RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764514|ref|YP_003065586.2| DNA repair protein RecN
[Candidatus Liberibacter asiaticus str. psy62]
(554 letters)
>gnl|CDD|161971 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair.
Length = 563
Score = 374 bits (961), Expect = e-104
Identities = 190/569 (33%), Positives = 302/569 (53%), Gaps = 25/569 (4%)
Query: 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK 60
+T L I N LI L ++F GL++L+G+TG+GKS+++DAL L+ G R VR +
Sbjct: 2 LTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAGASRVRSGENR 61
Query: 61 GQVVAVFEISHLPALEILFAEANLTLEKH----VILRRVQFPDGRTKAYVNDQVVSVNFM 116
V F L + +A E+ VILRR DGR++AY+N + VS + +
Sbjct: 62 AVVEGRFTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSL 121
Query: 117 RAVGSLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQ 176
S L+++H QH + L R++LD++A + + LY+ W LK Q
Sbjct: 122 LEFTSELLDLHGQHDQQLLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQ 181
Query: 177 EQKSS-SQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIA-------VELSSI 228
+++ +Q ++FL+F ++EL+ +QPGE+ L + ++ E++ L
Sbjct: 182 QKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGD 241
Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288
+D S++ + ++ + L++ + A + +A E++ E+
Sbjct: 242 VDVQE-----GSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDEL 296
Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLY 348
++D + L IEERL ++ + RKY S++++ E A+K++E+L + + +E + +LE +
Sbjct: 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVD 356
Query: 349 EARQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSD-----KEDISP 403
+ + D+ A +S R + A+ L K V E+ AL +E FTV I + K
Sbjct: 357 KLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEKAEFTVEIKTSLPSGAKARAGA 416
Query: 404 DGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIG 463
G D+VEF N GE PL K+ASGGELSR +LALK+VL ++ TL+FDEVD G+
Sbjct: 417 YGADQVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVS 476
Query: 464 GAVADAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTP 523
G A AI +L QLS++ Q+L VTH PQVAA AD HF V K T T V L+
Sbjct: 477 GETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEGLDGRT---ATRVRPLSG 533
Query: 524 QERREEIARMLAGSHITEEARAAAEILLE 552
+ER E+ARMLAG ++ A A+ LLE
Sbjct: 534 EERVAELARMLAGLEKSDLTLAHAQELLE 562
>gnl|CDD|182794 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 317 bits (815), Expect = 4e-87
Identities = 178/564 (31%), Positives = 301/564 (53%), Gaps = 27/564 (4%)
Query: 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK 60
+ +L+I N ++ L+IDF +G+++++G+TG+GKSI +DAL L GGR + +VR A +
Sbjct: 2 LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRAEASMVRPGATR 61
Query: 61 GQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRTKAYVNDQVVSVNFMRAVG 120
+ A F + PA + L +LRRV DGR++ ++N V ++ +R +G
Sbjct: 62 ADLCARFSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELG 121
Query: 121 SLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQEQKS 180
LLI+IH QHA + LL + + +LD+YA+ L E+ Y+ W + L ++Q+Q
Sbjct: 122 QLLIQIHGQHAHQLLLKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQ 181
Query: 181 SSQ-DVEFLRFSIDELQALAVQPGE------ENELVVMRSKILKQERIAVEL------SS 227
+ L++ + EL A QPGE E + + ++L + A++L +
Sbjct: 182 ERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLADGEEVN 241
Query: 228 IMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSE 287
I+ + + +S + M +L + V D+L EA + +A E+
Sbjct: 242 ILSQLYSAKQLLSELIGMDSKL----SGVLDML-------EEALIQIQEASDELRHYLDR 290
Query: 288 IQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVL 347
+ D LA +E+RL +++RK+ VS ++LP+ +++ E+ + + + + +L +
Sbjct: 291 LDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAV 350
Query: 348 YEARQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISPDGID 407
+ Q AQ + R ++AK L + + M L + + FT+++ D E +S DG D
Sbjct: 351 EKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGAD 410
Query: 408 RVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVA 467
R+EF V TN G+ P+ K+ASGGELSR LA++++ + P L+FDEVD GI G A
Sbjct: 411 RIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTA 470
Query: 468 DAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTPQERR 527
+G L+QL + Q++ VTH PQVA +HF V +K D ET++ L + R
Sbjct: 471 AVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFV---SKETDGGMTETHMQPLDKKARL 527
Query: 528 EEIARMLAGSHITEEARAAAEILL 551
+E+AR+L GS +T A A+ LL
Sbjct: 528 QELARLLGGSEVTRNTLANAKELL 551
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent.
