HHsearch alignment for GI: 255764515 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=1.3e-15 Score=112.89 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCC----CCCCEEE
Q ss_conf 89999999996798--099958899868999999999997599949999160-4656999999998558----8881599
Q gi|255764515|r 6 HQTKIVDWILDHKR--CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSN----FSHMNIS 78 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~--~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~----~~~~~~~ 78 (458)
T Consensus 1 hq~~~~~~~~~~~~~~ivitAPTgsGKT~Aa~lp~--l--~~~~~~lyi~P~kAL~~Dq-~~~l~~~~~~~~~~~~~~~~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPL--L--HGENDTIALYPTNALIEDQ-TEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH--H--HCCCCEEEECCHHHHHHHH-HHHHHHHHHHHCCCCCCCEE
T ss_conf 96899999976899869998999856999999999--7--3898799977789999999-99999999874423464402
Q ss_pred EEECCH----------------------HHHHHHHCCCCCEEEECCCCHHHHHHHCC---------CCCCCCEEECCCCC
Q ss_conf 985897----------------------89888730779869980642023344200---------01132204404531
Q gi|255764515|r 79 VITGTV----------------------KQRTKVLKTPAVLYVINFENLGWLVQELK---------GTWPFATIVVDEST 127 (458)
Q Consensus 79 ~~~g~~----------------------~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---------~~~~~~~iIiDEaH 127 (458)
T Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDEiH 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEH
T ss_conf 11464323344465555343445410256654302589909992889999997620136510399998516747756200
Q ss_pred CCCCCCCCCHHHHHHHHH--HHHHCCCEEEEECCCCHH
Q ss_conf 002465431156777766--543059807996584023
Q gi|255764515|r 128 KLKSFRLRQGSKTARALA--KPAWESERFIELTGTPSP 163 (458)
Q Consensus 128 ~lkn~~~~~~s~~~~~l~--~~~~~~~~~l~LTgTPi~ 163 (458)
T Consensus 156 ~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 00676208999999999998633689808998279980