HHsearch alignment for GI: 255764515 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=99.64 E-value=4.6e-14 Score=103.41 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH-HHHCCCCCCEEEEE
Q ss_conf 87478999999999679809995889986899999999999759994999916046569999999-98558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEV-QRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei-~kf~~~~~~~~~~~ 80 (458)
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~ 196 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLM 196 (1041)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC-CEEECCCHHHHHHHHHHHHHHHHHHH-HHHCCCE
T ss_conf 967899999999847995799733789855599999999987189-44861630664206799999986005-6540401
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 58978988873077986998064202334420-00113220440453100246543115677776654305980799658
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTG 159 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTg 159 (458)
T Consensus 197 TGDv-----~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG--~-VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 197 TGDV-----SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERG--V-VWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred ECCE-----EECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCC--H-HHHHHHHHCCCCCCEEEEEC
T ss_conf 0543-----42799966886099999986258610135306888766650463221--2-57899986677776899967
Q ss_pred CCHHH
Q ss_conf 40231
Q gi|255764515|r 160 TPSPN 164 (458)
Q Consensus 160 TPi~n 164 (458)
T Consensus 269 T-v~N 272 (1041)
T COG4581 269 T-VPN 272 (1041)
T ss_pred C-CCC
T ss_conf 8-898