Length = 1164
Score = 42.4 bits (100), Expect = 3e-04
Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 193 DELQALAVQPGE-ENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLER 251
ELQ L + + EL ++S++ + E ELS + D + I I + +LE+
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK---IGEIEKEIEQLEQ 730
Query: 252 KSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRK 311
+ ++ + L++ L+ ++ + + + E++ + I+ ++L +EE AL + +
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE---ALNDLEAR 787
Query: 312 YSVS-IDQLPELAKKMEEDLADISEG-NEKVVSLERVLYEARQAYDRVA 358
S S I ++ K+EE+++ I E L R+ E +
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
Score = 39.3 bits (92), Expect = 0.002
Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 60/377 (15%)
Query: 17 IDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRR------HAEKGQVVAVFEIS 70
I FS G +++SG GSGKS + DA++ G + K
Sbjct: 19 IPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNE--- 75
Query: 71 HLPALEILFA--EANLTLEKHVILRRVQFPDGRTKAY-VNDQVVSVNFMRAVGSLLIEIH 127
+ + F + E V+ R DG+ Y +N Q V ++ EIH
Sbjct: 76 --AYVTVTFKNDDGKFPDELEVVRRLKVTDDGKYSYYYLNGQRVRLS----------EIH 123
Query: 128 SQHADRSLL----------DVQG--------HRKILDSYADIDLSLCELGTLYRHWCCTA 169
A + DV RKI+D A + +
Sbjct: 124 DFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKK----------E 173
Query: 170 DALKKYQEQKSSSQDVEFLRFSIDEL-QALAVQPGEENELVVMRSKILKQERIAVELSSI 228
AL +E + +++E L IDE Q L E + R + L +E+ E +
Sbjct: 174 KAL---EELEEVEENIERLDLIIDEKRQQLERLRREREKA--ERYQALLKEKREYEGYEL 228
Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288
+ + I L LE + ++ + + + L E ++ L + +I+ E
Sbjct: 229 LKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLY 348
Q +E I E + ++ R + +L + +++ + A+I + ++ LER +
Sbjct: 289 QLRVKE--KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
Query: 349 EARQAYDRVAQDISTKR 365
E R+ D++ ++ + +
Sbjct: 347 EERKRRDKLTEEYAELK 363
Score = 37.0 bits (86), Expect = 0.012
Identities = 75/351 (21%), Positives = 126/351 (35%), Gaps = 52/351 (14%)
Query: 176 QEQKSSSQDVEFLRFSIDELQAL---------AVQPGEENELVVMRSKILKQERIAVELS 226
Q+ + + E+L I ELQ +++ EN + E + L
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALR 878
Query: 227 SIMDDFHKSSSPISVISSMLRRLERKSTEVP---DLLQKSISFLNEAQENLSDAQHEIER 283
+ + + LR LERK E+ + +K +S L E L + EIE
Sbjct: 879 DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIED 938
Query: 284 SFSEIQYDAQELANIE----ERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEK 339
E + +E ++E E + V++ + E EE L + E EK
Sbjct: 939 PKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY----EEVLKRLDELKEK 994
Query: 340 VVSLERVLYEARQAYDRVAQDISTKRYQFAKMLE------KNVMAEMPA----LKLENVC 389
LE E + +R+ + KR F + E + AE+ L LEN
Sbjct: 995 RAKLEE---ERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAELSGGTGELILEN-- 1049
Query: 390 FTVNITSDKEDISPDGIDRVEFYVQTNRGENPGPLMKLA--SGGELSRFLLALKIVLVDQ 447
PD D ++ + P+ +L SGGE S L+ +
Sbjct: 1050 -------------PD--DPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRY 1094
Query: 448 GSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAARADR 498
P FDEVD + G + + +++ + + Q + V+ + ADR
Sbjct: 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADR 1145
Score = 32.0 bits (73), Expect = 0.45
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 242 ISSMLRRLERKSTEVPDL---LQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI 298
+ + L+R S E+ DL + + +NE +E D EI++ +++ A +L+
Sbjct: 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
Query: 299 EERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKV---VSLERVLYEARQA-Y 354
E+ L+ L+ + +L +L +++ E A E+V ++E VL + Q +
Sbjct: 468 EQELYDLKEEYDRVE---KELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH 524
Query: 355 DRVAQDISTK-RYQFA 369
VAQ S RY A
Sbjct: 525 GTVAQLGSVGERYATA 540
Score = 27.7 bits (62), Expect = 8.0
Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 269 EAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEE 328
E + L DA+ + + +EI E+ +E + R K ++ EL +++E+
Sbjct: 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL---TEEYAELKEELED 368
Query: 329 DLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLEN 387
A++ E +++ L + R+ +++ ++I+ + + ++ E+ L
Sbjct: 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 39.0 bits (92), Expect = 0.003
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 2 TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRG-----DGGLVRR 56
TRLS+ + E LD++ S G+++L G+ G GK+ LL+A+ L+ GR D L+R
Sbjct: 4 TRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHRTARDKELIRF 63
Query: 57 HAEKGQVVAVFEISHLP 73
AE + E
Sbjct: 64 GAEAAVIHGRVEKGGRE 80
>gnl|CDD|162953 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase. Members of
this protein family are CDP-glucose 4,6-dehydratase from
a variety of Gram-negative and Gram-positive bacteria.
Members typically are encoded next to a gene that
encodes a glucose-1-phosphate cytidylyltransferase,
which produces the substrate, CDP-D-glucose, used by
this enzyme to produce CDP-4-keto-6-deoxyglucose.
