HHsearch alignment for GI: 255764515 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=100.00 E-value=6e-35 Score=229.95 Aligned_cols=349 Identities=17% Similarity=0.199 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9874789999999996----798099958899868999999999997599949999160465699999999855888815
Q gi|255764515|r 1 MNLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~ 109 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKFLLLN-DE 109 (442)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHHCCCC-CC
T ss_conf 8885999999999996222578679996799988999999999826----988999782999999999999734886-76
Q ss_pred EEEEECCHHHHHHHHCCCCCEEEECCCCHHHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-E
Q ss_conf 999858978988873077986998064202334-42000113220440453100246543115677776654305980-7
Q gi|255764515|r 77 ISVITGTVKQRTKVLKTPAVLYVINFENLGWLV-QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER-F 154 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~-~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~-~ 154 (458)
T Consensus 110 ~g~~~~~~~~~~----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-------~~~~~~~~~-~~~~~~ 176 (442)
T COG1061 110 IGIYGGGEKELE----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-------SYRRILELL-SAAYPR 176 (442)
T ss_pred CCEECCCCCCCC----C-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHH-HCCCEE
T ss_conf 603368723357----7-748999838976415555403566675999752457847-------799999975-103104
Q ss_pred EEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 996584023100101346775178887753277887773695640330000245555455899999742454332000--
Q gi|255764515|r 155 IELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIA-- 232 (458)
Q Consensus 155 l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-- 232 (458)
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~----------------------------------------------~vy~~~~~~l 210 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGP----------------------------------------------IVYEVSLKEL 210 (442)
T ss_pred EEEECCCCCCCCCCHHHHHHHCCC----------------------------------------------EEEECCHHHH
T ss_conf 677148724487752487740575----------------------------------------------5673358998
Q ss_pred -CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf -0100100110003452453689988899999985103345202234788887542035410002234300013433332
Q gi|255764515|r 233 -DYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 311 (458)
Q Consensus 233 -~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~ 311 (458)
T Consensus 211 i~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~~~~~ 272 (442)
T COG1061 211 IDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LRAEN-------------EARRIAIASERKIAA 272 (442)
T ss_pred HHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCC-----HHHHH-------------HHHHHHHHHHHHHHH
T ss_conf 337875774999986236628777403155555555543100-----13456-------------777776642899999
Q ss_pred HHHHHHCC-CCCEEEEHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf 56654124-8840342223678886641000---------2653344589987642458855899844221116220017
Q gi|255764515|r 312 LEVIIEKA-NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 381 (458)
Q Consensus 312 l~~il~~~-~~~kviif~~~~~~~~~i~~~~---------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a 381 (458)
T Consensus 273 ~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~-~vl~EGvDiP~~ 351 (442)
T COG1061 273 VRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTV-KVLDEGVDIPDA 351 (442)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EEECCCCCCCCC
T ss_conf 9999875326886699975779999999986267742466578998899999999870895299996-141266578887
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCC--EEEEEEEECCCHHHHHHHHH
Q ss_conf 859999089989868644566662022020378775--28999985899689999999
Q gi|255764515|r 382 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYLIAQNTIDELVLQRL 437 (458)
Q Consensus 382 ~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~--v~v~~li~~~tide~i~~~~ 437 (458)
T Consensus 352 -~~~i~~~~t~S~~~~~Q~lGR~LR~----~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 352 -DVLIILRPTGSRRLFIQRLGRGLRP----AEGKEDTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred -CEEEEECCCCCHHHHHHHHHHHHCC----CCCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf -5799977998799999996166347----8899965999996456764433266664