Query gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 458
No_of_seqs 150 out of 6333
Neff 10.2
Searched_HMMs 39220
Date Mon May 30 06:31:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764515.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 consensus 100.0 0 0 517.8 33.2 422 2-451 167-623 (971)
2 KOG0384 consensus 100.0 0 0 514.2 32.1 419 1-452 369-836 (1373)
3 KOG0389 consensus 100.0 0 0 506.0 30.6 436 1-454 398-915 (941)
4 KOG0392 consensus 100.0 0 0 503.6 29.1 431 2-450 975-1477(1549)
5 KOG0387 consensus 100.0 0 0 496.0 30.3 428 2-450 205-681 (923)
6 KOG0390 consensus 100.0 0 0 468.7 30.4 430 1-451 237-731 (776)
7 KOG0391 consensus 100.0 0 0 438.3 26.7 428 2-450 615-1410(1958)
8 KOG0388 consensus 100.0 0 0 429.4 29.1 420 2-452 567-1179(1185)
9 KOG4439 consensus 100.0 0 0 431.6 26.8 420 2-450 325-881 (901)
10 KOG0386 consensus 100.0 0 0 433.5 21.5 432 2-452 394-863 (1157)
11 KOG1015 consensus 100.0 0 0 426.4 25.0 433 1-450 667-1300(1567)
12 KOG1000 consensus 100.0 0 0 412.0 25.9 406 2-447 198-623 (689)
13 KOG1002 consensus 100.0 0 0 410.7 27.0 430 1-450 183-772 (791)
14 COG0553 HepA Superfamily II DN 100.0 0 0 413.9 24.1 431 2-450 338-845 (866)
15 PRK04914 ATP-dependent helicas 100.0 0 0 394.5 30.6 408 1-444 150-622 (955)
16 KOG1016 consensus 100.0 0 0 351.1 20.7 434 3-451 255-873 (1387)
17 KOG1001 consensus 100.0 0 0 340.2 20.5 403 18-449 153-672 (674)
18 pfam00176 SNF2_N SNF2 family N 100.0 0 0 324.9 24.8 276 6-293 1-295 (295)
19 PRK13766 Hef nuclease; Provisi 100.0 4.8E-42 0 273.0 28.1 426 1-450 14-501 (764)
20 COG1111 MPH1 ERCC4-like helica 100.0 1.2E-36 3.2E-41 240.1 29.4 427 1-450 14-504 (542)
21 COG1061 SSL2 DNA or RNA helica 100.0 6E-35 1.5E-39 229.9 23.4 349 1-437 35-404 (442)
22 KOG0354 consensus 100.0 1.1E-32 2.9E-37 216.2 28.4 418 1-451 61-552 (746)
23 KOG0298 consensus 100.0 1.7E-33 4.4E-38 221.1 18.6 151 18-177 375-565 (1394)
24 KOG0383 consensus 100.0 2.8E-36 7.1E-41 238.0 3.9 347 3-375 296-696 (696)
25 TIGR00603 rad25 DNA repair hel 100.0 1.6E-34 4.1E-39 227.3 12.3 335 2-431 269-634 (756)
26 PRK11192 ATP-dependent RNA hel 100.0 7.4E-26 1.9E-30 174.9 28.4 322 2-440 25-365 (417)
27 PRK13767 ATP-dependent helicas 100.0 1E-25 2.6E-30 174.0 23.5 321 2-428 32-398 (878)
28 PRK10590 ATP-dependent RNA hel 100.0 5.7E-25 1.5E-29 169.5 26.9 320 2-440 23-363 (457)
29 KOG1123 consensus 100.0 1.6E-26 4.2E-31 178.9 17.5 334 2-432 302-658 (776)
30 PRK11776 ATP-dependent RNA hel 100.0 1E-24 2.6E-29 168.0 26.4 318 2-439 26-359 (459)
31 PRK00254 ski2-like helicase; P 100.0 2.6E-25 6.5E-30 171.6 23.4 165 2-177 23-190 (717)
32 PRK04537 ATP-dependent RNA hel 99.9 5.3E-24 1.4E-28 163.6 28.9 310 2-427 31-364 (574)
33 PRK01172 ski2-like helicase; P 99.9 1.6E-25 4E-30 172.9 20.6 167 1-177 21-190 (674)
34 PRK11448 hsdR type I restricti 99.9 7.5E-26 1.9E-30 174.9 14.1 350 1-413 415-807 (1126)
35 PRK01297 ATP-dependent RNA hel 99.9 4.8E-23 1.2E-27 157.8 28.3 320 3-440 107-450 (472)
36 PRK02362 ski2-like helicase; P 99.9 1.1E-23 2.7E-28 161.8 24.8 165 2-177 23-192 (736)
37 PRK04837 ATP-dependent RNA hel 99.9 4.3E-23 1.1E-27 158.1 27.2 309 2-427 31-363 (423)
38 PRK11634 ATP-dependent RNA hel 99.9 3.6E-23 9.2E-28 158.6 24.1 308 2-426 28-351 (629)
39 COG1201 Lhr Lhr-like helicases 99.9 7.6E-23 1.9E-27 156.6 25.0 318 2-433 22-366 (814)
40 PTZ00110 helicase; Provisional 99.9 4.7E-22 1.2E-26 151.8 27.0 309 4-427 206-535 (602)
41 COG1204 Superfamily II helicas 99.9 2.5E-23 6.3E-28 159.6 20.0 168 2-177 31-201 (766)
42 TIGR00643 recG ATP-dependent D 99.9 2E-22 5.1E-27 154.1 21.9 314 2-426 307-646 (721)
43 PRK11057 ATP-dependent DNA hel 99.9 3.5E-21 8.8E-26 146.6 23.7 295 2-422 25-340 (607)
44 smart00487 DEXDc DEAD-like hel 99.9 2E-22 5.1E-27 154.1 15.7 159 2-163 8-172 (201)
45 PRK10917 ATP-dependent DNA hel 99.9 2.2E-20 5.7E-25 141.7 25.8 307 2-428 257-585 (677)
46 COG0513 SrmB Superfamily II DN 99.9 6.1E-20 1.6E-24 139.0 26.9 324 2-440 51-392 (513)
47 KOG0331 consensus 99.9 2.9E-20 7.3E-25 141.0 22.4 322 3-439 114-462 (519)
48 COG1205 Distinct helicase fami 99.9 1.1E-19 2.9E-24 137.4 24.0 327 2-435 70-430 (851)
49 COG4096 HsdR Type I site-speci 99.9 2.6E-21 6.6E-26 147.4 15.4 349 1-424 164-545 (875)
50 COG1200 RecG RecG-like helicas 99.9 5.2E-20 1.3E-24 139.4 21.8 309 2-428 262-591 (677)
51 PRK10689 transcription-repair 99.9 3.6E-18 9.1E-23 128.3 25.1 148 4-165 602-762 (1148)
52 pfam04851 ResIII Type III rest 99.9 7.3E-21 1.9E-25 144.6 11.2 101 1-162 2-102 (103)
53 KOG0330 consensus 99.9 9.3E-19 2.4E-23 131.9 21.7 316 3-437 84-415 (476)
54 TIGR00580 mfd transcription-re 99.8 9.1E-19 2.3E-23 131.9 18.6 299 5-426 511-830 (997)
55 COG4889 Predicted helicase [Ge 99.8 1.7E-19 4.3E-24 136.4 14.8 154 2-162 161-351 (1518)
56 COG1197 Mfd Transcription-repa 99.8 2.7E-17 7E-22 123.0 24.7 148 4-165 596-756 (1139)
57 KOG0952 consensus 99.8 1.8E-17 4.6E-22 124.1 23.0 341 16-431 125-495 (1230)
58 TIGR01389 recQ ATP-dependent D 99.8 4.2E-18 1.1E-22 127.9 19.6 324 2-449 13-367 (607)
59 COG0514 RecQ Superfamily II DN 99.8 5.3E-17 1.3E-21 121.3 22.6 300 2-427 17-337 (590)
60 PRK09751 putative ATP-dependen 99.8 3.8E-17 9.8E-22 122.1 20.2 338 22-421 1-381 (1490)
61 TIGR00614 recQ_fam ATP-depende 99.8 6.1E-17 1.6E-21 120.9 20.9 308 2-424 11-348 (497)
62 cd00046 DEXDc DEAD-like helica 99.8 2.8E-18 7E-23 129.0 13.2 140 18-161 1-144 (144)
63 COG1202 Superfamily II helicas 99.8 4E-17 1E-21 121.9 19.0 312 2-426 216-552 (830)
64 pfam00270 DEAD DEAD/DEAH box h 99.8 6.5E-18 1.7E-22 126.8 14.5 160 4-167 1-165 (167)
65 cd00079 HELICc Helicase superf 99.8 2.4E-19 6.1E-24 135.4 6.9 112 303-421 8-131 (131)
66 KOG0350 consensus 99.8 1.2E-16 3E-21 119.1 19.6 352 2-440 159-551 (620)
67 KOG0333 consensus 99.7 3.5E-16 9E-21 116.3 17.8 332 4-427 269-624 (673)
68 TIGR03158 cas3_cyano CRISPR-as 99.7 1.3E-15 3.2E-20 112.9 18.5 153 6-163 1-193 (357)