Length = 349
Score = 38.4 bits (90), Expect = 0.005
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 321 ELAKKMEEDLADISEGNEKVVSLERVLYEARQ--AYDRVAQDISTKRYQF-AKMLEKNVM 377
LAKK+E+ DI + L + + E + + AQ + K Y + E NVM
Sbjct: 49 NLAKKIEDHFGDIRDAA----KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVM 104
Query: 378 AEMPAL----KLENVCFTVNITSDK 398
+ L + +V VN+TSDK
Sbjct: 105 GTVNLLEAIRAIGSVKAVVNVTSDK 129
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 37.7 bits (88), Expect = 0.009
Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 224 ELSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIER 283
EL +++ + + + L++ E+ D + ++ + E L E+E+
Sbjct: 596 ELEPFYNEYLELKDAEKELEREEKELKKLEEEL-DKAFEELAETEKRLEELRKELEELEK 654
Query: 284 SFSEIQYD--AQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVV 341
+SE +Y+ +E + L LRA + +++ + +K++E+L + + +++
Sbjct: 655 KYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
Query: 342 SLERVL 347
LE+ L
Sbjct: 715 KLEKAL 720
Score = 29.6 bits (67), Expect = 2.0
Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Query: 215 ILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENL 274
I + E I + + + I+ ISS L L + ++ +++ L E +E +
Sbjct: 185 IKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE----LEELKEEI 240
Query: 275 SDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADIS 334
+ + E+E + +++ +EER+ L+ + + +L EL +K EE +
Sbjct: 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE 300
Query: 335 EGNEKVVSLERV------LYEARQAYDRVAQDISTKRYQFAKMLEK 374
E + L + L E + +++ K + ++ +K
Sbjct: 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKK 346
Score = 29.3 bits (66), Expect = 2.9
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 3 RLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILV 44
L I N +S ++F G++++ G GSGKS +L+A ILV
Sbjct: 5 ELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEA-ILV 45
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 36.8 bits (85), Expect = 0.016
Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 58/311 (18%)
Query: 205 ENELVVMRSKI--LKQERIAVE-LSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQ 261
ENE + +K +++ +I +E L +D++ K + I I L+ + + ++ D L+
Sbjct: 625 ENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLK 684
Query: 262 KSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPE 321
KS L++A+ N + + IE + I + + +I E L E
Sbjct: 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDINETL------------------E 726
Query: 322 LAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEKNVMAEMP 381
KK+++ + D L R+A+D+ M+ K+ M
Sbjct: 727 SMKKIKKAIGD--------------LKRLREAFDKSG---------VPAMIRKSASQAMT 763
Query: 382 ALKLENVCFTVNITSDKEDISPDGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALK 441
+ F N+ D D+ D F + +RG + L SGGE + AL+
Sbjct: 764 S-LTRKYLFEFNLDFDDIDVDQD------FNITVSRGGMVEGIDSL-SGGEKTAVAFALR 815
Query: 442 IVLVD--QGSIPTLVFDE----VDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAAR 495
+ + L+ DE +D + D I Y LK S Q++ ++H ++ +
Sbjct: 816 VAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSV 875
Query: 496 ADRHFLVYKTN 506
AD + V K++
Sbjct: 876 ADVAYEVKKSS 886
Score = 30.6 bits (69), Expect = 0.96
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 3 RLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDAL 41
R+ + N + + +I+F G++I++G G+GKS ++DA+
Sbjct: 5 RIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAI 43
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 36.5 bits (85), Expect = 0.017
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488
SGG+ R LAL + + L+ DE + + + L+ L++ +L VTH
Sbjct: 460 SGGQAQR--LALARAFLRDAPL--LLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTH 515
Query: 489 APQVAARADR 498
+A RADR
Sbjct: 516 RLALAERADR 525
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle.
Length = 1179
Score = 36.2 bits (84), Expect = 0.024
Identities = 33/199 (16%), Positives = 82/199 (41%), Gaps = 4/199 (2%)
Query: 175 YQEQKSSSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQE--RIAVELSSIMDDF 232
E Q + LR + L+ + + E + + L +E + +L + ++
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
Query: 233 HKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDA 292
+ + + + L LE + E+ + L+ S + + + ++ +EIER + ++
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
Query: 293 QELANIEERLFAL--RAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEA 350
+++ + L + + +L EL +++EE ++ E + L L EA
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
Query: 351 RQAYDRVAQDISTKRYQFA 369
QA D ++++ + +
Sbjct: 474 EQALDAAERELAQLQARLD 492
Score = 33.9 bits (78), Expect = 0.11
Identities = 39/214 (18%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 172 LKKYQEQKSSSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDD 231
LK + Q ++ + L+ + EL+ L+V+R + L++E ++
Sbjct: 202 LKSLERQAEKAERYKELKAELRELEL---------ALLVLRLEELREELEELQEE----- 247
Query: 232 FHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYD 291
+ L L + E+ + L++ ++E +E + + Q E+ +EI
Sbjct: 248 -------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300
Query: 292 AQELANIEERLFALRAMSRKYSVSIDQLP-----------ELAKKMEEDLADISEGNEKV 340
Q+ + ERL L + +++L EL +K+EE ++ ++
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 341 VSLERVLYEARQAYDRVAQDISTKRYQFAKMLEK 374
LE L E + + + + T R + A++ +
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
Score = 33.5 bits (77), Expect = 0.13
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
Query: 171 ALKKYQEQKSSSQDVEFLRFSIDEL-QALAVQPGEENELVVMRSKILKQ-ERIAVELSSI 228
L++ +E + + +E L I EL +ALA E EL ++ K+ E ++ ++S++
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
