HHsearch alignment for GI: 255764515 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.92 E-value=2e-22 Score=154.07 Aligned_cols=314 Identities=16% Similarity=0.237 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHH-----CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996-----79-809995889986899999999999759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILD-----HK-RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~-----~~-~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
T Consensus 307 ~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~G-YQ~ALMAPTEiLA~QHy~~~~~~l~p~~~ 385 (721)
T TIGR00643 307 ELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESG-YQVALMAPTEILAEQHYDSLRNLLAPLGI 385 (721)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77677899999999861478753222110106638999999999998469-80999177689999999999996235485
Q ss_pred EEEEEECCHHH--HHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 59998589789--888----730779869980642023344200011322044045310024654311567777665430
Q gi|255764515|r 76 NISVITGTVKQ--RTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 76 ~~~~~~g~~~~--r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
T Consensus 386 ~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiq----e~vef~~L~lVIiDEQHRF------GV~QR~~L~~KG~~ 455 (721)
T TIGR00643 386 EVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQ----EKVEFKRLGLVIIDEQHRF------GVEQRKKLREKGQE 455 (721)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHH----HHHHHHCCCEEEEECCCCC------HHHHHHHHHHHHHC
T ss_conf 7888615667878999999986395205733135545----2144314774899323356------07899999986220
Q ss_pred C-----CCEEEEECCCCHHHHCC-CHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5-----98079965840231001-01346775178887753277887773695640330000245555455899999742
Q gi|255764515|r 150 E-----SERFIELTGTPSPNGLI-DLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLS 223 (458)
Q Consensus 150 ~-----~~~~l~LTgTPi~n~~~-el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (458)
T Consensus 456 ~~~~G~~PH~L~MtATPIPRTLALt~yGD--------------------------------------------------- 484 (721)
T TIGR00643 456 GSMIGFAPHVLVMTATPIPRTLALTVYGD--------------------------------------------------- 484 (721)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHC---------------------------------------------------
T ss_conf 68867777764663788147899776500---------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCC--CCCEEEEEEECCHH---HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 454332000010010--01100034524536---8998889999998510334520223478888754203541000223
Q gi|255764515|r 224 DCCLSLDIADYQNID--KPILITKKVPLPQP---VMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE 298 (458)
Q Consensus 224 ~~~~~~~~~~~~~l~--~~~~~~~~v~l~~~---~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~ 298 (458)
T Consensus 485 -----ld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~G---rQaYv------------v--~Pl----- 537 (721)
T TIGR00643 485 -----LDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKG---RQAYV------------V--YPL----- 537 (721)
T ss_pred -----CEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCC---CCEEE------------E--ECC-----
T ss_conf -----00334316854593389988842788775689999999998328---90899------------9--644-----
Q ss_pred CCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHH-HHHHHC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCC
Q ss_conf 430001343333256654124884034222367888-664100-026533445899876424588558998442211162
Q gi|255764515|r 299 KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL-ARLQKA-FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 376 (458)
Q Consensus 299 ~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~-~~i~~~-~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gl 376 (458)
T Consensus 538 ----I~ESE~lp~lk~A~~~--------~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsT-TVIEVGV 604 (721)
T TIGR00643 538 ----IEESEKLPDLKAAEAL--------YERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVST-TVIEVGV 604 (721)
T ss_pred ----CCCCCCCCHHHHHHHH--------HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-EEEEEEE
T ss_conf ----0320047168999999--------99988861221001133068984789999998521583699997-6899986
Q ss_pred CCCCCCCEEEEECCC-CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 200178599990899-89868644566662022020378775289999858
Q gi|255764515|r 377 NLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 377 nL~~a~~~iI~~~~~-wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
T Consensus 605 DVPnA-tvMVIe~AeRFGLSQLHQLRGRVG-----RG~~~SyC---~L~~k 646 (721)
T TIGR00643 605 DVPNA-TVMVIEDAERFGLSQLHQLRGRVG-----RGDHQSYC---LLVYK 646 (721)
T ss_pred ECCCC-CEEEEECCCHHHHHHHHHHCEEEC-----CCCCCCEE---EEECC
T ss_conf 17977-278886655103688876350012-----68975079---98125