69 KOG0338 consensus 99.7 1.9E-15 4.8E-20 111.8 18.5 279 22-413 223-524 (691)
70 KOG0328 consensus 99.7 1.9E-15 4.9E-20 111.8 16.1 314 6-438 53-382 (400)
71 KOG0343 consensus 99.7 1E-14 2.6E-19 107.4 19.4 320 5-440 94-434 (758)
72 KOG0340 consensus 99.7 8.1E-14 2.1E-18 101.9 21.1 304 4-415 31-354 (442)
73 KOG0347 consensus 99.6 9.8E-14 2.5E-18 101.5 19.6 337 19-449 221-613 (731)
74 COG4581 Superfamily II RNA hel 99.6 4.6E-14 1.2E-18 103.4 17.8 152 2-164 119-272 (1041)
75 KOG0335 consensus 99.6 6.5E-14 1.7E-18 102.5 17.9 309 2-420 96-439 (482)
76 KOG0342 consensus 99.6 1.7E-13 4.4E-18 99.9 19.2 310 3-426 105-436 (543)
77 KOG0351 consensus 99.6 5E-14 1.3E-18 103.2 15.0 298 2-422 264-589 (941)
78 COG1203 CRISPR-associated heli 99.6 1.2E-12 3.1E-17 94.9 21.2 157 3-161 196-380 (733)
79 KOG0345 consensus 99.6 2.3E-12 5.8E-17 93.2 22.1 301 2-413 28-355 (567)
80 KOG0951 consensus 99.6 7.1E-13 1.8E-17 96.2 18.7 337 17-407 325-687 (1674)
81 KOG0348 consensus 99.6 2.1E-12 5.2E-17 93.4 20.6 373 6-440 163-565 (708)
82 KOG0344 consensus 99.6 4.5E-14 1.1E-18 103.5 11.7 300 5-416 161-486 (593)
83 cd00268 DEADc DEAD-box helicas 99.6 5.3E-13 1.4E-17 97.0 16.0 163 2-168 21-190 (203)
84 KOG0336 consensus 99.6 8.7E-12 2.2E-16 89.7 21.9 110 309-427 452-572 (629)
85 COG4098 comFA Superfamily II D 99.5 5.1E-11 1.3E-15 85.0 24.8 323 2-456 97-440 (441)
86 TIGR00348 hsdR type I site-spe 99.5 1.5E-13 3.7E-18 100.4 11.2 161 6-168 301-504 (813)
87 PRK05580 primosome assembly pr 99.5 8.1E-11 2.1E-15 83.8 24.4 152 2-163 168-330 (699)
88 COG0610 Type I site-specific r 99.5 7.9E-13 2E-17 96.0 14.1 139 18-165 274-417 (962)
89 KOG1513 consensus 99.5 7.5E-13 1.9E-17 96.1 13.0 81 354-441 850-937 (1300)
90 KOG0947 consensus 99.5 7E-12 1.8E-16 90.2 17.3 150 2-165 297-447 (1248)
91 KOG0341 consensus 99.5 7.8E-13 2E-17 96.0 11.0 118 307-434 408-535 (610)
92 KOG0326 consensus 99.5 8.3E-13 2.1E-17 95.8 10.9 313 5-440 110-440 (459)
93 KOG4284 consensus 99.5 2E-11 5.2E-16 87.4 17.3 152 7-160 52-208 (980)
94 KOG0339 consensus 99.4 6.2E-11 1.6E-15 84.5 19.7 289 24-427 267-575 (731)
95 COG1110 Reverse gyrase [DNA re 99.4 5E-11 1.3E-15 85.1 18.2 125 3-129 83-215 (1187)
96 PRK08074 bifunctional ATP-depe 99.4 3.4E-10 8.7E-15 80.0 21.9 82 310-392 746-839 (932)
97 TIGR02621 cas3_GSU0051 CRISPR- 99.4 2.1E-11 5.4E-16 87.3 14.3 96 319-423 309-432 (975)
98 KOG0334 consensus 99.4 4.6E-10 1.2E-14 79.2 19.1 309 2-426 387-719 (997)
99 TIGR01054 rgy reverse gyrase; 99.3 2.7E-10 6.9E-15 80.6 17.1 123 7-129 89-221 (1843)
100 TIGR01587 cas3_core CRISPR-ass 99.3 7E-11 1.8E-15 84.2 14.0 114 309-427 255-395 (424)
101 COG1198 PriA Primosomal protei 99.3 3.5E-09 9E-14 73.9 22.4 152 2-164 198-362 (730)
102 TIGR00631 uvrb excinuclease AB 99.3 1.6E-10 4.1E-15 82.0 15.6 122 310-440 435-573 (667)
103 PRK05298 excinuclease ABC subu 99.3 9.4E-10 2.4E-14 77.3 18.5 86 319-406 444-544 (657)
104 pfam00271 Helicase_C Helicase 99.3 1E-11 2.6E-16 89.2 5.9 67 340-413 12-78 (78)
105 KOG0949 consensus 99.2 1.5E-08 3.8E-13 70.0 21.7 154 6-169 515-677 (1330)
106 PRK09401 reverse gyrase; Revie 99.2 7.6E-09 1.9E-13 71.8 19.9 129 2-132 78-215 (1176)
107 KOG0332 consensus 99.2 1E-09 2.5E-14 77.2 14.7 308 1-425 95-441 (477)
108 KOG0327 consensus 99.2 9.1E-10 2.3E-14 77.4 14.4 311 7-438 53-379 (397)
109 KOG0948 consensus 99.2 8.7E-10 2.2E-14 77.5 14.1 146 2-165 129-279 (1041)
110 KOG0352 consensus 99.2 5.5E-09 1.4E-13 72.7 17.8 309 5-423 23-360 (641)
111 PRK07246 bifunctional ATP-depe 99.2 1.6E-08 4.1E-13 69.8 19.5 87 318-406 645-769 (820)
112 smart00490 HELICc helicase sup 99.2 3.6E-11 9.2E-16 85.9 5.7 66 341-413 17-82 (82)
113 COG1199 DinG Rad3-related DNA 99.2 9.4E-08 2.4E-12 65.2 22.6 65 2-66 15-83 (654)
114 TIGR01407 dinG_rel DnaQ family 99.1 3.8E-08 9.7E-13 67.6 19.9 136 312-453 757-942 (944)
115 COG0556 UvrB Helicase subunit 99.1 1.3E-08 3.4E-13 70.4 17.5 122 311-440 435-572 (663)
116 KOG0346 consensus 99.1 6.5E-08 1.6E-12 66.2 19.8 151 7-161 46-211 (569)
117 KOG0950 consensus 99.1 2.2E-08 5.7E-13 69.0 16.9 158 2-165 223-390 (1008)
118 PRK11664 ATP-dependent RNA hel 99.1 1.8E-08 4.5E-13 69.6 15.4 154 9-176 12-174 (812)
119 KOG0353 consensus 99.1 2.6E-08 6.6E-13 68.6 16.1 159 2-170 94-269 (695)
120 PRK11131 ATP-dependent RNA hel 99.0 1.3E-07 3.3E-12 64.3 17.5 153 6-171 78-238 (1295)
121 pfam07652 Flavi_DEAD Flaviviru 99.0 5.5E-09 1.4E-13 72.7 9.9 127 21-161 6-134 (146)
122 PRK12906 secA preprotein trans 98.9 4.3E-06 1.1E-10 55.2 22.0 124 1-129 77-212 (823)
123 KOG0337 consensus 98.9 1.4E-07 3.5E-12 64.2 13.2 138 20-160 60-204 (529)
124 PRK09200 preprotein translocas 98.8 7.6E-06 1.9E-10 53.7 20.2 150 1-174 75-241 (799)
125 PRK13104 secA preprotein trans 98.8 1.3E-05 3.3E-10 52.3 22.3 123 1-129 79-214 (896)
126 PRK13103 secA preprotein trans 98.8 1.3E-05 3.2E-10 52.3 20.4 124 1-129 79-214 (913)
127 PRK12904 preprotein translocas 98.7 1.3E-05 3.3E-10 52.3 20.2 124 1-129 78-213 (833)
128 KOG1802 consensus 98.7 1.6E-07 4.2E-12 63.8 10.5 67 2-68 410-476 (935)
129 smart00489 DEXDc3 DEAD-like he 98.7 8.5E-07 2.2E-11 59.4 13.0 37 2-38 8-48 (289)
130 smart00488 DEXDc2 DEAD-like he 98.7 8.5E-07 2.2E-11 59.4 13.0 37 2-38 8-48 (289)
131 PRK12903 secA preprotein trans 98.7 2.4E-05 6.1E-10 50.6 23.5 124 1-129 75-210 (885)
132 KOG0953 consensus 98.6 1.1E-06 2.8E-11 58.7 12.5 84 320-406 357-460 (700)
133 PRK12898 secA preprotein trans 98.6 3.2E-05 8.2E-10 49.9 23.2 124 1-129 115-269 (673)
134 PRK13107 preprotein translocas 98.6 5E-05 1.3E-09 48.7 23.0 124 1-129 79-214 (908)
135 PRK11747 dinG ATP-dependent DN 98.6 2.7E-06 6.9E-11 56.4 12.8 65 2-66 25-97 (697)
136 pfam02562 PhoH PhoH-like prote 98.5 2E-06 5.2E-11 57.1 11.6 133 4-165 6-159 (205)
137 COG1643 HrpA HrpA-like helicas 98.5 2.8E-06 7E-11 56.3 11.8 154 10-174 58-218 (845)
138 PRK12326 preprotein translocas 98.5 6.8E-05 1.7E-09 47.9 23.0 124 1-129 86-221 (775)
