HHsearch alignment for GI: 255764515 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=97.07 E-value=0.0089 Score=35.07 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHH---HHCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 7899999999---96798----0999588998689999999999975999499991604656999999998558888159
Q gi|255764515|r 5 PHQTKIVDWI---LDHKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 5 p~Q~~~v~~~---~~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
T Consensus 9 ~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~---~~Cg~C-----~~C~~~~~~~HPD~ 80 (329)
T PRK08058 9 ALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTC-----TNCKRIESGNHPDV 80 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCC-----HHHHHHHCCCCCCE
T ss_conf 3189999999999985996615655789998899999999999739999999---988788-----89999876999976
Q ss_pred EEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CE
Q ss_conf 9985897898887307798699806420233442000---1132204404531002465431156777766543059-80
Q gi|255764515|r 78 SVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES-ER 153 (458)
Q Consensus 78 ~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~-~~ 153 (458)
T Consensus 81 ~~i~p~~~~-------------i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m-~------~~AaNALLKtLEEPp~~ 140 (329)
T PRK08058 81 HLVAPDGQS-------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-T------ASAANSLLKFLEEPSGD 140 (329)
T ss_pred EEECCCCCC-------------CCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH-C------HHHHHHHHHHHHCCCCC
T ss_conf 774566140-------------779999999999643875788679997347762-9------99999999986468978
Q ss_pred -EEEECCC
Q ss_conf -7996584
Q gi|255764515|r 154 -FIELTGT 160 (458)
Q Consensus 154 -~l~LTgT 160 (458)
T Consensus 141 t~fIL~t~ 148 (329)
T PRK08058 141 TTAILLTE 148 (329)
T ss_pred CEEEEEEC
T ss_conf 67998729