Query: 229 MDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEI 288
D + + + + + +L ++ TE+ +++ L EA+E L++A+ EIE ++I
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Query: 289 QYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNE 338
+ +EL + E L LRA + L E + +E +A E
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
Score = 30.4 bits (69), Expect = 1.2
Identities = 29/210 (13%), Positives = 71/210 (33%), Gaps = 16/210 (7%)
Query: 176 QEQKSSSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKS 235
E + + + L + EL+A + E E + E +E +
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE-----AQIEQL 794
Query: 236 SSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQEL 295
+ + L L + T + + L + ++ + +E +I+ ++++
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
Query: 296 ANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLA-----------DISEGNEKVVSLE 344
++ + L + + ++ L +EE LA ++ E K L
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
Query: 345 RVLYEARQAYDRVAQDISTKRYQFAKMLEK 374
R L E R+ ++ + + + E+
Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDNLQER 944
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 35.6 bits (83), Expect = 0.035
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 280 EIERSFSEIQYDAQELANIEERLFALRAMSRKYSVS-----IDQLPELAKKMEEDLADIS 334
E + + EI L +IEE+LF ++ K+ I+++ L +EED+ I
Sbjct: 68 EWRQKWDEI--VTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQIL 125
Query: 335 EGNEKVVSLE---RVLYE-ARQAYDRVAQDISTKRYQF 368
E ++++ E R E + Y + + + R+ F
Sbjct: 126 EELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF 163
Score = 30.6 bits (70), Expect = 1.0
Identities = 25/133 (18%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 239 ISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI 298
+ L + ++ E L++ I + ++ L++++ E R + +L ++
Sbjct: 312 SDTLPDFLEHAKEQNKE----LKEEIDRVKQSYT-LNESELESVRQLEK------QLESL 360
Query: 299 EERLFALR-AMSRK---YSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAY 354
E++ + ++ + YS ++L E+ K++EE + + +E + L + EAR+
Sbjct: 361 EKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKL 420
Query: 355 DRVAQDIST-KRY 366
+R + KRY
Sbjct: 421 ERYRNKLHEIKRY 433
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerizes into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 35.6 bits (83), Expect = 0.038
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 294 ELANIEERLFALRAMSRKYSVS-----IDQLPELAKKMEEDLADISEGNEKVVSLE---R 345
L +IEE LF ++ K+ I ++ EL +EED+ I E ++ E R
Sbjct: 76 SLPDIEELLFEAEELNDKFRFLKAKKAIKEIEELLDTIEEDIEQILEELNELKESEEKNR 135
Query: 346 VLY-EARQAYDRVAQDISTKRYQFAKMLEK 374
E + Y + + + K + + L++
Sbjct: 136 KEVEELKDKYRELRKTLLAKSFSYGPALDE 165
Score = 31.0 bits (71), Expect = 0.93
Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 239 ISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI 298
I ++ L ++ + L + L ++ L++ + E R + +L +
Sbjct: 308 IDKLTDFLEHAREQNKQ----LLLELDRLQQSYT-LNEDELETVRELEK------QLEEL 356
Query: 299 EERLFALR-AMSRK---YSVSIDQLPELAKKMEEDLADISEG----NEKVVSLERVLYEA 350
E + L ++ K YS ++L +++E+ L +I + +E + L + EA
Sbjct: 357 EAQYDQLVERIAEKKVAYSELQEEL----EEIEKQLEEIEKEQEELSESLQGLRKDELEA 412
Query: 351 RQAYDRVAQDIST-KRY 366
R+ Q + KRY
Sbjct: 413 REKLQEYRQKLHEIKRY 429
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 33.2 bits (76), Expect = 0.16
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 303 FALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDIS 362
FA+ KY+ +I + P++ ++EED+ I+EG + + VL E+R+ ++V ++
Sbjct: 514 FAVVDALEKYAPTITK-PDMTSRLEEDMDKIAEGK---IKEDAVLEESREMLEQVFDELD 569
Query: 363 TKRYQFAKML 372
R + + L
Sbjct: 570 KNREKIRESL 579
>gnl|CDD|161957 TIGR00611, recf, recF protein. All proteins in this family for
which functions are known are DNA binding proteins that
assist the filamentation of RecA onto DNA for the
initiation of recombination or recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University).
Length = 365
Score = 33.5 bits (77), Expect = 0.16
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 2 TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDAL-ILVTGG 47
+RL + + +++D++ S G++++ G G GK+ LL+A+ L G
Sbjct: 4 SRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGR 50
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 32.7 bits (75), Expect = 0.25
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 2 TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDA 40
R+ + N D+ G++++ G GSGKS LL+A
Sbjct: 4 DRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEA 42
Score = 30.0 bits (68), Expect = 1.6
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 242 ISSMLRRLERKSTEVPDLLQK------SISFLNEAQENLSDAQHEIERSFSEIQYDAQEL 295
+ + RLE E DLL + + +E L D E+ E + AQ
Sbjct: 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAH 340
Query: 296 ANIEERLF--ALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQA 353
E L A R + ++ EL ++EE + + E++ LE + E R+
Sbjct: 341 NEEAESLREDADDLEERAEELR-EEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
Query: 354 YD 355
+
Sbjct: 400 FG 401
Score = 27.7 bits (62), Expect = 8.9
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 269 EAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSVSIDQLPELAKKMEE 328
E +E ++ + E+E + ++ +E+ +EE + LR ++ + L +EE
Sbjct: 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE---RFGDAPVDLGNAEDFLEE 416
Query: 329 DLADISEGNEKVVSLERVLYEARQA 353
+ E E+ LE L AR+
Sbjct: 417 LREERDELREREAELEATLRTARER 441
>gnl|CDD|150100 pfam09321, DUF1978, Domain of unknown function (DUF1978). Members
of this family are found in various hypothetical
proteins produced by the bacterium Chlamydia pneumoniae.
Their exact function has not, as yet, been identified.
