HHsearch alignment for GI: 255764515 and conserved domain: PRK13889
>PRK13889 conjugal transfer relaxase TraA; Provisional.
Probab=97.25 E-value=0.0096 Score=34.86 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798-0999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
T Consensus 346 ~Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKStmL-~aAReawEa~GyrV~GaALsGkAA----egLe~~---sGI~SrTl 417 (992)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAA----ENLEGG---SGIASRTI 417 (992)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHHHHHCCCEEEEECCCHHHH----HHHHHC---CCCCCHHH
T ss_conf 8799999999986478975899833888788999-999999997798898115006899----976534---79431679
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 58978988873077986998064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
T Consensus 418 As----~e~~w~-----------------~g~~~L~~~dVlVVDEAGMVg------SRqMarll-~~Ae~AGAKVVLVGD 469 (992)
T PRK13889 418 AS----LEHGWG-----------------QGRDLLTARDVLVIDEAGMVG------TRQLERVL-SHAADAGAKVVLVGD 469 (992)
T ss_pred HH----HHHHHH-----------------CCCCCCCCCCEEEEECCCCCC------HHHHHHHH-HHHHHCCCEEEEECC
T ss_conf 99----999874-----------------673347898589996765577------49999999-999984998999488
Q ss_pred CHHHHCCC
Q ss_conf 02310010
Q gi|255764515|r 161 PSPNGLID 168 (458)
Q Consensus 161 Pi~n~~~e 168 (458)
T Consensus 470 ~~QLq~Ie 477 (992)
T PRK13889 470 PQQLQAIE 477 (992)
T ss_pred HHHCCCCC
T ss_conf 77718864