HHsearch alignment for GI: 255764515 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=98.53 E-value=2.8e-06 Score=56.33 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=68.2
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHCCCCC--CEEEEEECCHH
Q ss_conf 99999967980999588998689999-999999975999499991604656-999999998558888--15999858978
Q gi|255764515|r 10 IVDWILDHKRCAIWASMGSGKTVSVL-TALSYIHLWGEKSVLVIAPLRVAQ-SVWTSEVQRWSNFSH--MNISVITGTVK 85 (458)
Q Consensus 10 ~v~~~~~~~~~ll~~~~G~GKT~~al-~~~~~l~~~~~~~~LIv~P~~l~~-~~W~~Ei~kf~~~~~--~~~~~~~g~~~ 85 (458)
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~ 136 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV 136 (845)
T ss_pred HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 9999986978998679988758788999996001-668759965843899999999999983898676543799962267
Q ss_pred HHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH---HHHCCCEEEEECCCCH
Q ss_conf 9888730779869980642023344200011322044045310024654311567777665---4305980799658402
Q gi|255764515|r 86 QRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAK---PAWESERFIELTGTPS 162 (458)
Q Consensus 86 ~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~---~~~~~~~~l~LTgTPi 162 (458)
T Consensus 137 ------s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER----Sl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 137 ------SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER----SLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred ------CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf ------87714689514799999843802045877997013355----68889999999999864688705999725358
Q ss_pred HHHCCCHHHHHH
Q ss_conf 310010134677
Q gi|255764515|r 163 PNGLIDLWGQIW 174 (458)
Q Consensus 163 ~n~~~el~~ll~ 174 (458)
T Consensus 207 ~~rfs~~f~~ap 218 (845)
T COG1643 207 AERFSAYFGNAP 218 (845)
T ss_pred HHHHHHHCCCCC
T ss_conf 899997628998