139 CHL00122 secA preprotein trans 98.5 8.5E-05 2.2E-09 47.3 21.7 124 1-129 73-208 (891)
140 PRK10875 recD exonuclease V su 98.4 2.2E-06 5.5E-11 57.0 8.8 138 5-163 150-298 (607)
141 KOG1803 consensus 98.4 2.4E-06 6.1E-11 56.7 8.8 58 3-61 186-244 (649)
142 KOG0349 consensus 98.4 2.3E-06 5.9E-11 56.8 8.7 94 317-414 501-607 (725)
143 PRK12900 secA preprotein trans 98.4 0.00017 4.4E-09 45.4 21.6 123 2-129 92-226 (983)
144 PRK09694 hypothetical protein; 98.4 5.8E-06 1.5E-10 54.4 10.1 152 4-161 290-482 (878)
145 TIGR01447 recD exodeoxyribonuc 98.4 4.5E-06 1.2E-10 55.0 9.3 145 4-161 229-393 (753)
146 COG3587 Restriction endonuclea 98.4 4.5E-06 1.1E-10 55.1 9.3 135 19-160 76-241 (985)
147 PRK10536 hypothetical protein; 98.3 9.8E-06 2.5E-10 53.0 9.9 142 5-165 62-216 (262)
148 KOG0329 consensus 98.3 2.3E-05 6E-10 50.7 11.4 134 25-160 87-226 (387)
149 KOG0951 consensus 98.2 8.3E-05 2.1E-09 47.3 13.8 105 17-131 1159-1267(1674)
150 KOG0922 consensus 98.2 6.2E-06 1.6E-10 54.2 7.2 158 10-183 59-228 (674)
151 COG0653 SecA Preprotein transl 98.2 0.00024 6.1E-09 44.6 15.2 143 2-172 78-236 (822)
152 pfam09848 DUF2075 Uncharacteri 98.1 1.6E-05 4E-10 51.8 8.0 90 20-132 4-94 (348)
153 TIGR03117 cas_csf4 CRISPR-asso 98.0 0.00023 5.9E-09 44.7 12.3 84 310-394 460-563 (636)
154 TIGR00595 priA primosomal prot 98.0 0.0001 2.6E-09 46.8 10.1 138 21-166 1-146 (524)
155 PRK12899 secA preprotein trans 97.9 0.0014 3.5E-08 40.0 23.1 123 2-129 92-227 (969)
156 pfam02399 Herpes_ori_bp Origin 97.9 0.00012 3E-09 46.5 8.9 133 20-161 52-190 (829)
157 KOG1805 consensus 97.7 0.00045 1.2E-08 42.9 9.9 122 2-129 669-808 (1100)
158 PRK12901 secA preprotein trans 97.7 0.0032 8.2E-08 37.8 22.5 123 2-129 169-304 (1111)
159 PRK10919 ATP-dependent DNA hel 97.7 7.4E-05 1.9E-09 47.7 5.3 54 1-56 1-57 (672)
160 TIGR00963 secA preprotein tran 97.7 0.0019 5E-08 39.1 12.4 124 1-129 57-192 (904)
161 pfam05621 TniB Bacterial TniB 97.7 0.0012 3.2E-08 40.2 11.4 121 18-161 62-189 (302)
162 TIGR03015 pepcterm_ATPase puta 97.7 0.0005 1.3E-08 42.6 9.3 31 11-41 35-67 (269)
163 COG0553 HepA Superfamily II DN 97.7 0.00012 3.1E-09 46.4 6.1 174 2-178 84-284 (866)
164 KOG0920 consensus 97.6 0.001 2.6E-08 40.8 10.5 148 4-162 175-330 (924)
165 TIGR01967 DEAH_box_HrpA ATP-de 97.6 9.6E-05 2.5E-09 47.0 5.2 105 309-427 281-423 (1320)
166 PRK12902 secA preprotein trans 97.6 0.0017 4.3E-08 39.4 11.5 124 1-129 82-217 (946)
167 TIGR01448 recD_rel helicase, R 97.6 0.00034 8.8E-09 43.6 7.9 130 1-160 349-490 (769)
168 PRK12402 replication factor C 97.6 0.00015 3.8E-09 45.8 6.0 26 18-43 37-62 (337)
169 PRK05707 DNA polymerase III su 97.6 0.00055 1.4E-08 42.4 8.8 110 1-129 2-118 (328)
170 KOG0924 consensus 97.6 0.00049 1.2E-08 42.7 8.1 143 12-171 366-520 (1042)
171 KOG0989 consensus 97.6 0.00023 5.9E-09 44.7 6.4 38 6-43 40-83 (346)
172 pfam05876 Terminase_GpA Phage 97.6 0.0011 2.9E-08 40.5 9.8 158 2-165 16-183 (552)
173 PRK00440 rfc replication facto 97.5 0.0027 7E-08 38.2 11.4 25 18-42 38-62 (318)
174 PRK05563 DNA polymerase III su 97.5 0.0012 3E-08 40.4 9.2 113 20-161 41-157 (541)
175 pfam07517 SecA_DEAD SecA DEAD- 97.5 0.0014 3.6E-08 39.9 9.4 122 1-129 74-209 (381)
176 PRK05896 DNA polymerase III su 97.4 0.0026 6.7E-08 38.3 10.2 107 20-156 41-152 (613)
177 PRK08769 DNA polymerase III su 97.4 0.0014 3.5E-08 40.0 8.3 136 2-160 4-151 (319)
178 PRK08451 DNA polymerase III su 97.3 0.0038 9.7E-08 37.3 9.5 120 7-155 19-149 (523)
179 PRK07940 DNA polymerase III su 97.3 0.0038 9.7E-08 37.3 9.5 112 20-160 42-158 (395)
180 PRK09112 DNA polymerase III su 97.3 0.0045 1.1E-07 36.9 9.8 111 7-129 28-153 (352)
181 PRK06674 DNA polymerase III su 97.3 0.0045 1.1E-07 36.9 9.7 112 20-160 41-156 (563)
182 PRK13889 conjugal transfer rel 97.3 0.0096 2.5E-07 34.9 11.4 131 2-168 346-477 (992)
183 PRK06305 DNA polymerase III su 97.2 0.0049 1.2E-07 36.6 9.8 113 20-160 42-158 (462)
184 PRK04195 replication factor C 97.2 0.00097 2.5E-08 40.9 6.2 41 117-160 99-139 (403)
185 KOG0923 consensus 97.2 0.00087 2.2E-08 41.2 5.9 163 3-183 266-443 (902)
186 KOG1132 consensus 97.2 0.0078 2E-07 35.4 10.7 34 2-35 21-58 (945)
187 PRK12377 putative replication 97.2 0.0057 1.4E-07 36.3 9.9 54 5-59 81-142 (248)
188 pfam01695 IstB IstB-like ATP b 97.2 0.0013 3.2E-08 40.2 6.5 52 7-59 37-88 (178)
189 PRK07270 DNA polymerase III su 97.2 0.0051 1.3E-07 36.5 9.3 126 7-161 20-158 (557)
190 pfam11496 HDA2-3 Class II hist 97.1 0.012 3.2E-07 34.2 11.1 180 244-435 7-234 (278)
191 KOG0952 consensus 97.1 0.00075 1.9E-08 41.6 4.6 26 391-416 1037-1062(1230)
192 PRK09183 transposase/IS protei 97.1 0.0074 1.9E-07 35.5 9.6 49 10-59 94-142 (258)
193 PRK06526 transposase; Provisio 97.1 0.0066 1.7E-07 35.9 9.3 49 10-59 91-139 (254)
194 PRK06647 DNA polymerase III su 97.1 0.0083 2.1E-07 35.2 9.8 125 7-160 21-156 (560)
195 KOG0926 consensus 97.1 0.00096 2.4E-08 40.9 4.9 142 10-161 264-424 (1172)
196 cd00009 AAA The AAA+ (ATPases 97.1 0.0023 5.9E-08 38.6 6.9 48 17-66 19-66 (151)
197 pfam03796 DnaB_C DnaB-like hel 97.1 0.0078 2E-07 35.4 9.5 112 20-133 22-145 (186)
198 PRK08058 DNA polymerase III su 97.1 0.0089 2.3E-07 35.1 9.7 128 5-160 9-148 (329)
199 PRK06645 DNA polymerase III su 97.0 0.0068 1.7E-07 35.8 8.9 112 20-160 46-165 (507)
200 COG1484 DnaC DNA replication p 97.0 0.013 3.3E-07 34.1 9.9 50 13-64 101-150 (254)
201 PRK07764 DNA polymerase III su 96.9 0.013 3.3E-07 34.0 9.5 114 20-160 40-157 (775)
202 PRK06995 flhF flagellar biosyn 96.9 0.027 6.9E-07 32.1 11.0 16 351-366 302-317 (404)
203 PRK13826 Dtr system oriT relax 96.9 0.02 5.1E-07 32.9 10.4 131 2-168 381-512 (1102)
204 PRK08181 transposase; Validate 96.9 0.012 3.2E-07 34.2 9.1 47 12-59 101-147 (269)
205 pfam00580 UvrD-helicase UvrD/R 96.8 0.0089 2.3E-07 35.1 7.9 54 3-58 1-57 (494)
206 PRK08116 hypothetical protein; 96.8 0.019 4.9E-07 33.0 9.5 45 19-65 110-154 (262)
207 PRK07993 DNA polymerase III su 96.8 0.013 3.4E-07 34.0 8.6 135 1-161 1-148 (334)
