HHsearch alignment for GI: 255764515 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=99.33 E-value=3.5e-09 Score=73.85 Aligned_cols=152 Identities=22% Similarity=0.211 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHC----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCE
Q ss_conf 8747899999999967----98099958899868999999999997599949999160-465699999999855888815
Q gi|255764515|r 2 NLAPHQTKIVDWILDH----KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~----~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg----~~ 272 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG----AK 272 (730)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHHHHHC----CC
T ss_conf 038899999999997505666536767778858999999999999759-8799995653456999999999867----87
Q ss_pred EEEEEC--CHHHHHHHHC----CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHH
Q ss_conf 999858--9789888730----779869980642023344200011322044045310--02465431156777766543
Q gi|255764515|r 77 ISVITG--TVKQRTKVLK----TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 77 ~~~~~g--~~~~r~~~~~----~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~ 148 (458)
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC------CCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 453146579278999999985597159997122330------72312576997024564324777777678999999988
Q ss_pred HCCCEEEEECCCCHHH
Q ss_conf 0598079965840231
Q gi|255764515|r 149 WESERFIELTGTPSPN 164 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n 164 (458)
T Consensus 347 ~~~~pvvLgSATPSLE 362 (730)
T COG1198 347 KENAPVVLGSATPSLE 362 (730)
T ss_pred HCCCCEEEECCCCCHH
T ss_conf 6099889826887789