HHsearch alignment for GI: 255764515 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=99.92 E-value=2.5e-23 Score=159.58 Aligned_cols=168 Identities=23% Similarity=0.191 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8747899999999-967980999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWI-LDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~-~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLE-ELGIRVGIS 109 (766)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_conf 7557899874111257986799767888669999999999998559838999075999999999866688-659779996
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC-CCCCCEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 5897898887307798699806420233442000-113220440453100246-54311567777665430598079965
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG-TWPFATIVVDESTKLKSF-RLRQGSKTARALAKPAWESERFIELT 158 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~-~~~~~~iIiDEaH~lkn~-~~~~~s~~~~~l~~~~~~~~~~l~LT 158 (458)
T Consensus 110 TgD~~~~~-~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-~~~rivgLS 187 (766)
T COG1204 110 TGDYDLDD-ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-ELIRIVGLS 187 (766)
T ss_pred CCCCCCCH-HHHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCCEEHHHHHHHHHHC-CCEEEEEEE
T ss_conf 48865553-3414588799746786676506753334016899942101487565864022798888527-551798873
Q ss_pred CCCHHHHCCCHHHHHHHCC
Q ss_conf 8402310010134677517
Q gi|255764515|r 159 GTPSPNGLIDLWGQIWFLD 177 (458)
Q Consensus 159 gTPi~n~~~el~~ll~~l~ 177 (458)
T Consensus 188 AT-lpN-~~ev---A~wL~ 201 (766)
T COG1204 188 AT-LPN-AEEV---ADWLN 201 (766)
T ss_pred EE-CCC-HHHH---HHHHC
T ss_conf 11-688-8999---99858