HHsearch alignment for GI: 255764515 and conserved domain: COG1203

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.60  E-value=1.2e-12  Score=94.85  Aligned_cols=157  Identities=14%  Similarity=0.034  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHHHC---C-CEEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             747899999999967---9-80999588998689999999999975---9994999916046569999999985588881
Q gi|255764515|r    3 LAPHQTKIVDWILDH---K-RCAIWASMGSGKTVSVLTALSYIHLW---GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM   75 (458)
Q Consensus         3 L~p~Q~~~v~~~~~~---~-~~ll~~~~G~GKT~~al~~~~~l~~~---~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~   75 (458)
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~  275 (733)
T COG1203         196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV  275 (733)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             13556799999873225575189991688871999999999975311354562899655899999999999875123554


Q ss_pred             EEEEEECCHHHHHHHHCC-CCCEEEECCCCHHHH----------------HHHC----CCCCCCCEEECCCCCCCCCCCC
Q ss_conf             599985897898887307-798699806420233----------------4420----0011322044045310024654
Q gi|255764515|r   76 NISVITGTVKQRTKVLKT-PAVLYVINFENLGWL----------------VQEL----KGTWPFATIVVDESTKLKSFRL  134 (458)
Q Consensus        76 ~~~~~~g~~~~r~~~~~~-~~~i~i~s~e~~~~~----------------~~~~----~~~~~~~~iIiDEaH~lkn~~~  134 (458)
T Consensus       276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~-~~~~  354 (733)
T COG1203         276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY-ADET  354 (733)
T ss_pred             CCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHC-CCCC
T ss_conf             331001310255651701002258881242236204522206999855740466725778876467787427541-6543


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             311567777665430598079965840
Q gi|255764515|r  135 RQGSKTARALAKPAWESERFIELTGTP  161 (458)
Q Consensus       135 ~~~s~~~~~l~~~~~~~~~~l~LTgTP  161 (458)
T Consensus       355 -~~~~l~~~i~~l~~~g~~ill~SATl  380 (733)
T COG1203         355 -MLAALLALLEALAEAGVPVLLMSATL  380 (733)
T ss_pred             -HHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             -08999999999996899789992789