Length = 241
Score = 32.5 bits (74), Expect = 0.26
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 246 LRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFAL 305
L+ LER + D L+K S E ++ L DAQ E ER + YD +E+ +EERL AL
Sbjct: 70 LKHLERTYEKALDRLEKQSS--KENKKVLQDAQREFERQSQDF-YD-KEIEEVEERLEAL 125
Query: 306 RAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAY 354
+A+ + S D+ E + + D+ + + ++ Y
Sbjct: 126 QALYPEVSEREDET-EKQETVSSYARDLETALDHIEVEYVQCVREQEDY 173
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 32.6 bits (75), Expect = 0.30
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 30/117 (25%)
Query: 255 EVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMSRKYSV 314
E + L+++ L EAQ+ L+ AQ E ER I+ DA+ A A+RA
Sbjct: 61 EAEERLRQAAQALAEAQQKLAQAQQEAER----IRADAKARAE------AIRA------- 103
Query: 315 SIDQLPELAKKMEEDLADISEGNEKVVSLE--RVLYE-----ARQAYDRVAQDISTK 364
E+ K+ ED+A + + +S E RV+ + A A + + +
Sbjct: 104 ------EIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPGR 154
>gnl|CDD|164820 PHA00520, PHA00520, packaging NTPase P4.
Length = 330
Score = 31.8 bits (72), Expect = 0.52
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 21 AGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEKGQ----VVAVFEISHLPAL 75
+G+ ++ G TGSGK+ LL+AL GG GD V R E + + VF L A+
Sbjct: 124 SGVEVVVGGTGSGKTPLLNALAPDVGG-GDKYAVIRWGEPLEGYDTDLHVFAALILAAM 181
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 31.6 bits (71), Expect = 0.55
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488
SGG+ R +A + L + L+ DE S I + AI + +L +I ++ V+H
Sbjct: 155 SGGQQQRLTIARALALKPK----VLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSH 210
Query: 489 APQVAAR 495
PQ AR
Sbjct: 211 NPQQVAR 217
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 31.2 bits (70), Expect = 0.79
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 218 QERIAVELSSIMDDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDA 277
E+I E S+IMD +H PI + R E K T++ D L IS +EA + L A
Sbjct: 270 HEKIMRESSAIMDKYH---DPIIDERIKMWR-EGKRTQIEDFLDIFISIKDEAGQPLLTA 325
Query: 278 QHEIERSFSEIQYDAQE-LANIEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEG 336
EI+ + E+ A + +N E +A+ M K PE+ K E++
Sbjct: 326 D-EIKPTIKELVMAAPDNPSNAVE--WAMAEMINK--------PEILHKAMEEI------ 368
Query: 337 NEKVVSLERVLYEA 350
++VV ER + E+
Sbjct: 369 -DRVVGKERFVQES 381
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 30.8 bits (70), Expect = 1.0
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVF-DEVDSGIGGAVADAIGYRLKQLSK--KIQLLA 485
SGGE R +A+ LV+Q P+LV DE + A I + +L++ L
Sbjct: 143 SGGERQR--VAIARALVNQ---PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLV 197
Query: 486 VTHAPQVAARADRHF 500
VTH ++A + DR
Sbjct: 198 VTHDLELAKKLDRVL 212
>gnl|CDD|150847 pfam10236, DAP3, Mitochondrial ribosomal death-associated protein
3. This is a family of conserved proteins which were
originally described as death-associated-protein-3
(DAP-3). The proteins carry a P-loop DNA-binding motif,
and induce apoptosis. DAP3 has been shown to be a
pro-apoptotic factor in the mitochondrial matrix and to
be crucial for mitochondrial biogenesis and so has also
been designated as MRP-S29 (mitochondrial ribosomal
protein subunit 29).
Length = 274
Score = 30.7 bits (70), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 25 ILSGDTGSGKSILLDALILVTGGRGDGGLV 54
+L+G+ GSGKS+LL + G +V
Sbjct: 27 VLTGERGSGKSVLL--AQAMAYALTQGWVV 54
>gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 30.7 bits (70), Expect = 1.1
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 320 PELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEKNVMAE 379
E+ ++E D+ I +G +K E V E+R+ + ++ KR + L ++ AE
Sbjct: 539 EEMTAQLEADMQAIEDGKKK---KEDVTEESREMLKEILSELKEKRKEIGDHLAGSLKAE 595
Query: 380 MPALK 384
+LK
Sbjct: 596 NRSLK 600
>gnl|CDD|140251 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 30.5 bits (69), Expect = 1.2
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 351 RQAYDRVAQ-------DISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISP 403
R+AY ++A+ KRY K EK + E + T+ +
Sbjct: 299 RKAYAQMAEKGGTTTAAALEKRYDLLKAFEKKTLNEQEPVMQ---------TAFEMSDEL 349
Query: 404 DGIDRVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIP 451
DG F+ G+ P P G E+ F L QG IP
Sbjct: 350 DGETEQSFF-----GKGPAP------GNEMEFFQS-----LAQQGGIP 381
>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. There are two conserved sequence
motifs: GKT and YLP.
Length = 1192
Score = 30.4 bits (69), Expect = 1.3
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 267 LNEAQENLSDAQHEIERSFSEI-------QYDAQELANIEERLFALRAMSRKYSVSIDQL 319
L + ++ ++E+E E+ +EL +E AL + + ++
Sbjct: 431 LEALKLEFNEEEYELELRLGELKQRLDSATATPEELEQLEINDAALEKAQEEQEAARAEV 490
Query: 320 PELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDIS 362
+L ++ + E E + ER L + RQA + +S
Sbjct: 491 EQLQSELRQLRKRRDEALEALQRAERRLLQLRQALQELELQLS 533
Score = 29.6 bits (67), Expect = 2.0
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 26/134 (19%)
Query: 242 ISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEER 301
+ LR L+ + E D L + IS N L + E++ E Q D + +IE
Sbjct: 291 LRFQLRTLDDEWKEARDELNQEISAANAD---LEADRSELDLL--EDQKDKFQDKDIE-- 343
Query: 302 LFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDI 361
+ +DQLP+ ++EE A + K ++R Y+R Q I
Sbjct: 344 ---------QLKADLDQLPQWQSELEEVEARLDLLTGKHQDIQR-------KYERRKQKI 387
Query: 362 STKRYQFAKMLEKN 375
Q + LEKN
Sbjct: 388 KE---QLERDLEKN 398
>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL.
