HHsearch alignment for GI: 255764515 and conserved domain: PRK11192
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional.
Probab=99.96 E-value=7.4e-26 Score=174.89 Aligned_cols=322 Identities=18% Similarity=0.242 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHH-----HCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996798099958899868999-99999999-----759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIH-----LWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~-----~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
T Consensus 25 ~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l~~~~~i 104 (417)
T PRK11192 25 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHL 104 (417)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999997799889989998679999999999998752103689964999947199999999999986400573
Q ss_pred EEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 599985897--8988873077986998064202334420-0011322044045310024654311567777665430598
Q gi|255764515|r 76 NISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESE 152 (458)
Q Consensus 76 ~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~ 152 (458)
T Consensus 105 ~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD~mld~gF---~~~i~~I~~~~~~~~ 181 (417)
T PRK11192 105 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGF---AQDVEHIAAETRWRK 181 (417)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC---HHHHHHHHHHCCCCC
T ss_conf 05998568787999999836999899786077778863670104574899967552111354---789999986476772
Q ss_pred EEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07996584023100101346775178887753277887773695640330000245555455899999742454332000
Q gi|255764515|r 153 RFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIA 232 (458)
Q Consensus 153 ~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (458)
T Consensus 182 Q~llfSATl~~~~v~~--------------------l~~~~l~~p---------------------------~~i~~~~~ 214 (417)
T PRK11192 182 QTLLFSATLEGDGVQD--------------------FAERLLNDP---------------------------VEVDAEPS 214 (417)
T ss_pred EEEEEEEECCHHHHHH--------------------HHHHHCCCC---------------------------EEEEECCC
T ss_conf 3899973268478999--------------------999836798---------------------------89996467
Q ss_pred CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf 01001001100034524536899888999999851033452022347888875420354100022343000134333325
Q gi|255764515|r 233 DYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 312 (458)
Q Consensus 233 ~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l 312 (458)
T Consensus 215 ~---~~~~~-i~q~~~~~----------------------------------------------------~~~~~k~~~L 238 (417)
T PRK11192 215 R---RERKK-IHQWYYRA----------------------------------------------------DDLEHKTALL 238 (417)
T ss_pred C---CCCCC-EEEEEEEE----------------------------------------------------CCHHHHHHHH
T ss_conf 6---66674-36999993----------------------------------------------------7689999999
Q ss_pred HHHHHCCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCC
Q ss_conf 6654124884034222367888664100----------026533445899876424588558998442211162200178
Q gi|255764515|r 313 EVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 382 (458)
Q Consensus 313 ~~il~~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~ 382 (458)
T Consensus 239 ~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaT-DvaaRGiDi~~-V 316 (417)
T PRK11192 239 CHLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVAT-DVAARGIDIDD-I 316 (417)
T ss_pred HHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCCCC-C
T ss_conf 999853476652153112466768988653148835754001799999999999976999899981-24346777046-9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 5999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 383 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 383 ~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
T Consensus 317 ~~VInyd~P~~~~~YvHRiGRTG-----R~G~~G--~ait~v~~~--d~~~~~~ie~~ 365 (417)
T PRK11192 317 SHVINFDMPRSADTYLHRIGRTG-----RAGKKG--TAISLVEAH--DHLLLGKIERY 365 (417)
T ss_pred CEEEEECCCCCHHHHHHHCCHHH-----CCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf 88999799998889233067723-----489954--899987489--99999999999