208 PRK06871 DNA polymerase III su 96.8 0.014 3.7E-07 33.8 8.7 108 2-129 1-118 (324)
209 PRK07133 DNA polymerase III su 96.8 0.012 3.2E-07 34.2 8.3 123 7-161 23-156 (718)
210 COG3421 Uncharacterized protei 96.7 0.0032 8.1E-08 37.8 5.2 37 23-59 3-40 (812)
211 PRK07471 DNA polymerase III su 96.7 0.012 3.1E-07 34.2 8.1 111 7-129 22-151 (363)
212 KOG0738 consensus 96.7 0.0092 2.4E-07 35.0 7.3 10 60-69 67-76 (491)
213 PRK06090 DNA polymerase III su 96.7 0.022 5.7E-07 32.6 9.1 109 1-129 2-120 (319)
214 TIGR02928 TIGR02928 orc1/cdc6 96.6 0.037 9.5E-07 31.3 9.8 126 4-146 22-167 (383)
215 smart00382 AAA ATPases associa 96.6 0.0069 1.8E-07 35.7 6.0 40 18-58 3-42 (148)
216 PRK07003 DNA polymerase III su 96.5 0.037 9.3E-07 31.3 9.5 112 20-160 41-156 (816)
217 TIGR00604 rad3 DNA repair heli 96.5 0.013 3.4E-07 34.0 7.3 134 311-457 598-803 (813)
218 pfam12340 DUF3638 Protein of u 96.5 0.012 3E-07 34.4 6.9 78 1-78 22-102 (229)
219 TIGR01970 DEAH_box_HrpB ATP-de 96.5 0.011 2.8E-07 34.5 6.6 147 13-172 13-170 (858)
220 KOG0740 consensus 96.5 0.007 1.8E-07 35.7 5.5 47 18-69 187-233 (428)
221 PRK08691 DNA polymerase III su 96.4 0.047 1.2E-06 30.7 9.5 112 20-160 41-156 (704)
222 PRK08853 DNA polymerase III su 96.4 0.032 8.3E-07 31.7 8.6 113 20-161 41-157 (717)
223 TIGR01074 rep ATP-dependent DN 96.4 0.0084 2.2E-07 35.2 5.5 41 1-43 2-42 (677)
224 TIGR02397 dnaX_nterm DNA polym 96.4 0.037 9.4E-07 31.3 8.8 125 7-161 19-154 (363)
225 PRK05564 DNA polymerase III su 96.3 0.039 1E-06 31.2 8.6 36 7-42 9-51 (313)
226 pfam05707 Zot Zonular occluden 96.2 0.027 6.8E-07 32.2 7.1 43 119-161 72-116 (183)
227 PRK05703 flhF flagellar biosyn 96.2 0.082 2.1E-06 29.2 10.6 25 428-454 383-407 (412)
228 PRK07994 DNA polymerase III su 96.2 0.076 1.9E-06 29.4 9.4 109 20-160 41-156 (643)
229 KOG0925 consensus 96.1 0.01 2.6E-07 34.7 4.7 51 116-170 158-210 (699)
230 pfam05970 DUF889 PIF1 helicase 96.1 0.031 8E-07 31.8 7.2 46 25-71 2-49 (418)
231 PRK00411 cdc6 cell division co 96.1 0.053 1.3E-06 30.4 8.3 42 4-45 35-83 (394)
232 PRK06835 DNA replication prote 96.1 0.014 3.5E-07 34.0 5.2 18 321-339 211-228 (330)
233 pfam04466 Terminase_3 Phage te 96.1 0.093 2.4E-06 28.9 9.7 131 18-163 3-140 (387)
234 KOG0742 consensus 96.0 0.091 2.3E-06 28.9 9.3 23 337-360 456-480 (630)
235 PRK07276 DNA polymerase III su 96.0 0.082 2.1E-06 29.2 8.9 132 1-161 1-144 (290)
236 CHL00181 cbbX CbbX; Provisiona 96.0 0.1 2.6E-06 28.6 9.3 104 19-162 61-171 (287)
237 COG1702 PhoH Phosphate starvat 96.0 0.0077 2E-07 35.5 3.6 13 22-34 29-41 (348)
238 COG1435 Tdk Thymidine kinase [ 96.0 0.039 1E-06 31.1 7.2 111 21-160 8-118 (201)
239 PRK10865 protein disaggregatio 96.0 0.045 1.1E-06 30.8 7.5 26 18-43 200-225 (857)
240 TIGR02639 ClpA ATP-dependent C 96.0 0.11 2.7E-06 28.6 14.0 83 18-134 230-319 (774)
241 PRK12323 DNA polymerase III su 95.9 0.11 2.8E-06 28.5 9.0 115 20-160 41-161 (721)
242 PRK06964 DNA polymerase III su 95.9 0.12 3E-06 28.3 9.4 40 3-42 2-46 (342)
243 KOG0737 consensus 95.8 0.046 1.2E-06 30.8 7.0 47 18-69 128-174 (386)
244 PRK04296 thymidine kinase; Pro 95.8 0.056 1.4E-06 30.2 7.5 34 21-55 6-39 (197)
245 KOG0739 consensus 95.8 0.068 1.7E-06 29.7 7.8 103 19-162 168-278 (439)
246 PRK08699 DNA polymerase III su 95.8 0.1 2.6E-06 28.7 8.6 112 3-129 2-125 (325)
247 PRK03992 proteasome-activating 95.7 0.036 9.2E-07 31.4 6.0 40 19-63 168-207 (390)
248 TIGR03346 chaperone_ClpB ATP-d 95.7 0.058 1.5E-06 30.1 7.0 25 18-42 195-219 (852)
249 PRK07952 DNA replication prote 95.6 0.062 1.6E-06 29.9 7.1 40 19-59 98-137 (242)
250 COG0470 HolB ATPase involved i 95.6 0.079 2E-06 29.3 7.6 42 2-43 2-50 (325)
251 pfam00004 AAA ATPase family as 95.6 0.042 1.1E-06 31.0 6.2 35 20-58 1-35 (131)
252 PRK05648 DNA polymerase III su 95.6 0.14 3.5E-06 27.8 8.8 112 20-160 41-156 (705)
253 PRK11773 uvrD DNA-dependent he 95.6 0.022 5.5E-07 32.7 4.5 50 2-53 9-61 (722)
254 PRK06872 DNA polymerase III su 95.6 0.15 3.8E-06 27.6 9.4 111 20-160 41-156 (696)
255 COG1474 CDC6 Cdc6-related prot 95.5 0.06 1.5E-06 30.0 6.7 45 4-48 22-73 (366)
256 PRK07399 DNA polymerase III su 95.5 0.16 4.1E-06 27.5 10.3 38 7-44 9-53 (314)
257 cd01124 KaiC KaiC is a circadi 95.5 0.16 4.1E-06 27.4 9.2 39 20-59 2-44 (187)
258 PRK06921 hypothetical protein; 95.4 0.068 1.7E-06 29.7 6.6 25 20-44 119-143 (265)
259 PRK08939 primosomal protein Dn 95.4 0.026 6.5E-07 32.3 4.4 45 323-374 186-230 (306)
260 PRK11747 dinG ATP-dependent DN 95.4 0.093 2.4E-06 28.9 7.2 79 311-393 526-617 (697)
261 smart00492 HELICc3 helicase su 95.4 0.03 7.6E-07 31.9 4.6 54 340-394 26-81 (141)
262 PRK13342 recombination factor 95.2 0.2 5E-06 26.9 10.3 29 12-40 29-60 (417)
263 pfam03237 Terminase_6 Terminas 95.2 0.11 2.9E-06 28.3 7.2 133 23-165 3-138 (380)
264 TIGR03345 VI_ClpV1 type VI sec 95.2 0.071 1.8E-06 29.6 6.1 25 18-42 209-233 (852)
265 PRK08770 DNA polymerase III su 95.2 0.2 5.2E-06 26.8 9.6 111 20-160 41-156 (663)
266 COG2804 PulE Type II secretory 95.1 0.073 1.9E-06 29.5 6.1 15 412-426 433-447 (500)
267 PRK09111 DNA polymerase III su 95.1 0.21 5.4E-06 26.7 9.3 113 20-160 48-168 (600)
268 pfam00265 TK Thymidine kinase. 95.0 0.069 1.7E-06 29.7 5.6 35 21-56 5-39 (175)
269 pfam00448 SRP54 SRP54-type pro 95.0 0.23 5.8E-06 26.5 11.0 127 20-166 4-130 (196)
270 cd00984 DnaB_C DnaB helicase C 95.0 0.23 5.9E-06 26.5 11.3 36 20-55 16-51 (242)
271 PRK11054 helD DNA helicase IV; 95.0 0.046 1.2E-06 30.8 4.6 52 3-56 197-251 (684)
272 COG0210 UvrD Superfamily I DNA 94.9 0.078 2E-06 29.4 5.7 54 1-56 1-57 (655)
273 KOG0991 consensus 94.9 0.061 1.6E-06 30.0 5.1 25 17-41 48-72 (333)
274 CHL00095 clpC Clp protease ATP 94.9 0.2 5.1E-06 26.9 7.7 24 18-41 201-224 (823)
275 PRK13341 recombination factor 94.9 0.16 4E-06 27.5 7.1 22 18-39 53-74 (726)
276 pfam02702 KdpD Osmosensitive K 94.9 0.25 6.4E-06 26.3 9.3 104 19-149 7-114 (211)
277 TIGR00382 clpX ATP-dependent C 94.8 0.024 6.1E-07 32.4 2.9 28 15-42 150-177 (452)
