HHsearch alignment for GI: 255764515 and conserved domain: TIGR01967

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.65  E-value=9.6e-05  Score=46.98  Aligned_cols=105  Identities=9%  Similarity=0.047  Sum_probs=60.6

Q ss_pred             CCCHHHHHHCCCC-----CEEEEHHHH----HHHHHHHHHCCCCC---------CCHHHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf             3325665412488-----403422236----78886641000265---------33445899876424588558998442
Q gi|255764515|r  309 IKALEVIIEKANA-----APIIVAYHF----NSDLARLQKAFPQG---------RTLDKDPCTIQEWNEGKIPLLFAHPA  370 (458)
Q Consensus       309 ~~~l~~il~~~~~-----~kviif~~~----~~~~~~i~~~~~~g---------~~~~~r~~~i~~f~~~~~~vli~s~~  370 (458)
T Consensus       281 ~~AvdEL~~e~~~eGkGPGDiLIFlpGEREIRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~R---vF~pHsGRRIVLaTN  357 (1320)
T TIGR01967       281 LAAVDELVAEGPDEGKGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQR---VFQPHSGRRIVLATN  357 (1320)
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHCCHHHCCC---CCCCCCCCEEEEECC
T ss_conf             99999997427555789972676378886368999998446878704405522158644744---006859623453301


Q ss_pred             HCCCCCCCCCCCCEEEEECCC--------------------CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf             211162200178599990899--------------------898686445666620220203787752899998589
Q gi|255764515|r  371 SCGHGLNLQYGGNILVFFSLW--------------------WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN  427 (458)
Q Consensus       371 ~~~~GlnL~~a~~~iI~~~~~--------------------wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~  427 (458)
T Consensus       358 VAETSLTVP-GI~YVI--DtGtARiSRYS~RTKVQRLPIEpISQASANQRkGRC-----GRV~---~GICIRLYSE~  423 (1320)
T TIGR01967       358 VAETSLTVP-GIRYVI--DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRC-----GRVA---PGICIRLYSEE  423 (1320)
T ss_pred             HHHHHCCCC-CCCCEE--CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC-----CCCC---CCEEEECCCHH
T ss_conf             013305788-711135--688532000100330133676603122320068875-----4147---77047557757