 11/22 (50%), Positives = 17/22 (77%) Query: 20 SAGLSILSGDTGSGKSILLDAL 41 +AGL ++ G+TGSGKS L ++ Sbjct: 148 AAGLGLICGETGSGKSTLAASI 169 >gnl|CDD|162881 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). Length = 432 Score = 28.3 bits (63), Expect = 5.1 Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 13/109 (11%) Query: 41 LILVTGGRGDGGLVRRHAEKGQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDG 100 L VTGGR + L R +G + +H L+ A NL RR F G Sbjct: 67 LAPVTGGRTNESLSRLGIGRGSRDLRWAFAHGVHLQP-PAAGNLPYS-----RRTAFLRG 120 Query: 101 RTKAYVNDQV-------VSVNFMRAVGSLLIEIHSQHADRSLLDVQGHR 142 KA N V + + AV + E D L V HR Sbjct: 121 GGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHR 169 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 28.2 bits (63), Expect = 5.2 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 17/77 (22%) Query: 429 SGGELSRFLLAL------KIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482 SGG+ R +A KI+L+D+ PT D + +G I L L Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDE---PTSALDPISAG-------KIEETLLGLKDDYT 199 Query: 483 LLAVTHAPQVAAR-ADR 498 +L VT + Q A+R +DR Sbjct: 200 MLLVTRSMQQASRISDR 216 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 28.1 bits (62), Expect = 5.6 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 16/73 (21%) Query: 429 SGGELSRFLLAL------KIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482 SGG+ R +A K++L+D+ PT D + SG+ I LK+LS + Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDE---PTSALDPISSGV-------IEELLKELSHNLS 193 Query: 483 LLAVTHAPQVAAR 495 ++ VTH Q R Sbjct: 194 MIMVTHNMQQGKR 206 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 28.3 bits (63), Expect = 5.7 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 11 LIESLDIDFSAGLSI-LSGDTGSGKSILLDALILVTGGRGD 50 +++ L G + L G TGSGKS LL AL+ + G+ Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGE 1274 >gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. Length = 502 Score = 28.0 bits (63), Expect = 5.7 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 20/85 (23%) Query: 73 PALEILFAEANLTLEKHVILR------RVQFPDGRTKAYVNDQVVSVNFMRAVGSLLIEI 126 ALE LFA A L +V L R+ + DG NDQ E+ Sbjct: 58 EALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQE--------------EL 103 Query: 127 HSQHADRSLLDVQGHRKILDSYADI 151 +Q A + DV G+R+ LD + Sbjct: 104 EAQIARFNPGDVAGYRRFLDYAERV 128 >gnl|CDD|178527 PLN02939, PLN02939, transferase, transferring glycosyl groups. Length = 977 Score = 27.9 bits (62), Expect = 6.4 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Query: 260 LQKSISFLN----EAQENLSDAQHEIERSFSEIQYDA--QELANIEERLFALRAMSRKYS 313 L+K S L+ E + AQ ++ + S +QYD +++ N+++ L K + Sbjct: 262 LEKERSLLDASLRELESKFIVAQEDVSKL-SPLQYDCWWEKVENLQDLLDRATNQVEKAA 320 Query: 314 VSIDQLPELAKKMEEDLADISEGNEKVVSLERV 346 + +DQ +L K+++ A + E N S +V Sbjct: 321 LVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV 353 >gnl|CDD|183313 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional. Length = 345 Score = 27.9 bits (63), Expect = 6.4 Identities = 11/17 (64%), Positives = 14/17 (82%) Query: 25 ILSGDTGSGKSILLDAL 41 +L G+TGSGK+ LL AL Sbjct: 145 VLGGNTGSGKTELLQAL 161 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 27.8 bits (62), Expect = 6.9 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 10 VLIESLDIDFSAG-LSILSGDTGSGKSILLDALI 42 VL+ + + G L+++ G TGSGKS LL +L+ Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLL 707 >gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional. Length = 349 Score = 27.8 bits (62), Expect = 6.9 Identities = 12/44 (27%), Positives = 22/44 (50%) Query: 19 FSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEKGQ 62 F G++ + G+ +GK+ LL+A+ L G G + G+ Sbjct: 21 FPPGVTAVVGENAAGKTNLLEAIYLALTGELPNGRLADLVRFGE 64 >gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 Score = 27.7 bits (61), Expect = 7.6 Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 17 IDFSAGLSILSGDTGSGKSILLDALILVTGG 47 IDF + L+IL G G+GK+ +++ L + G Sbjct: 24 IDFFSPLTILVGPNGAGKTTIIECLKYICTG 54 >gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated. Length = 568 Score = 27.7 bits (62), Expect = 7.8 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Query: 26 LSGDTGSGKSILLDALI---LVTGGRG----DGGLVRRHAEKG 61 +G +G+GKS + AL+ + GR DG +VR+H Sbjct: 397 FTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSE 439 >gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. Length = 754 Score = 27.7 bits (61), Expect = 7.8 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 11/135 (8%) Query: 195 LQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLERKST 254 + L+ Q E+ + +R + + +LS+ M H P V + Sbjct: 277 PEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH----PRVVAAKSSLADLDA-- 330 Query: 255 EVPDLLQKSISFLNEAQENLSDAQHEIERSF-SEIQYDAQELANIEERLFALRAMSRKYS 313 ++ LQK + ++ +DA E S++ A E+ L A+ R + Sbjct: 331 QIRSELQK----ITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386 Query: 314 VSIDQLPELAKKMEE 328 + Sbjct: 387 AKRQLYESYLTNYRQ 401 >gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional. Length = 670 Score = 27.6 bits (62), Expect = 8.2 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 320 PELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEK 374 EL + EE L I G + E V+ EA++ +++ ++ + + + L K Sbjct: 537 VELTRDFEEKLEMIRTG---KATREEVIEEAKETLNKLLEEFKKNKDEIGEELAK 588 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 27.5 bits (61), Expect = 8.9 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488 SGG+ R +A I + ++ DE S + I +++L K ++ VTH Sbjct: 147 SGGQQQRLCIARTIAMEPD----VILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202 Query: 489 APQVAAR-ADR--HFLVYKTNKPDDTQRI 514 + Q A R +DR FL+ + + DDTQ I Sbjct: 203 SMQQARRISDRTAFFLMGELVEHDDTQVI 231 >gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional. Length = 263 Score = 27.5 bits (61), Expect = 9.4 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%) Query: 237 SPISVISS-----MLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYD 291 +PIS + S + +LER S LL + Q+ LSD Q +I+ +IQ + Sbjct: 28 APISSVGSGSVEDRVTQLERISNAHSQLLT-------QLQQQLSDNQSDIDSLRGQIQEN 80 Query: 292 AQELANIEER 301 +L + ER Sbjct: 81 QYQLNQVVER 90 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 27.5 bits (61), Expect = 10.0 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 17/104 (16%) Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488 SGG+ R +A + + VD ++ DE S + I +++L+++ ++ VTH Sbjct: 202 SGGQQQRLCIA-RCLAVDP---EVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTH 257 Query: 489 APQVAARADRHFLVYKTN----KPDDT---------QRIETYVA 519 Q AAR V+ T + DDT QR+E Y+ Sbjct: 258 NMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYIT 301 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.134 0.362 Gapped Lambda K H 0.267 0.0711 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 9,053,752 Number of extensions: 616837 Number of successful extensions: 1858 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1820 Number of HSP's successfully gapped: 152 Length of query: 554 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 456 Effective length of database: 3,876,889 Effective search space: 1767861384 Effective search space used: 1767861384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (26.9 bits)