HHsearch alignment for GI: 255764515 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=413.86 Aligned_cols=431 Identities=24% Similarity=0.349 Sum_probs=328.2
Q ss_pred CCCHHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 874789999999996-----79809995889986899999999999759---9949999160465699999999855888
Q gi|255764515|r 2 NLAPHQTKIVDWILD-----HKRCAIWASMGSGKTVSVLTALSYIHLWG---EKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~-----~~~~ll~~~~G~GKT~~al~~~~~l~~~~---~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~-nw~~e~~k~~~-- 414 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLS-NWKREFEKFAP-- 414 (866)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH-HHHHHHHHHCC--
T ss_conf 104889986699999877623687757523342199999998777764013578726871477776-79999986141--
Q ss_pred CCE-EEEEECCHHH----HHHH---HCC----CCCEEEECCCCHHHH--HHHCCCCCCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 815-9998589789----8887---307----798699806420233--4420001132204404531002465431156
Q gi|255764515|r 74 HMN-ISVITGTVKQ----RTKV---LKT----PAVLYVINFENLGWL--VQELKGTWPFATIVVDESTKLKSFRLRQGSK 139 (458)
Q Consensus 74 ~~~-~~~~~g~~~~----r~~~---~~~----~~~i~i~s~e~~~~~--~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~ 139 (458)
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~----s~ 490 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ----SS 490 (866)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHH----HH
T ss_conf 21002321153112103699999998621330101899999999975020554223677698997887540477----89
Q ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHH-HCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 77776654305980799658402310010134677-51788877532778877736956403300002455554558999
Q gi|255764515|r 140 TARALAKPAWESERFIELTGTPSPNGLIDLWGQIW-FLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEI 218 (458)
Q Consensus 140 ~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~-~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 218 (458)
T Consensus 491 ~~~~l~--~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~-~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~l 565 (866)
T COG0553 491 EGKALQ--FLKALNRLDLTGTPLENRLGELWSLLQEFLNPG-LLGTSFAIFTRLFEKPIQAEEDIGP--LEARELGIELL 565 (866)
T ss_pred HHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHCCHHHHHHHHCH--HHHHHHHHHHH
T ss_conf 999999--875543322899964560899999989985743-2662389999986016665432010--24567789999
Q ss_pred HHHHHHHHHHHHCCC--CC-CCCCCCEEEEEEECCHHHHHHHHHHHH---HHHHHCCC---CCC-------HHHHHHHHH
Q ss_conf 997424543320000--10-010011000345245368998889999---99851033---452-------022347888
Q gi|255764515|r 219 EAQLSDCCLSLDIAD--YQ-NIDKPILITKKVPLPQPVMKQYHKFQR---ELYCDLQG---ENI-------EAFNSASKT 282 (458)
Q Consensus 219 ~~~l~~~~~~~~~~~--~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~---~~~~~~~~---~~~-------~~~~~~~~~ 282 (458)
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 86432676540011167887486322200114763779999999986403378999988752101555546777787889
Q ss_pred HHHHHCCCCCCCCCCC-CCCHH--------------------CCC-CCCCCHHHHH-H--CCCCC--EEEEHHHHHHHHH
Q ss_conf 8754203541000223-43000--------------------134-3333256654-1--24884--0342223678886
Q gi|255764515|r 283 VKCLQLANGAVYYDEE-KHWKE--------------------VHD-EKIKALEVII-E--KANAA--PIIVAYHFNSDLA 335 (458)
Q Consensus 283 ~~l~q~~~~~~~~~~~-~~~~~--------------------~~~-~k~~~l~~il-~--~~~~~--kviif~~~~~~~~ 335 (458)
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~ 725 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLD 725 (866)
T ss_pred HHHHHHHCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH
T ss_conf 99998721864430432111212444300011024555578861530568999998889986277723488866605999
Q ss_pred HHHHC---------CCCCCC-HHHHHHHHHHHCCC-CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 64100---------026533-44589987642458-85589984422111622001785999908998986864456666
Q gi|255764515|r 336 RLQKA---------FPQGRT-LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 404 (458)
Q Consensus 336 ~i~~~---------~~~g~~-~~~r~~~i~~f~~~-~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi 404 (458)
T Consensus 726 il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~kagg~glnLt-~a~~vi~~d~~wNp~~e~Qa~dRa 804 (866)
T COG0553 726 LLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLT-GADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCC-CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999998558757987378752128899999864667757997530057661214-565246607763667999999878
Q ss_pred HCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2022020378775289999858996899999999999999999855
Q gi|255764515|r 405 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 405 ~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
T Consensus 805 -----~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 805 -----HRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred -----HHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -----76078015999984113739999999998899899998601