278 TIGR00604 rad3 DNA repair heli 94.8 0.014 3.7E-07 33.8 1.7 28 5-32 18-54 (813)
279 PRK04132 replication factor C 94.8 0.038 9.8E-07 31.2 3.8 36 7-42 30-71 (863)
280 pfam06745 KaiC KaiC. This fami 94.8 0.16 4E-06 27.5 6.9 45 9-54 6-56 (231)
281 pfam03354 Terminase_1 Phage Te 94.8 0.19 4.8E-06 27.0 7.3 51 5-55 1-63 (473)
282 TIGR01241 FtsH_fam ATP-depende 94.7 0.018 4.6E-07 33.2 2.0 31 8-38 72-113 (505)
283 COG0464 SpoVK ATPases of the A 94.7 0.094 2.4E-06 28.9 5.7 23 18-40 19-41 (494)
284 PRK05917 DNA polymerase III su 94.6 0.29 7.3E-06 25.9 8.7 25 20-44 22-46 (290)
285 cd03115 SRP The signal recogni 94.6 0.29 7.4E-06 25.9 11.0 34 20-54 3-36 (173)
286 PRK04328 hypothetical protein; 94.5 0.18 4.5E-06 27.2 6.8 44 9-53 11-59 (250)
287 COG3267 ExeA Type II secretory 94.5 0.16 4E-06 27.5 6.5 53 13-67 45-104 (269)
288 pfam06733 DEAD_2 DEAD_2. This 94.5 0.025 6.4E-07 32.3 2.3 38 92-129 112-151 (168)
289 KOG1807 consensus 94.5 0.14 3.6E-06 27.8 6.1 65 3-67 379-448 (1025)
290 TIGR03117 cas_csf4 CRISPR-asso 94.5 0.23 5.9E-06 26.5 7.2 50 15-64 13-64 (636)
291 TIGR02538 type_IV_pilB type IV 94.5 0.044 1.1E-06 30.8 3.5 33 250-285 311-343 (577)
292 TIGR00064 ftsY signal recognit 94.4 0.22 5.5E-06 26.7 6.9 127 18-166 82-219 (284)
293 PRK11034 clpA ATP-dependent Cl 94.3 0.24 6E-06 26.4 7.0 25 18-42 208-232 (758)
294 TIGR00678 holB DNA polymerase 94.2 0.28 7.1E-06 26.0 7.1 128 19-161 16-159 (216)
295 pfam01580 FtsK_SpoIIIE FtsK/Sp 94.1 0.18 4.7E-06 27.1 6.0 42 16-57 37-81 (202)
296 PRK09694 hypothetical protein; 94.0 0.29 7.4E-06 25.9 7.0 101 313-418 552-676 (878)
297 COG2256 MGS1 ATPase related to 93.8 0.39 9.9E-06 25.1 7.3 22 18-39 49-70 (436)
298 cd01122 GP4d_helicase GP4d_hel 93.7 0.45 1.1E-05 24.8 11.7 50 3-54 14-67 (271)
299 TIGR02768 TraA_Ti Ti-type conj 93.5 0.47 1.2E-05 24.6 10.7 130 3-168 415-545 (888)
300 TIGR00345 arsA arsenite-activa 93.4 0.15 3.7E-06 27.7 4.5 41 27-67 7-50 (330)
301 KOG1131 consensus 93.4 0.34 8.7E-06 25.5 6.4 54 3-56 17-76 (755)
302 pfam01935 DUF87 Domain of unkn 93.4 0.18 4.6E-06 27.1 5.0 46 12-58 19-64 (218)
303 PRK10436 hypothetical protein; 93.4 0.26 6.5E-06 26.2 5.7 14 45-58 46-59 (461)
304 PRK10490 sensor protein KdpD; 93.1 0.55 1.4E-05 24.2 9.3 107 19-149 26-133 (895)
305 CHL00176 ftsH cell division pr 93.1 0.1 2.6E-06 28.6 3.3 34 18-55 211-244 (631)
306 cd01129 PulE-GspE PulE/GspE Th 93.0 0.35 9E-06 25.4 6.0 50 2-52 63-114 (264)
307 cd01393 recA_like RecA is a b 93.0 0.39 9.9E-06 25.1 6.2 59 9-67 6-74 (226)
308 COG4626 Phage terminase-like p 92.9 0.58 1.5E-05 24.1 10.2 56 1-56 60-128 (546)
309 TIGR00631 uvrb excinuclease AB 92.9 0.068 1.7E-06 29.7 2.2 73 7-83 14-91 (667)
310 COG2812 DnaX DNA polymerase II 92.7 0.4 1E-05 25.1 6.0 112 20-160 41-156 (515)
311 TIGR03420 DnaA_homol_Hda DnaA 92.7 0.62 1.6E-05 23.9 9.2 93 20-162 41-133 (226)
312 PRK10263 DNA translocase FtsK; 92.6 0.42 1.1E-05 24.9 5.9 12 27-38 160-171 (1355)
313 pfam06068 TIP49 TIP49 C-termin 92.5 0.12 3.2E-06 28.1 3.2 24 18-41 51-74 (395)
314 KOG4150 consensus 92.4 0.68 1.7E-05 23.7 8.3 85 319-405 523-625 (1034)
315 TIGR00596 rad1 DNA repair prot 92.4 0.28 7.2E-06 26.0 4.9 81 363-449 542-626 (939)
316 PRK06321 replicative DNA helic 92.3 0.71 1.8E-05 23.5 10.9 41 379-422 413-455 (472)
317 TIGR01420 pilT_fam twitching m 92.1 0.37 9.3E-06 25.3 5.1 40 11-50 119-160 (350)
318 PRK08082 consensus 91.9 0.78 2E-05 23.3 10.6 42 379-422 388-431 (453)
319 PRK10733 hflB ATP-dependent me 91.8 0.2 5.2E-06 26.8 3.6 43 8-54 165-218 (644)
320 KOG0731 consensus 91.8 0.19 4.8E-06 27.1 3.3 22 18-39 345-366 (774)
321 PHA00350 putative assembly pro 91.8 0.28 7.1E-06 26.0 4.2 22 21-42 5-28 (402)
322 PRK07132 DNA polymerase III su 91.7 0.83 2.1E-05 23.1 10.7 23 20-42 23-45 (303)
323 PRK08760 replicative DNA helic 91.7 0.83 2.1E-05 23.1 10.5 42 379-422 413-457 (476)
324 TIGR02533 type_II_gspE general 91.6 0.53 1.4E-05 24.3 5.5 22 289-310 279-300 (495)
325 COG1224 TIP49 DNA helicase TIP 91.6 0.25 6.3E-06 26.3 3.8 23 19-41 67-89 (450)
326 PRK06731 flhF flagellar biosyn 91.6 0.86 2.2E-05 23.0 9.6 33 20-53 78-110 (270)
327 TIGR02782 TrbB_P P-type conjug 91.5 0.86 2.2E-05 23.0 6.5 34 7-40 128-162 (315)
328 TIGR03346 chaperone_ClpB ATP-d 91.4 0.32 8.3E-06 25.6 4.2 43 119-161 268-311 (852)
329 CHL00195 ycf46 Ycf46; Provisio 91.4 0.36 9.1E-06 25.3 4.4 44 354-397 351-398 (491)
330 TIGR03499 FlhF flagellar biosy 91.3 0.9 2.3E-05 22.9 8.3 48 357-404 220-270 (282)
331 COG0593 DnaA ATPase involved i 91.3 0.92 2.3E-05 22.9 9.6 103 19-162 115-220 (408)
332 COG3973 Superfamily I DNA and 91.3 0.59 1.5E-05 24.0 5.4 45 20-65 229-278 (747)
333 PRK05595 replicative DNA helic 91.2 0.93 2.4E-05 22.8 10.8 42 379-422 385-428 (444)
334 smart00491 HELICc2 helicase su 91.1 0.48 1.2E-05 24.6 4.9 55 340-394 23-82 (142)
335 COG3972 Superfamily I DNA and 90.8 1 2.6E-05 22.6 9.0 138 26-171 185-348 (660)
336 pfam05872 DUF853 Bacterial pro 90.8 0.33 8.3E-06 25.6 3.7 31 16-46 20-50 (504)
337 PRK13765 ATP-dependent proteas 90.7 0.58 1.5E-05 24.1 5.0 50 7-56 36-102 (637)
338 TIGR01242 26Sp45 26S proteasom 90.5 0.2 5.1E-06 26.9 2.5 20 19-38 158-177 (364)
339 TIGR02640 gas_vesic_GvpN gas v 90.5 0.46 1.2E-05 24.7 4.3 39 12-54 16-54 (265)
340 TIGR00635 ruvB Holliday juncti 90.4 0.24 6.2E-06 26.4 2.8 24 18-41 31-54 (305)
341 PRK08533 flagellar accessory p 90.4 1.1 2.8E-05 22.4 10.0 57 10-68 12-73 (230)
342 PRK10416 cell division protein 90.4 1.1 2.8E-05 22.3 10.4 18 351-368 367-384 (499)
343 pfam07015 VirC1 VirC1 protein. 90.1 1.2 3E-05 22.2 9.4 115 26-176 11-127 (231)
344 TIGR01243 CDC48 AAA family ATP 90.0 0.49 1.2E-05 24.5 4.1 23 18-40 241-263 (980)
345 PRK09302 circadian clock prote 89.9 1.2 3.1E-05 22.1 10.0 44 10-53 12-60 (501)
346 COG2205 KdpD Osmosensitive K+ 89.9 1.2 3.1E-05 22.1 8.3 35 19-53 24-58 (890)
347 PRK00652 lpxK tetraacyldisacch 89.7 1.3 3.2E-05 22.0 8.3 22 26-47 60-81 (334)