NifL is a modulator of the nitrogen fixation positive
regulator protein NifA, and is therefore a negative
regulator. It binds NifA. NifA and NifL are encoded by
adjacent genes.
Length = 494
Score = 30.3 bits (68), Expect = 1.5
Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 187 FLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSML 246
+L +I ++ L + E L +++ + ++ER+ ++ H+ P+++IS+ +
Sbjct: 240 YLLLTIADISNLR-EEQERARLSALQALMAEEERLEAIRETLSAAIHRLQGPMNLISAAI 298
Query: 247 RRLERKSTE-----VPDLLQKSISFLNEAQENL------SDAQHEIERSFSEIQYDAQEL 295
L+R+ + +LQ+++S E E L S + + + ++I D L
Sbjct: 299 SVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIPQSPQEIVVPVNLNQILRDVITL 358
Query: 296 ANIEERLFA 304
+ RL A
Sbjct: 359 ST--PRLLA 365
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 29.8 bits (67), Expect = 1.7
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
Query: 17 IDFSA------GLSILSGDTGSGKSILLDALIL 43
IDF+A GL ++G TG+GK+ LLDA+ L
Sbjct: 20 IDFTAEPFASNGLFAITGPTGAGKTTLLDAICL 52
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 29.6 bits (66), Expect = 2.1
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488
SGG+ R +A + + L+FDE S + +I + L K+ +L VTH
Sbjct: 163 SGGQQQRLCIARALATDPE----ILLFDEPTSALDPIATASIEELISDLKNKVTILIVTH 218
Query: 489 APQVAAR 495
Q AAR
Sbjct: 219 NMQQAAR 225
>gnl|CDD|115287 pfam06617, M-inducer_phosp, M-phase inducer phosphatase. This
family represents a region within eukaryotic M-phase
inducer phosphatases (EC:3.1.3.48), which also contain
the pfam00581 domain. These proteins are involved in the
control of mitosis.
Length = 258
Score = 29.2 bits (65), Expect = 2.6
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 210 VMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLER-KSTEVPDLLQ--KSISF 266
VM+ +QE L S F S P S+ +L+R+ER + P ++ KS S
Sbjct: 172 VMKLT--EQEEKDNILLSRCRLFRSPSMPESLTRPILKRVERPLDEDTPVKVKRRKSSSS 229
Query: 267 LNEAQENLSDAQHEIERSFS 286
E + + + + RS S
Sbjct: 230 PVEEKLEGLEPKKRVLRSKS 249
>gnl|CDD|180226 PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.
Length = 318
Score = 29.4 bits (67), Expect = 2.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 22 GLSILSGDTGSGKSILLD--ALILVTGGRGDGGLVRRHAEKGQVVAV 66
G ++ GDT G + + A+ V GGR L R A+ G +VAV
Sbjct: 114 GAELIGGDTTRGPDLSISVTAIGDVPGGRA---LRRSGAKPGDLVAV 157
>gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 29.1 bits (66), Expect = 2.9
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 246 LRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFAL 305
LR+LE + + D LQ + + L E L Q + ER+ + + ++Q L I L
Sbjct: 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG 182
Query: 306 RAMSRKYSVS-IDQL 319
+ + S L
Sbjct: 183 KVGGKALRPSQRVLL 197
>gnl|CDD|148076 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough deal
proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 571
Score = 29.2 bits (66), Expect = 2.9
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 242 ISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQE-LANIEE 300
IS +L ++E EV ++ K S + N+S A+ + R S + D + LA+
Sbjct: 16 ISRLLSKVEEIKEEVRAMINKKYS---DFLPNMSSAEELLSRV-SSLSEDISDLLASEVS 71
Query: 301 RLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD 360
+ +V++++L EL +++EE + L + L + +A + V +
Sbjct: 72 NEIL-----QDLNVAVEELAELKRQLEE--------KILGLDLLKKLLKIHEALEEVNEA 118
Query: 361 ISTKRYQF-AKMLEK 374
+ K Y A +LEK
Sbjct: 119 LKGKDYLKAADLLEK 133
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 29.3 bits (66), Expect = 2.9
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 474 LKQLSKKIQ-LLAVTHAPQVAARADR 498
L QL + ++ VTH PQVAA+A+R
Sbjct: 187 LHQLRDRGHTVIIVTHDPQVAAQAER 212
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 29.1 bits (66), Expect = 3.1
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 17/77 (22%)
Query: 429 SGGELSRFLLA---LK---IVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482
SGGE R LA LK ++L D+ PT D + D + L +L+ + +
Sbjct: 136 SGGEQQRVALARAILKDPPLILADE---PTGSLDPKNR-------DEVLDLLLELNDEGK 185
Query: 483 -LLAVTHAPQVAARADR 498
++ VTH P+VA +ADR
Sbjct: 186 TIIIVTHDPEVAKQADR 202
>gnl|CDD|178502 PLN02914, PLN02914, hexokinase.
