HHsearch alignment for GI: 255764515 and conserved domain: TIGR01448

>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.63  E-value=0.00034  Score=43.63  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHH-----H----CCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf             987478999999999679809995889986899999999---999-----7----5999499991604656999999998
Q gi|255764515|r    1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS---YIH-----L----WGEKSVLVIAPLRVAQSVWTSEVQR   68 (458)
Q Consensus         1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~---~l~-----~----~~~~~~LIv~P~~l~~~~W~~Ei~k   68 (458)
T Consensus       349 ~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAA-kRl~E~--  425 (769)
T TIGR01448       349 LKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAA-KRLAEV--  425 (769)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHH-HHCCCC--
T ss_conf             77068899999998609489985778886168999999999871687755312456776488737743788-851100--


Q ss_pred             HCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             55888815999858978988873077986998064202334420001132204404531002465431156777766543
Q gi|255764515|r   69 WSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA  148 (458)
Q Consensus        69 f~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~  148 (458)
T Consensus       426 -TG~~a~TIHRLlG~--------~~---------~~-~~~~k~~~~~~~~DL~IvDE~SM~------Dt~L~~~lL~a~P  480 (769)
T TIGR01448       426 -TGLEALTIHRLLGY--------GS---------DT-KSENKNLEDPIDADLLIVDESSMV------DTWLASSLLAAVP  480 (769)
T ss_pred             -CCCHHHHHHHHHCC--------CC---------CC-CCCCHHHCCCCCCCEEEEECCCHH------HHHHHHHHHHHCC
T ss_conf             -26212347786368--------98---------88-732110113478776998146218------8999999986179


Q ss_pred             HCCCEEEEECCC
Q ss_conf             059807996584
Q gi|255764515|r  149 WESERFIELTGT  160 (458)
Q Consensus       149 ~~~~~~l~LTgT  160 (458)
T Consensus       481 ~~a--~lllVGD  490 (769)
T TIGR01448       481 DHA--RLLLVGD  490 (769)
T ss_pred             CCC--EEEEECC
T ss_conf             777--7988837