HHsearch alignment for GI: 255764515 and conserved domain: TIGR00635

>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.38  E-value=0.24  Score=26.36  Aligned_cols=24  Identities=17%  Similarity=0.207  Sum_probs=18.6

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             980999588998689999999999
Q gi|255764515|r   18 KRCAIWASMGSGKTVSVLTALSYI   41 (458)
Q Consensus        18 ~~~ll~~~~G~GKT~~al~~~~~l   41 (458)
T Consensus        31 DH~LL~GPPGLGKTTLA~IiA~Em   54 (305)
T TIGR00635        31 DHLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             416631756874678999999983