HHsearch alignment for GI: 255764515 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=99.60 E-value=1.2e-12 Score=94.85 Aligned_cols=157 Identities=14% Similarity=0.034 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHC---C-CEEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 747899999999967---9-80999588998689999999999975---9994999916046569999999985588881
Q gi|255764515|r 3 LAPHQTKIVDWILDH---K-RCAIWASMGSGKTVSVLTALSYIHLW---GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~---~-~~ll~~~~G~GKT~~al~~~~~l~~~---~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 13556799999873225575189991688871999999999975311354562899655899999999999875123554
Q ss_pred EEEEEECCHHHHHHHHCC-CCCEEEECCCCHHHH----------------HHHC----CCCCCCCEEECCCCCCCCCCCC
Q ss_conf 599985897898887307-798699806420233----------------4420----0011322044045310024654
Q gi|255764515|r 76 NISVITGTVKQRTKVLKT-PAVLYVINFENLGWL----------------VQEL----KGTWPFATIVVDESTKLKSFRL 134 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~~-~~~i~i~s~e~~~~~----------------~~~~----~~~~~~~~iIiDEaH~lkn~~~ 134 (458)
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~-~~~~ 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY-ADET 354 (733)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHC-CCCC
T ss_conf 331001310255651701002258881242236204522206999855740466725778876467787427541-6543
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 311567777665430598079965840
Q gi|255764515|r 135 RQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 135 ~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
T Consensus 355 -~~~~l~~~i~~l~~~g~~ill~SATl 380 (733)
T COG1203 355 -MLAALLALLEALAEAGVPVLLMSATL 380 (733)
T ss_pred -HHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -08999999999996899789992789