HHsearch alignment for GI: 255764515 and conserved domain: PRK13889

>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=97.25  E-value=0.0096  Score=34.86  Aligned_cols=131  Identities=17%  Similarity=0.110  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             874789999999996798-0999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r    2 NLAPHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI   80 (458)
Q Consensus         2 ~L~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~   80 (458)
T Consensus       346 ~Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKStmL-~aAReawEa~GyrV~GaALsGkAA----egLe~~---sGI~SrTl  417 (992)
T PRK13889        346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAA----ENLEGG---SGIASRTI  417 (992)
T ss_pred             CCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHHHHHCCCEEEEECCCHHHH----HHHHHC---CCCCCHHH
T ss_conf             8799999999986478975899833888788999-999999997798898115006899----976534---79431679


Q ss_pred             ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             58978988873077986998064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r   81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT  160 (458)
Q Consensus        81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT  160 (458)
T Consensus       418 As----~e~~w~-----------------~g~~~L~~~dVlVVDEAGMVg------SRqMarll-~~Ae~AGAKVVLVGD  469 (992)
T PRK13889        418 AS----LEHGWG-----------------QGRDLLTARDVLVIDEAGMVG------TRQLERVL-SHAADAGAKVVLVGD  469 (992)
T ss_pred             HH----HHHHHH-----------------CCCCCCCCCCEEEEECCCCCC------HHHHHHHH-HHHHHCCCEEEEECC
T ss_conf             99----999874-----------------673347898589996765577------49999999-999984998999488


Q ss_pred             CHHHHCCC
Q ss_conf             02310010
Q gi|255764515|r  161 PSPNGLID  168 (458)
Q Consensus       161 Pi~n~~~e  168 (458)
T Consensus       470 ~~QLq~Ie  477 (992)
T PRK13889        470 PQQLQAIE  477 (992)
T ss_pred             HHHCCCCC
T ss_conf             77718864