HHsearch alignment for GI: 255764515 and conserved domain: TIGR00596
>TIGR00596 rad1 DNA repair protein (rad1); InterPro: IPR006167 All proteins in this family, for which functions are known, are components in a multiprotein endonuclease complex, usually made up of Rad1 and Rad10 homologues. This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologues of these genes, but the function of the Archaeal proteins is not known, so are not included in this family.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006281 DNA repair.
Probab=92.41 E-value=0.28 Score=25.97 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=50.4
Q ss_pred CEEEEEHHHCCCCCCCCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCH-HCCCC-CCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 589984422111622001-785999908998986864456666202202-03787-752899998589968999999999
Q gi|255764515|r 363 PLLFAHPASCGHGLNLQY-GGNILVFFSLWWDLEEHQQMIERIGVTRQR-QAGFK-RAVFVYYLIAQNTIDELVLQRLRT 439 (458)
Q Consensus 363 ~vli~s~~~~~~GlnL~~-a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~h-R~Gq~-~~v~v~~li~~~tide~i~~~~~~ 439 (458)
T Consensus 542 eilistfksL~~nC~L~e~~P~Yvimy~~d~~FIR--q~E----VY~A~v~~~~p~drmrVYFlyYGgS~EEQ~YLts~R 615 (939)
T TIGR00596 542 EILISTFKSLEDNCVLEELKPRYVIMYEPDVSFIR--QVE----VYKASVRPLRPLDRMRVYFLYYGGSVEEQRYLTSVR 615 (939)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEE--EEE----EEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 10122334320033100278535898578879221--478----898885388695512577876177267877876788
Q ss_pred H-HHHHHHHHH
Q ss_conf 9-999999985
Q gi|255764515|r 440 K-STIQDLLLN 449 (458)
Q Consensus 440 K-~~~~~~~~~ 449 (458)
T Consensus 616 REKdAF~kLIr 626 (939)
T TIGR00596 616 REKDAFEKLIR 626 (939)
T ss_pred HHHHHHHHHHH
T ss_conf 88888878864