HHsearch alignment for GI: 255764515 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=99.15 E-value=3.8e-08 Score=67.58 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=78.3
Q ss_pred HHHHHHCCCCCEEEEHHHHHH---HHHHHH--------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 566541248840342223678---886641--------000265334458998764245885589984422111622001
Q gi|255764515|r 312 LEVIIEKANAAPIIVAYHFNS---DLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 312 l~~il~~~~~~kviif~~~~~---~~~~i~--------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
T Consensus 757 I~e~~~~~~~~~LVLFTS~~mL~~V~~~l~~l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~-~SFWEGvDf~~ 835 (944)
T TIGR01407 757 IVELAALESPKILVLFTSKEMLKAVYDLLKELSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGA-SSFWEGVDFPG 835 (944)
T ss_pred HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECC-CCEECCCCCCC
T ss_conf 99997206896275164899999999985302002580667412677857899998614787566115-54002401179
Q ss_pred CCCE-EEEECCCCCH------------------------------HHHHHHHHHHHCCCCHHCCCCCC-EEEEE--EEEC
Q ss_conf 7859-9990899898------------------------------68644566662022020378775-28999--9858
Q gi|255764515|r 381 GGNI-LVFFSLWWDL------------------------------EEHQQMIERIGVTRQRQAGFKRA-VFVYY--LIAQ 426 (458)
Q Consensus 381 a~~~-iI~~~~~wn~------------------------------~~~~Q~~gRi~~~r~hR~Gq~~~-v~v~~--li~~ 426 (458)
T Consensus 836 ~~~~~lvi~RLPF~nP~~pL~kk~~~~~~~EG~npF~~~~lP~A~~RlrQalGRli-----R~e~drg~~~~LD~Rl~~~ 910 (944)
T TIGR01407 836 NELVILVIPRLPFANPKEPLTKKKLQKLEEEGKNPFYDYALPMAILRLRQALGRLI-----RRENDRGSILVLDKRLVTK 910 (944)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHC-----CCCCCCEEEEEECCCCCCC
T ss_conf 97179998528677885389999998854311464111013079999877510002-----5523554689971101160
Q ss_pred C---CHHHHHHHHHHHHHHH--HHHHHHHHHC
Q ss_conf 9---9689999999999999--9999855413
Q gi|255764515|r 427 N---TIDELVLQRLRTKSTI--QDLLLNALKK 453 (458)
Q Consensus 427 ~---tide~i~~~~~~K~~~--~~~~~~~~~~ 453 (458)
T Consensus 911 ~Ygk~~~~~L~~~~~~K~~~qq~~~~~~~ik~ 942 (944)
T TIGR01407 911 RYGKRFLKSLPEVLSVKGLSQQLEELLEEIKE 942 (944)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47899998400015467603568999999972