348 PRK10867 signal recognition pa 89.7 1.3 3.2E-05 22.0 8.9 34 20-53 103-136 (453)
349 PRK10037 cell division protein 89.6 1.3 3.3E-05 22.0 7.3 98 26-128 11-128 (250)
350 TIGR00376 TIGR00376 DNA helica 89.5 1.3 3.3E-05 21.9 8.0 80 3-85 203-284 (709)
351 COG1222 RPT1 ATP-dependent 26S 88.8 0.93 2.4E-05 22.8 4.8 46 320-368 242-297 (406)
352 COG0467 RAD55 RecA-superfamily 88.8 0.96 2.4E-05 22.8 4.9 35 19-54 25-59 (260)
353 COG0542 clpA ATP-binding subun 88.7 0.64 1.6E-05 23.8 3.9 25 18-42 192-216 (786)
354 COG1066 Sms Predicted ATP-depe 88.5 1.5 3.9E-05 21.5 9.9 116 20-160 96-218 (456)
355 PRK09270 frcK putative fructos 88.5 0.95 2.4E-05 22.8 4.7 39 17-55 32-72 (230)
356 TIGR00368 TIGR00368 Mg chelata 88.5 0.27 6.8E-06 26.1 1.9 16 19-34 215-230 (505)
357 cd01130 VirB11-like_ATPase Typ 88.4 1.6 4E-05 21.5 6.5 46 4-51 11-57 (186)
358 TIGR01073 pcrA ATP-dependent D 88.3 1.2 3.1E-05 22.2 5.1 118 2-127 4-148 (811)
359 pfam01637 Arch_ATPase Archaeal 88.2 1.6 4.1E-05 21.4 9.1 49 8-56 8-59 (223)
360 TIGR02902 spore_lonB ATP-depen 88.1 1.1 2.8E-05 22.4 4.8 28 7-34 70-103 (532)
361 COG1192 Soj ATPases involved i 88.1 0.71 1.8E-05 23.5 3.8 34 26-59 12-47 (259)
362 PRK05636 replicative DNA helic 88.1 1.6 4.2E-05 21.3 10.4 13 410-422 482-494 (507)
363 cd01120 RecA-like_NTPases RecA 88.0 1.6 4.2E-05 21.3 10.2 34 20-54 2-35 (165)
364 TIGR02788 VirB11 P-type DNA tr 88.0 0.67 1.7E-05 23.7 3.7 16 16-31 157-172 (328)
365 KOG1806 consensus 88.0 1.4 3.6E-05 21.8 5.3 63 2-64 738-801 (1320)
366 PRK08694 consensus 87.9 1.7 4.3E-05 21.3 11.1 42 379-422 404-447 (468)
367 PRK09361 radB DNA repair and r 87.9 1.1 2.7E-05 22.5 4.6 46 9-55 10-60 (224)
368 TIGR03453 partition_RepA plasm 87.9 0.69 1.8E-05 23.6 3.6 12 147-158 129-140 (387)
369 PRK13869 plasmid-partitioning 87.6 0.75 1.9E-05 23.4 3.7 16 146-161 145-160 (405)
370 KOG0734 consensus 87.5 0.7 1.8E-05 23.6 3.5 44 411-454 655-709 (752)
371 PTZ00293 thymidine kinase; Pro 87.5 1.8 4.5E-05 21.1 7.6 105 21-160 8-114 (284)
372 KOG0736 consensus 87.4 0.47 1.2E-05 24.7 2.6 10 154-163 433-442 (953)
373 TIGR02785 addA_Gpos recombinat 87.4 0.8 2E-05 23.2 3.7 51 5-57 4-59 (1295)
374 PRK10923 glnG nitrogen regulat 87.3 1.8 4.6E-05 21.1 5.5 11 73-83 74-84 (469)
375 PRK13705 plasmid-partitioning 87.2 0.85 2.2E-05 23.1 3.8 15 144-158 128-142 (388)
376 PRK13894 conjugal transfer ATP 87.1 1.9 4.8E-05 21.0 6.1 17 66-82 27-43 (320)
377 TIGR00347 bioD dethiobiotin sy 87.0 0.53 1.4E-05 24.3 2.7 25 23-47 4-28 (187)
378 TIGR03600 phage_DnaB phage rep 86.9 1.9 4.9E-05 20.9 9.8 12 379-391 378-389 (421)
379 cd01131 PilT Pilus retraction 86.8 1 2.6E-05 22.5 4.0 31 20-50 4-34 (198)
380 KOG2543 consensus 86.7 1.7 4.3E-05 21.2 5.1 145 4-165 11-162 (438)
381 COG1219 ClpX ATP-dependent pro 86.7 0.6 1.5E-05 24.0 2.8 24 18-41 98-121 (408)
382 cd01127 TrwB Bacterial conjuga 86.7 1.9 4.8E-05 21.0 5.3 40 17-57 42-81 (410)
383 COG0003 ArsA Predicted ATPase 86.6 0.96 2.5E-05 22.7 3.8 45 20-65 4-51 (322)
384 KOG1942 consensus 86.5 0.66 1.7E-05 23.7 2.9 45 18-68 65-109 (456)
385 COG0552 FtsY Signal recognitio 86.5 2 5.2E-05 20.8 8.8 15 117-131 221-235 (340)
386 PRK12422 chromosomal replicati 86.5 2 5.2E-05 20.8 10.0 12 119-130 204-215 (455)
387 PHA02519 plasmid partition pro 86.3 1 2.7E-05 22.5 3.9 14 145-158 129-142 (387)
388 cd02035 ArsA ArsA ATPase funct 86.3 1 2.5E-05 22.6 3.7 28 25-53 7-34 (217)
389 TIGR01075 uvrD DNA helicase II 86.1 0.4 1E-05 25.0 1.7 32 2-35 4-35 (741)
390 TIGR03371 cellulose_yhjQ cellu 86.0 1.1 2.8E-05 22.4 3.8 32 26-58 11-44 (246)
391 TIGR00959 ffh signal recogniti 85.9 0.97 2.5E-05 22.7 3.5 42 26-70 111-158 (439)
392 KOG0733 consensus 85.7 1.7 4.3E-05 21.3 4.7 24 18-41 223-247 (802)
393 PRK05342 clpX ATP-dependent pr 85.5 0.9 2.3E-05 22.9 3.2 25 17-41 109-133 (411)
394 pfam00308 Bac_DnaA Bacterial d 85.4 2.3 5.8E-05 20.5 12.0 101 20-160 37-138 (219)
395 pfam10412 TrwB_AAD_bind Type I 85.4 2.1 5.3E-05 20.7 5.0 41 16-57 14-54 (386)
396 KOG0741 consensus 85.4 0.77 2E-05 23.3 2.8 36 18-55 257-292 (744)
397 PRK13896 cobyrinic acid a,c-di 85.4 1.6 4E-05 21.5 4.4 29 18-46 2-31 (432)
398 PRK10365 transcriptional regul 85.3 1.5 3.9E-05 21.5 4.3 17 388-404 352-368 (441)
399 COG1444 Predicted P-loop ATPas 85.3 2.3 5.9E-05 20.4 9.4 50 6-55 218-270 (758)
400 pfam09455 Cas_DxTHG CRISPR-ass 85.3 1.4 3.5E-05 21.8 4.1 134 28-167 24-185 (387)
401 TIGR02903 spore_lon_C ATP-depe 85.2 1.4 3.5E-05 21.8 4.0 34 7-40 160-199 (616)
402 pfam09140 MipZ ATPase MipZ. Mi 85.1 1.3 3.3E-05 22.0 3.9 28 26-54 10-39 (261)
403 COG0714 MoxR-like ATPases [Gen 85.1 1.8 4.7E-05 21.0 4.6 29 13-41 39-67 (329)
404 PRK06904 replicative DNA helic 84.7 2.3 5.7E-05 20.5 4.9 42 379-422 408-452 (472)
405 cd00550 ArsA_ATPase Oxyanion-t 84.3 1.4 3.6E-05 21.8 3.7 44 20-64 2-48 (254)
406 PRK05748 replicative DNA helic 84.1 2.6 6.6E-05 20.1 5.0 42 379-422 389-432 (448)
407 PRK13230 nitrogenase reductase 84.0 1.5 3.8E-05 21.6 3.8 33 19-52 3-35 (292)
408 TIGR02173 cyt_kin_arch cytidyl 83.7 0.73 1.9E-05 23.5 2.1 24 21-44 4-27 (173)
409 PRK00313 lpxK tetraacyldisacch 83.7 2.7 7E-05 20.0 7.4 21 26-46 62-82 (332)
410 PRK11361 acetoacetate metaboli 83.6 2.7 7E-05 20.0 6.8 21 385-405 353-373 (457)
411 PRK08006 replicative DNA helic 83.6 2.7 7E-05 20.0 5.1 42 379-422 410-453 (471)
412 COG0444 DppD ABC-type dipeptid 83.5 2.8 7.1E-05 20.0 5.4 24 18-41 32-55 (316)
413 PRK08840 replicative DNA helic 83.5 2.8 7.1E-05 19.9 11.1 43 379-423 403-447 (464)
414 cd02028 UMPK_like Uridine mono 83.4 2.3 5.8E-05 20.5 4.5 33 20-53 2-34 (179)
415 cd01394 radB RadB. The archaea 83.2 2.5 6.4E-05 20.2 4.6 46 9-55 6-56 (218)
416 pfam02374 ArsA_ATPase Anion-tr 83.2 1.8 4.5E-05 21.2 3.9 45 19-64 2-49 (304)
417 TIGR03018 pepcterm_TyrKin exop 83.1 1.8 4.7E-05 21.0 3.9 33 21-53 39-72 (207)
418 pfam00142 Fer4_NifH 4Fe-4S iro 83.1 1.8 4.5E-05 21.2 3.8 26 26-52 9-34 (269)
419 cd02040 NifH NifH gene encodes 82.9 1.8 4.6E-05 21.1 3.8 30 22-52 6-35 (270)
