HHsearch alignment for GI: 255764515 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=99.33  E-value=3.5e-09  Score=73.85  Aligned_cols=152  Identities=22%  Similarity=0.211  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHC----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCE
Q ss_conf             8747899999999967----98099958899868999999999997599949999160-465699999999855888815
Q gi|255764515|r    2 NLAPHQTKIVDWILDH----KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMN   76 (458)
Q Consensus         2 ~L~p~Q~~~v~~~~~~----~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~   76 (458)
T Consensus       198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg----~~  272 (730)
T COG1198         198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG----AK  272 (730)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHHHHHC----CC
T ss_conf             038899999999997505666536767778858999999999999759-8799995653456999999999867----87


Q ss_pred             EEEEEC--CHHHHHHHHC----CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHH
Q ss_conf             999858--9789888730----779869980642023344200011322044045310--02465431156777766543
Q gi|255764515|r   77 ISVITG--TVKQRTKVLK----TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPA  148 (458)
Q Consensus        77 ~~~~~g--~~~~r~~~~~----~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~  148 (458)
T Consensus       273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~  346 (730)
T COG1198         273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK  346 (730)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC------CCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             453146579278999999985597159997122330------72312576997024564324777777678999999988


Q ss_pred             HCCCEEEEECCCCHHH
Q ss_conf             0598079965840231
Q gi|255764515|r  149 WESERFIELTGTPSPN  164 (458)
Q Consensus       149 ~~~~~~l~LTgTPi~n  164 (458)
T Consensus       347 ~~~~pvvLgSATPSLE  362 (730)
T COG1198         347 KENAPVVLGSATPSLE  362 (730)
T ss_pred             HCCCCEEEECCCCCHH
T ss_conf             6099889826887789