HHsearch alignment for GI: 255764515 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.58 E-value=0.29 Score=25.89 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=23.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 09995889986899999999999759994999916
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~-~kV~lit~ 36 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG-KKVLLVAA 36 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEC
T ss_conf 99989999988999999999999769-92899974