HHsearch alignment for GI: 255764515 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=97.68 E-value=0.00012 Score=46.36 Aligned_cols=174 Identities=23% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHH-HHH-CCCEEEEECCCCC--HHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 874789999999-996-7980999588998--6899999999999759-9949999160465699999999855888815
Q gi|255764515|r 2 NLAPHQTKIVDW-ILD-HKRCAIWASMGSG--KTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~~-~~~-~~~~ll~~~~G~G--KT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~- 161 (866)
T COG0553 84 ILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLR-AQWVVELLEKFNIRLA- 161 (866)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCCHH-
T ss_conf 21322036777766543034444310143333303332356666655543201103640245-5677877764155367-
Q ss_pred EEEEECCHHHHHHHHCC-----CCCEEEECCCCHHHH---HHHCCCCCCC---CEEECCCCCCCCCCCC-----CCHHHH
Q ss_conf 99985897898887307-----798699806420233---4420001132---2044045310024654-----311567
Q gi|255764515|r 77 ISVITGTVKQRTKVLKT-----PAVLYVINFENLGWL---VQELKGTWPF---ATIVVDESTKLKSFRL-----RQGSKT 140 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~-----~~~i~i~s~e~~~~~---~~~~~~~~~~---~~iIiDEaH~lkn~~~-----~~~s~~ 140 (458)
T Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (866)
T COG0553 162 VLDKEGLR-YLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLE 240 (866)
T ss_pred HHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf 77542224-44320122343222102444323676542000133202210023555405776412342111100245678
Q ss_pred HHHHHHHHHCCC------EEEEECCCCHHHHCCCHHHHHHHCCC
Q ss_conf 777665430598------07996584023100101346775178
Q gi|255764515|r 141 ARALAKPAWESE------RFIELTGTPSPNGLIDLWGQIWFLDK 178 (458)
Q Consensus 141 ~~~l~~~~~~~~------~~l~LTgTPi~n~~~el~~ll~~l~~ 178 (458)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (866)
T COG0553 241 YELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDP 284 (866)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 88866566404431122214441000433020000113201131