HHsearch alignment for GI: 255764515 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.63 E-value=0.00034 Score=43.63 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHH-----H----CCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 987478999999999679809995889986899999999---999-----7----5999499991604656999999998
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS---YIH-----L----WGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~---~l~-----~----~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
T Consensus 349 ~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAA-kRl~E~-- 425 (769)
T TIGR01448 349 LKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAA-KRLAEV-- 425 (769)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHH-HHCCCC--
T ss_conf 77068899999998609489985778886168999999999871687755312456776488737743788-851100--
Q ss_pred HCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 55888815999858978988873077986998064202334420001132204404531002465431156777766543
Q gi|255764515|r 69 WSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 69 f~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
T Consensus 426 -TG~~a~TIHRLlG~--------~~---------~~-~~~~k~~~~~~~~DL~IvDE~SM~------Dt~L~~~lL~a~P 480 (769)
T TIGR01448 426 -TGLEALTIHRLLGY--------GS---------DT-KSENKNLEDPIDADLLIVDESSMV------DTWLASSLLAAVP 480 (769)
T ss_pred -CCCHHHHHHHHHCC--------CC---------CC-CCCCHHHCCCCCCCEEEEECCCHH------HHHHHHHHHHHCC
T ss_conf -26212347786368--------98---------88-732110113478776998146218------8999999986179
Q ss_pred HCCCEEEEECCC
Q ss_conf 059807996584
Q gi|255764515|r 149 WESERFIELTGT 160 (458)
Q Consensus 149 ~~~~~~l~LTgT 160 (458)
T Consensus 481 ~~a--~lllVGD 490 (769)
T TIGR01448 481 DHA--RLLLVGD 490 (769)
T ss_pred CCC--EEEEECC
T ss_conf 777--7988837