HHsearch alignment for GI: 255764515 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=99.85 E-value=3.6e-18 Score=128.33 Aligned_cols=148 Identities=19% Similarity=0.293 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHH---CC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 4789999999996---79---8099958899868999999999997599949999160465699999999-855888815
Q gi|255764515|r 4 APHQTKIVDWILD---HK---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQ-RWSNFSHMN 76 (458)
Q Consensus 4 ~p~Q~~~v~~~~~---~~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~-kf~~~~~~~ 76 (458)
T Consensus 602 T~DQl~AI~eV~~DMes~~PMDRLiCGDVGfGKTEVA~RAAFkav-~~gkQVavlvPTTiLA~QH~~tF~~Rf~~~-pv~ 679 (1148)
T PRK10689 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-ENHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVR 679 (1148)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHHHHCC-CCE
T ss_conf 768999999998776388677415676888877999999999999-639808998366223799999999876415-733
Q ss_pred EEEEEC--CHHHHHHH----HCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999858--97898887----307798699806420233442000113220440453100246543115677776654305
Q gi|255764515|r 77 ISVITG--TVKQRTKV----LKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 77 ~~~~~g--~~~~r~~~----~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
T Consensus 680 i~~LsRf~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv----~f~~LGLlIiDEEqrF-------GV~~KE~lk~l~-~ 747 (1148)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV----KWKDLGLLIVDEEHRF-------GVRHKERIKAMR-A 747 (1148)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCC----CCCCCCEEEECCCHHC-------CHHHHHHHHHCC-C
T ss_conf 775038888999999999986699877620488866986----5466643786010213-------799999997228-9
Q ss_pred CCEEEEECCCCHHHH
Q ss_conf 980799658402310
Q gi|255764515|r 151 SERFIELTGTPSPNG 165 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~ 165 (458)
T Consensus 748 ~vdvLtltATPIPRT 762 (1148)
T PRK10689 748 DVDILTLTATPIPRT 762 (1148)
T ss_pred CCCEEEEECCCCHHH
T ss_conf 987897625564469