Length = 490
Score = 29.1 bits (65), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 324 KKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD 360
+KMEED + G VV+++ LYE Y R QD
Sbjct: 417 EKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQD 453
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 29.0 bits (65), Expect = 3.4
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 408 RVEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVA 467
R+ +Y+Q + E+P PL L+ LKI + + V + + AV
Sbjct: 219 RLLYYLQMYQMESPFPLATLSKESLFQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVT 278
Query: 468 --DAIGYRLKQLSK 479
G+ + +L +
Sbjct: 279 FLREQGHEVVELEE 292
>gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 28.6 bits (65), Expect = 3.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 140 GHRKI----LDSYADIDLSLCELGTLYRH 164
GH I L SY D+ L L E GT+YR+
Sbjct: 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRY 300
>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.6 bits (64), Expect = 4.1
Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 252 KSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANI-----EERLFALR 306
KST + +Q ++ + N+ + + EIE ++ Q ++++ I + L L
Sbjct: 1528 KSTIAYETIQYNLGRVKHNLLNILNIKDEIETILNKAQDLMRDISKISKIVENKNLENLN 1587
Query: 307 AMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYD 355
Y +D + + + ME + ++E V ++E+ L + ++ Y+
Sbjct: 1588 DKEADYVKYLDNILKEKQLMEAEYKKLNEIYSDVDNIEKELKKHKKNYE 1636
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 28.6 bits (65), Expect = 4.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 24 SILSGDTGSGKSILLDALI 42
++L+G +G GKS LL+AL
Sbjct: 167 TVLAGQSGVGKSTLLNALA 185
>gnl|CDD|178723 PLN03181, PLN03181, glycosyltransferase; Provisional.
Length = 453
Score = 28.6 bits (64), Expect = 4.5
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 48 RGDGGLVRRHAEK 60
R D L RRHAEK
Sbjct: 347 REDATLRRRHAEK 359
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 28.4 bits (63), Expect = 4.5
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488
SGG+ R +A + + S L+ DE S + + + +L K ++ VTH
Sbjct: 148 SGGQQQRLCIARAMAV----SPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTH 203
Query: 489 APQVAAR-ADRHFLVYKTN--KPDDTQRIET 516
Q AAR +D+ Y + DDT++I T
Sbjct: 204 NMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 28.7 bits (64), Expect = 4.7
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 16/73 (21%)
Query: 429 SGGELSRFLLAL------KIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482
SGG+ R ++A KI+L+D+ PT D V G A + + + LK K+
Sbjct: 151 SGGQRQRLVIARALAMKPKILLMDE---PTANIDPV----GTAKIEELLFELK---KEYT 200
Query: 483 LLAVTHAPQVAAR 495
++ VTH+P AAR
Sbjct: 201 IVLVTHSPAQAAR 213
>gnl|CDD|131577 TIGR02525, plasmid_TraJ, plasmid transfer ATPase TraJ. Members of
this protein family are predicted ATPases associated
with plasmid transfer loci in bacteria. This family is
most similar to the DotB ATPase of a type-IV
secretion-like system of obligate intracellular
pathogens Legionella pneumophila and Coxiella burnetii
(TIGR02524).
Length = 372
Score = 28.6 bits (64), Expect = 4.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 20 SAGLSILSGDTGSGKSILLDAL 41
+AGL ++ G+TGSGKS L ++
Sbjct: 148 AAGLGLICGETGSGKSTLAASI 169
>gnl|CDD|162881 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is
essential for cobalamin biosynthesis (by knockout of the
R. capsulatus gene ) and is complemented by the
characterized precorrin 3B synthase CobG. The enzyme has
been shown to contain flavin, heme and Fe-S cluster
cofactors and is believed to require dioxygen as a
substrate. This model identifies the N-terminal portion
of the R. capsulatus gene which, in other species exists
as a separate protein. The C-terminal portion is
homologous to the 2-component signal transduction system
protein CitB (TIGR02484).
Length = 432
Score = 28.3 bits (63), Expect = 5.1
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 41 LILVTGGRGDGGLVRRHAEKGQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDG 100
L VTGGR + L R +G + +H L+ A NL RR F G
Sbjct: 67 LAPVTGGRTNESLSRLGIGRGSRDLRWAFAHGVHLQP-PAAGNLPYS-----RRTAFLRG 120
Query: 101 RTKAYVNDQV-------VSVNFMRAVGSLLIEIHSQHADRSLLDVQGHR 142
KA N V + + AV + E D L V HR
Sbjct: 121 GGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHR 169
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 28.2 bits (63), Expect = 5.2
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 17/77 (22%)
Query: 429 SGGELSRFLLAL------KIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482
SGG+ R +A KI+L+D+ PT D + +G I L L
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDE---PTSALDPISAG-------KIEETLLGLKDDYT 199
Query: 483 LLAVTHAPQVAAR-ADR 498
+L VT + Q A+R +DR
Sbjct: 200 MLLVTRSMQQASRISDR 216
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 28.1 bits (62), Expect = 5.6
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 429 SGGELSRFLLAL------KIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQ 482
SGG+ R +A K++L+D+ PT D + SG+ I LK+LS +
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDE---PTSALDPISSGV-------IEELLKELSHNLS 193
Query: 483 LLAVTHAPQVAAR 495
++ VTH Q R
Sbjct: 194 MIMVTHNMQQGKR 206
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se.
Length = 1490
Score = 28.3 bits (63), Expect = 5.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 11 LIESLDIDFSAGLSI-LSGDTGSGKSILLDALILVTGGRGD 50
+++ L G + L G TGSGKS LL AL+ + G+
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGE 1274
>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis.
