BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764514|ref|YP_003065586.2| DNA repair protein RecN
[Candidatus Liberibacter asiaticus str. psy62]
(554 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/554 (100%), Positives = 554/554 (100%)
Query: 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK 60
MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK
Sbjct: 1 MTRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRGDGGLVRRHAEK 60
Query: 61 GQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRTKAYVNDQVVSVNFMRAVG 120
GQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRTKAYVNDQVVSVNFMRAVG
Sbjct: 61 GQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRTKAYVNDQVVSVNFMRAVG 120
Query: 121 SLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQEQKS 180
SLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQEQKS
Sbjct: 121 SLLIEIHSQHADRSLLDVQGHRKILDSYADIDLSLCELGTLYRHWCCTADALKKYQEQKS 180
Query: 181 SSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPIS 240
SSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPIS
Sbjct: 181 SSQDVEFLRFSIDELQALAVQPGEENELVVMRSKILKQERIAVELSSIMDDFHKSSSPIS 240
Query: 241 VISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEE 300
VISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEE
Sbjct: 241 VISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEE 300
Query: 301 RLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD 360
RLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD
Sbjct: 301 RLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRVAQD 360
Query: 361 ISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISPDGIDRVEFYVQTNRGEN 420
ISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISPDGIDRVEFYVQTNRGEN
Sbjct: 361 ISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDISPDGIDRVEFYVQTNRGEN 420
Query: 421 PGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKK 480
PGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKK
Sbjct: 421 PGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKK 480
Query: 481 IQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTPQERREEIARMLAGSHIT 540
IQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTPQERREEIARMLAGSHIT
Sbjct: 481 IQLLAVTHAPQVAARADRHFLVYKTNKPDDTQRIETYVAVLTPQERREEIARMLAGSHIT 540
Query: 541 EEARAAAEILLEFQ 554
EEARAAAEILLEFQ
Sbjct: 541 EEARAAAEILLEFQ 554
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 31.2 bits (69), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 14 SLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRG 49
SL + F A +I GD G GK+ +L+A+ ++ GRG
Sbjct: 20 SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 29.3 bits (64), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 21/150 (14%)
Query: 351 RQAYDRVAQDISTKRYQFAKMLEKNVMAEMPALKLENVCFTVNITSDKEDIS--PDGIDR 408
RQ + QD F L N++ P + +C V + K I P+G D
Sbjct: 430 RQTIGIIPQD----TILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDT 485
Query: 409 VEFYVQTNRGENPGPLMKLASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVAD 468
V RG +KL SGGE R +A I+ + P ++FDE S +
Sbjct: 486 V----VGERG------LKL-SGGEKQRVSIARAIL----KNPPIIIFDEATSSLDIITER 530
Query: 469 AIGYRLKQLSKKIQLLAVTHAPQVAARADR 498
I L LSK L + H AD
Sbjct: 531 HIQTALATLSKNRTTLVIAHRLSTITDADN 560
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 26.2 bits (56), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 25 ILSGDTGSGKSILLDALIL 43
+++G TGSGKS+ ++ +IL
Sbjct: 458 LIAGTTGSGKSVAINTMIL 476
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAV 486
L SGG+ R +A + + + ++ DE S + ++ + +L + + ++ V
Sbjct: 150 LLSGGQQQRVCIARALAVNPE----VILMDEPCSALDPIATASVEELIHELRESLTIVIV 205
Query: 487 THAPQVAARADRHFLVYKTN---KPDDTQRIETYVAVLTPQERREE 529
TH+ Q AAR + ++ + DDT ++ T P ++R +
Sbjct: 206 THSMQQAARVSQRAAMFHMGHLVEEDDTDKMFT-----APSDQRTQ 246
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 25 ILSGDTGSGKSILLDAL 41
++SG TGSGK+ LL+ L
Sbjct: 254 LISGGTGSGKTTLLNCL 270
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 23 LSILSGDTGSGKSILLDALILVTGGRGDGG 52
L IL GD GSGK+++ ALI + GG
Sbjct: 295 LRILQGDVGSGKTLV--ALIAMAAAVEAGG 322
>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 744
Score = 25.8 bits (55), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 25 ILSGDTGSGKSILLDALIL 43
+++G TGSGKS+ ++ +I+
Sbjct: 416 LVAGTTGSGKSVAINTMIM 434
>gi|254780640|ref|YP_003065053.1| hypothetical protein CLIBASIA_02635 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 110
Score = 25.0 bits (53), Expect = 3.4, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 17 IDFSAGLSILSGDTGSGKSILLDAL 41
I+F+ L+I++G G GKS L +A+
Sbjct: 46 IEFADHLTIVNGQNGYGKSSLSEAI 70
>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 26 LSGDTGSGKSILLDALI 42
LSGD GSGKS L ++I
Sbjct: 38 LSGDLGSGKSFLARSII 54
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 24.6 bits (52), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 250 ERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQYDAQELANIEERLFALRAMS 309
ER+ T D Q I + ENL + H + +S+SE Y QEL N + + + R ++
Sbjct: 686 ERQGT---DTYQAWIDDCCDIGENLWEESHSLAKSYSE--YREQEL-NYDRKRISTRTVT 739
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 23.9 bits (50), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 217 KQERIAVELSSIMDDFHKSSSPISVISSMLRRLERKS---TEVPDLLQKSISFLNE 269
++E+ AVE +++ FH S ++ +S R + S T VPD L L E
Sbjct: 334 EKEKRAVEFYNLLSSFHFMCSTPTLFNSGTRHPQLSSCFLTTVPDDLYGIFGALQE 389
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 23.9 bits (50), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 11 LIESLDIDFSAG-LSILSGDTGSGKSILLDALI 42
++ +++ F +G ++ L G +GSGKS +++ L+
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLM 400
>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 23.5 bits (49), Expect = 9.1, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 230 DDFHKSSSPISVISSMLRRLERKSTEVPDLLQKSISFLNEAQENLSDAQHEIERSFSEIQ 289
DDF + P +L R ++ ++++++ S L+ + + I+ SFS +
Sbjct: 40 DDFWQKMDP----DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
Query: 290 YDAQELANIEERL 302
YD +L +L
Sbjct: 96 YDQSDLDTRRSKL 108
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.134 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,347
Number of Sequences: 1233
Number of extensions: 12881
Number of successful extensions: 56
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 23
length of query: 554
length of database: 328,796
effective HSP length: 79
effective length of query: 475
effective length of database: 231,389
effective search space: 109909775
effective search space used: 109909775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)