420 PRK07004 replicative DNA helic 82.8 2.8 7.2E-05 19.9 4.8 42 379-422 398-441 (460)
421 COG0465 HflB ATP-dependent Zn 82.7 1.8 4.5E-05 21.1 3.7 10 152-161 287-296 (596)
422 COG4646 DNA methylase [Transcr 82.6 0.66 1.7E-05 23.7 1.5 15 154-168 227-241 (637)
423 PRK05642 DNA replication initi 82.6 3 7.7E-05 19.7 9.5 92 20-161 48-139 (234)
424 cd01125 repA Hexameric Replica 82.5 3 7.7E-05 19.7 8.5 22 20-41 4-25 (239)
425 PRK10246 exonuclease subunit S 82.4 0.23 5.9E-06 26.5 -0.9 37 3-39 11-54 (1047)
426 COG1074 RecB ATP-dependent exo 81.9 2.6 6.5E-05 20.2 4.3 41 17-57 16-60 (1139)
427 COG0378 HypB Ni2+-binding GTPa 81.8 2.5 6.4E-05 20.2 4.2 34 19-54 15-48 (202)
428 KOG0732 consensus 81.5 0.63 1.6E-05 23.8 1.1 50 17-68 298-350 (1080)
429 KOG2028 consensus 81.3 3.4 8.6E-05 19.4 4.9 17 18-34 163-179 (554)
430 pfam07724 AAA_2 AAA domain (Cd 81.2 2.1 5.5E-05 20.6 3.7 36 19-56 5-40 (168)
431 TIGR02982 heterocyst_DevA ABC 81.0 3.5 8.8E-05 19.4 5.5 18 317-334 188-205 (220)
432 PHA02518 ParA-like protein; Pr 80.9 3.5 8.8E-05 19.4 6.5 38 26-65 10-49 (211)
433 COG3640 CooC CO dehydrogenase 80.8 2.4 6E-05 20.4 3.8 33 21-53 4-36 (255)
434 PRK07263 consensus 80.8 3.5 8.9E-05 19.3 4.9 14 409-422 424-437 (453)
435 pfam07726 AAA_3 ATPase family 80.6 1.8 4.5E-05 21.2 3.1 23 19-41 1-23 (131)
436 COG5245 DYN1 Dynein, heavy cha 80.3 2.5 6.4E-05 20.2 3.8 56 12-67 1488-1573(3164)
437 COG4170 SapD ABC-type antimicr 80.2 3.7 9.4E-05 19.2 4.7 19 20-38 36-54 (330)
438 KOG0743 consensus 79.9 1 2.7E-05 22.5 1.7 15 312-326 277-291 (457)
439 cd02042 ParA ParA and ParB of 79.9 2.7 6.8E-05 20.1 3.8 26 26-52 9-34 (104)
440 cd01121 Sms Sms (bacterial rad 79.8 3.8 9.6E-05 19.1 11.0 90 20-133 85-174 (372)
441 pfam01443 Viral_helicase1 Vira 79.8 3.8 9.6E-05 19.1 6.7 37 119-164 61-97 (226)
442 COG1221 PspF Transcriptional r 79.7 3.8 9.7E-05 19.1 5.7 96 18-145 102-198 (403)
443 TIGR00609 recB exodeoxyribonuc 79.6 3.2 8.3E-05 19.5 4.2 39 17-55 9-58 (1324)
444 PRK00090 bioD dithiobiotin syn 79.6 2.9 7.4E-05 19.8 3.9 25 22-46 5-29 (223)
445 pfam06564 YhjQ YhjQ protein. T 79.4 2.5 6.4E-05 20.2 3.6 32 26-58 11-44 (244)
446 PRK13873 conjugal transfer ATP 79.4 3.9 9.9E-05 19.1 5.0 14 247-260 538-551 (815)
447 PRK00771 signal recognition pa 79.4 3.9 9.9E-05 19.1 7.9 33 20-53 100-132 (433)
448 pfam01656 CbiA CobQ/CobB/MinD/ 79.1 2.4 6E-05 20.4 3.3 26 26-52 8-33 (212)
449 PRK00149 dnaA chromosomal repl 78.8 4.1 0.0001 18.9 12.3 11 119-129 210-220 (447)
450 TIGR02211 LolD_lipo_ex lipopro 78.7 1.5 3.9E-05 21.5 2.3 21 320-340 191-211 (221)
451 pfam06414 Zeta_toxin Zeta toxi 78.7 3.3 8.4E-05 19.5 4.0 37 17-56 11-48 (191)
452 PTZ00301 uridine kinase; Provi 78.7 4.1 0.0001 18.9 4.8 35 20-54 6-41 (210)
453 COG4128 Zot Zonula occludens t 78.6 4.1 0.00011 18.9 4.6 11 119-129 83-93 (398)
454 KOG0243 consensus 78.5 1.1 2.8E-05 22.4 1.5 51 122-176 333-384 (1041)
455 PRK06067 flagellar accessory p 78.4 4.2 0.00011 18.9 10.8 58 9-68 19-81 (241)
456 COG0132 BioD Dethiobiotin synt 78.4 4.2 0.00011 18.9 4.8 29 18-46 3-32 (223)
457 cd02025 PanK Pantothenate kina 78.4 3.9 1E-04 19.1 4.3 34 20-53 2-36 (220)
458 cd03109 DTBS Dethiobiotin synt 78.3 3.1 7.9E-05 19.7 3.7 34 20-54 2-35 (134)
459 CHL00175 minD septum-site dete 78.1 3.3 8.3E-05 19.5 3.8 26 26-52 23-48 (279)
460 COG2255 RuvB Holliday junction 78.1 2.3 5.9E-05 20.4 3.0 23 19-41 54-76 (332)
461 cd02117 NifH_like This family 78.0 3 7.8E-05 19.7 3.6 31 21-52 4-34 (212)
462 KOG0730 consensus 77.7 4.4 0.00011 18.7 5.4 21 19-39 220-240 (693)
463 PRK01906 tetraacyldisaccharide 77.4 3.2 8.1E-05 19.6 3.6 21 27-47 68-88 (339)
464 pfam05496 RuvB_N Holliday junc 77.3 2.5 6.4E-05 20.2 3.1 23 19-41 52-74 (234)
465 COG0606 Predicted ATPase with 77.1 2.7 6.8E-05 20.1 3.1 35 128-165 177-211 (490)
466 KOG0921 consensus 77.0 4.6 0.00012 18.6 6.3 115 11-129 387-505 (1282)
467 TIGR02237 recomb_radB DNA repa 76.8 4.4 0.00011 18.7 4.2 30 22-52 17-46 (223)
468 PRK12374 putative dithiobiotin 76.5 4 0.0001 19.0 3.9 27 20-46 6-32 (231)
469 COG0541 Ffh Signal recognition 76.5 4.7 0.00012 18.6 4.9 33 20-53 103-135 (451)
470 cd02034 CooC The accessory pro 76.5 3.8 9.7E-05 19.1 3.8 36 21-57 3-40 (116)
471 KOG0729 consensus 76.5 2.1 5.4E-05 20.6 2.5 11 358-368 313-323 (435)
472 PRK11823 DNA repair protein Ra 76.4 4.8 0.00012 18.5 10.2 89 20-133 93-181 (454)
473 PRK00080 ruvB Holliday junctio 76.2 3.1 7.9E-05 19.7 3.3 23 19-41 53-75 (328)
474 PRK13909 putative recombinatio 76.0 4.9 0.00012 18.5 4.3 35 21-55 2-38 (911)
475 cd02036 MinD Bacterial cell di 75.9 3.6 9.1E-05 19.3 3.5 26 26-52 9-34 (179)
476 PRK13900 type IV secretion sys 75.8 4.6 0.00012 18.7 4.0 14 67-80 16-29 (332)
477 PRK13849 putative crown gall t 75.7 5 0.00013 18.4 8.2 115 26-176 11-127 (231)
478 PRK13891 conjugal transfer pro 75.5 5 0.00013 18.4 4.6 35 354-389 713-753 (852)
479 PRK00091 miaA tRNA delta(2)-is 75.4 2.6 6.7E-05 20.1 2.7 22 20-41 7-28 (304)
480 PRK08084 DNA replication initi 75.4 5.1 0.00013 18.4 8.7 92 20-160 48-139 (235)
481 cd01983 Fer4_NifH The Fer4_Nif 75.2 3.7 9.3E-05 19.2 3.4 25 27-51 9-33 (99)
482 PRK11608 pspF phage shock prot 75.0 5.2 0.00013 18.3 5.4 59 7-66 19-77 (325)
483 pfam07728 AAA_5 AAA domain (dy 74.7 3 7.6E-05 19.8 2.9 23 19-41 1-23 (139)
484 COG2894 MinD Septum formation 74.7 3.6 9.1E-05 19.3 3.2 95 27-124 13-120 (272)
485 PRK10787 DNA-binding ATP-depen 74.5 4.8 0.00012 18.5 3.9 38 7-44 336-376 (784)
486 PRK06827 phosphoribosylpyropho 74.5 5.4 0.00014 18.2 6.6 82 15-99 263-345 (381)
487 COG0324 MiaA tRNA delta(2)-iso 74.4 3 7.8E-05 19.7 2.9 22 20-41 6-27 (308)
488 cd02023 UMPK Uridine monophosp 74.4 5.4 0.00014 18.2 4.4 30 21-53 3-32 (198)
489 KOG1564 consensus 73.9 5.5 0.00014 18.1 6.9 120 22-148 107-242 (351)
490 PRK10876 recB exonuclease V su 73.9 5.5 0.00014 18.1 5.1 37 17-53 16-63 (1181)
491 PRK07773 replicative DNA helic 73.8 5.6 0.00014 18.1 11.0 137 20-158 206-360 (868)