Length = 502
Score = 28.0 bits (63), Expect = 5.7
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 20/85 (23%)
Query: 73 PALEILFAEANLTLEKHVILR------RVQFPDGRTKAYVNDQVVSVNFMRAVGSLLIEI 126
ALE LFA A L +V L R+ + DG NDQ E+
Sbjct: 58 EALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQE--------------EL 103
Query: 127 HSQHADRSLLDVQGHRKILDSYADI 151
+Q A + DV G+R+ LD +
Sbjct: 104 EAQIARFNPGDVAGYRRFLDYAERV 128
>gnl|CDD|178527 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 27.9 bits (62), Expect = 6.4
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 260 LQKSISFLN----EAQENLSDAQHEIERSFSEIQYDA--QELANIEERLFALRAMSRKYS 313
L+K S L+ E + AQ ++ + S +QYD +++ N+++ L K +
Sbjct: 262 LEKERSLLDASLRELESKFIVAQEDVSKL-SPLQYDCWWEKVENLQDLLDRATNQVEKAA 320
Query: 314 VSIDQLPELAKKMEEDLADISEGNEKVVSLERV 346
+ +DQ +L K+++ A + E N S +V
Sbjct: 321 LVLDQNQDLRDKVDKLEASLKEANVSKFSSYKV 353
>gnl|CDD|183313 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.
Length = 345
Score = 27.9 bits (63), Expect = 6.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 25 ILSGDTGSGKSILLDAL 41
+L G+TGSGK+ LL AL
Sbjct: 145 VLGGNTGSGKTELLQAL 161
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 27.8 bits (62), Expect = 6.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 10 VLIESLDIDFSAG-LSILSGDTGSGKSILLDALI 42
VL+ + + G L+++ G TGSGKS LL +L+
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLL 707
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 27.8 bits (62), Expect = 6.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 19 FSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEKGQ 62
F G++ + G+ +GK+ LL+A+ L G G + G+
Sbjct: 21 FPPGVTAVVGENAAGKTNLLEAIYLALTGELPNGRLADLVRFGE 64
>gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1311
Score = 27.7 bits (61), Expect = 7.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 17 IDFSAGLSILSGDTGSGKSILLDALILVTGG 47
IDF + L+IL G G+GK+ +++ L + G
Sbjct: 24 IDFFSPLTILVGPNGAGKTTIIECLKYICTG 54
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 27.7 bits (62), Expect = 7.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 26 LSGDTGSGKSILLDALI---LVTGGRG----DGGLVRRHAEKG 61
+G +G+GKS + AL+ + GR DG +VR+H
Sbjct: 397 FTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSE 439
>gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein
family. The model describes the exopolysaccharide
transport protein family in bacteria. The transport
protein is part of a large genetic locus which is
associated with exopolysaccharide (EPS) biosynthesis.
Detailed molecular characterization and gene fusion
analysis revealed atleast seven gene products are
involved in the overall regulation, which among other
things, include exopolysaccharide biosynthesis, property
of conferring virulence and exopolysaccharide export.
Length = 754
Score = 27.7 bits (61), Expect = 7.8
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 11/135 (8%)
Query: 195 LQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPISVISSMLRRLERKST 254
+ L+ Q E+ + +R + + +LS+ M H P V +
Sbjct: 277 PEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH----PRVVAAKSSLADLDA-- 330
Query: 255 EVPDLLQKSISFLNEAQENLSDAQHEIERSF-SEIQYDAQELANIEERLFALRAMSRKYS 313
++ LQK + ++ +DA E S++ A E+ L A+ R +
Sbjct: 331 QIRSELQK----ITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386
Query: 314 VSIDQLPELAKKMEE 328
+
Sbjct: 387 AKRQLYESYLTNYRQ 401
>gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional.
Length = 670
Score = 27.6 bits (62), Expect = 8.2
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 320 PELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQDISTKRYQFAKMLEK 374
EL + EE L I G + E V+ EA++ +++ ++ + + + L K
Sbjct: 537 VELTRDFEEKLEMIRTG---KATREEVIEEAKETLNKLLEEFKKNKDEIGEELAK 588
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 27.5 bits (61), Expect = 8.9
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488
SGG+ R +A I + ++ DE S + I +++L K ++ VTH
Sbjct: 147 SGGQQQRLCIARTIAMEPD----VILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
Query: 489 APQVAAR-ADR--HFLVYKTNKPDDTQRI 514
+ Q A R +DR FL+ + + DDTQ I
Sbjct: 203 SMQQARRISDRTAFFLMGELVEHDDTQVI 231
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 27.5 bits (61), Expect = 9.4
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 237 SPISVISS-----MLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYD 291
+PIS + S + +LER S LL + Q+ LSD Q +I+ +IQ +
Sbjct: 28 APISSVGSGSVEDRVTQLERISNAHSQLLT-------QLQQQLSDNQSDIDSLRGQIQEN 80
Query: 292 AQELANIEER 301
+L + ER
Sbjct: 81 QYQLNQVVER 90
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 27.5 bits (61), Expect = 10.0
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 429 SGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTH 488
SGG+ R +A + + VD ++ DE S + I +++L+++ ++ VTH
Sbjct: 202 SGGQQQRLCIA-RCLAVDP---EVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTH 257
Query: 489 APQVAARADRHFLVYKTN----KPDDT---------QRIETYVA 519
Q AAR V+ T + DDT QR+E Y+
Sbjct: 258 NMQQAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYIT 301
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.134 0.362
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,053,752
Number of extensions: 616837
Number of successful extensions: 1858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1820
Number of HSP's successfully gapped: 152
Length of query: 554
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 456
Effective length of database: 3,876,889
Effective search space: 1767861384
Effective search space used: 1767861384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)