HHsearch alignment for GI: 255764515 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.65 E-value=9.6e-05 Score=46.98 Aligned_cols=105 Identities=9% Similarity=0.047 Sum_probs=60.6
Q ss_pred CCCHHHHHHCCCC-----CEEEEHHHH----HHHHHHHHHCCCCC---------CCHHHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf 3325665412488-----403422236----78886641000265---------33445899876424588558998442
Q gi|255764515|r 309 IKALEVIIEKANA-----APIIVAYHF----NSDLARLQKAFPQG---------RTLDKDPCTIQEWNEGKIPLLFAHPA 370 (458)
Q Consensus 309 ~~~l~~il~~~~~-----~kviif~~~----~~~~~~i~~~~~~g---------~~~~~r~~~i~~f~~~~~~vli~s~~ 370 (458)
T Consensus 281 ~~AvdEL~~e~~~eGkGPGDiLIFlpGEREIRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~R---vF~pHsGRRIVLaTN 357 (1320)
T TIGR01967 281 LAAVDELVAEGPDEGKGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQR---VFQPHSGRRIVLATN 357 (1320)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHCCHHHCCC---CCCCCCCCEEEEECC
T ss_conf 99999997427555789972676378886368999998446878704405522158644744---006859623453301
Q ss_pred HCCCCCCCCCCCCEEEEECCC--------------------CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 211162200178599990899--------------------898686445666620220203787752899998589
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLW--------------------WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~--------------------wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
T Consensus 358 VAETSLTVP-GI~YVI--DtGtARiSRYS~RTKVQRLPIEpISQASANQRkGRC-----GRV~---~GICIRLYSE~ 423 (1320)
T TIGR01967 358 VAETSLTVP-GIRYVI--DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRC-----GRVA---PGICIRLYSEE 423 (1320)
T ss_pred HHHHHCCCC-CCCCEE--CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC-----CCCC---CCEEEECCCHH
T ss_conf 013305788-711135--688532000100330133676603122320068875-----4147---77047557757