492 PRK13764 ATPase; Provisional 73.6 5.2 0.00013 18.3 3.9 31 16-46 258-288 (605)
493 TIGR02759 TraD_Ftype type IV c 73.5 5.7 0.00014 18.1 4.0 33 19-51 210-242 (613)
494 COG1855 ATPase (PilT family) [ 73.5 5.3 0.00014 18.3 3.9 29 18-46 264-292 (604)
495 PRK08506 replicative DNA helic 73.4 5.7 0.00015 18.1 11.0 138 20-158 196-350 (473)
496 PTZ00112 origin recognition co 73.1 4.4 0.00011 18.8 3.4 27 18-44 293-320 (650)
497 cd01363 Motor_domain Myosin an 73.1 1.5 3.8E-05 21.6 1.0 26 11-36 16-43 (186)
498 KOG1133 consensus 73.0 5.8 0.00015 18.0 4.5 37 2-38 15-55 (821)
499 KOG0987 consensus 72.7 5.9 0.00015 18.0 6.1 124 2-146 117-245 (540)
500 cd00106 KISc Kinesin motor dom 72.7 1.9 4.8E-05 21.0 1.4 29 8-36 68-98 (328)
No 1
>KOG0385 consensus
Probab=100.00 E-value=0 Score=517.76 Aligned_cols=422 Identities=20% Similarity=0.322 Sum_probs=338.0
Q ss_pred CCCHHHHHHHHHHHH---CC-CEEEEECCCCCHHHHHHHHHHHHHH-CC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996---79-8099958899868999999999997-59-994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILD---HK-RCAIWASMGSGKTVSVLTALSYIHL-WG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~---~~-~~ll~~~~G~GKT~~al~~~~~l~~-~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|+|||.+|++|+.. ++ +|+|||+||+|||+|+|+++.++.. .+ .+|.||+||+|++. .|..||.+|+ |.+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~--P~l 243 (971)
T KOG0385 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFT--PSL 243 (971)
T ss_pred CCCHHHHCCHHHHHHHHHCCCCCEEEHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHH-HHHHHHHHHC--CCC
T ss_conf 5543320337999999865766584231045338999999999998517999849981276678-9999999768--986
Q ss_pred EEEEEECCHHHHHHHHC-----CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 59998589789888730-----7798699806420233442000113220440453100246543115677776654305
Q gi|255764515|r 76 NISVITGTVKQRTKVLK-----TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~-----~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
.+.++.|+...|..... +..+|+|+|||..-.. +..+...+|..+||||||++||. .|+..+.+... +
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d-k~~lk~~~W~ylvIDEaHRiKN~----~s~L~~~lr~f--~ 316 (971)
T KOG0385 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD-KSFLKKFNWRYLVIDEAHRIKNE----KSKLSKILREF--K 316 (971)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH-HHHHHCCCCEEEEECHHHHHCCH----HHHHHHHHHHH--C
T ss_conf 34988479999999999853157876686407889866-88986199349995236541462----44899999985--6
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002455554558999997424543320
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLD 230 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (458)
+.++++|||||+||++.|||++|+|+-|... .....| ..|+........ ......++..+.++.+++.
T Consensus 317 ~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF--~~~e~F-~swF~~~~~~~~---------~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385 317 TDNRLLLTGTPLQNNLHELWALLNFLLPDIF--NSAEDF-DSWFDFTNCEGD---------QELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCHHHC--CCHHHH-HHHHCCCCCCCC---------HHHHHHHHHHHHHHHHHHH
T ss_conf 6552675278543649999999976221420--578899-999711343355---------8999999986638999998
Q ss_pred CCCCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCC-------
Q ss_conf 00010-01001100034524536899888999999851033452-0223478888754203541000223430-------
Q gi|255764515|r 231 IADYQ-NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENI-EAFNSASKTVKCLQLANGAVYYDEEKHW------- 301 (458)
Q Consensus 231 ~~~~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~q~~~~~~~~~~~~~~------- 301 (458)
+.++. .+|++......+.|++-|.+-|..+...-+..+.+... .......-++.|++.|+||.+++.....
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttde 464 (971)
T KOG0385 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDE 464 (971)
T ss_pred HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 88787418975326786065088999999999611375426663203789999999997469964148888899988621
Q ss_pred -HHCCCCCCCCHHHHHHC--CCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCC--CCEEE
Q ss_conf -00134333325665412--488403422236788866410----------0026533445899876424588--55899
Q gi|255764515|r 302 -KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGK--IPLLF 366 (458)
Q Consensus 302 -~~~~~~k~~~l~~il~~--~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~--~~vli 366 (458)
....|+|+..|..++.. ..|.+|+||+++..+++.+.. ++-|..+.++|...|+.||.+. .-|++
T Consensus 465 hLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFl 544 (971)
T KOG0385 465 HLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFL 544 (971)
T ss_pred HHHHCCCCEEHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 78754761116998889998489769982698889999999987517526872388870789999986389976258999
Q ss_pred EEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 84422111622001785999908998986864456666202202037877528999985899689999999999999999
Q gi|255764515|r 367 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL 446 (458)
Q Consensus 367 ~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~ 446 (458)
+|++|||.||||+. +++||+||..|||....||.+|+ |||||+++|.||+||+++||||+|+++...|..+...
T Consensus 545 LSTRAGGLGINL~a-ADtVIlyDSDWNPQ~DLQAmDRa-----HRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~ 618 (971)
T KOG0385 545 LSTRAGGLGINLTA-ADTVILYDSDWNPQVDLQAMDRA-----HRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKL 618 (971)
T ss_pred EECCCCCCCCCCCC-CCEEEEECCCCCCHHHHHHHHHH-----HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCHHHH
T ss_conf 85046666302223-64799966899821437889988-----8607877159999753551899999999987441553
Q ss_pred HHHHH
Q ss_conf 98554
Q gi|255764515|r 447 LLNAL 451 (458)
Q Consensus 447 ~~~~~ 451 (458)
|++..
T Consensus 619 VIq~g 623 (971)
T KOG0385 619 VIQQG 623 (971)
T ss_pred HHCCC
T ss_conf 01377
No 2
>KOG0384 consensus
Probab=100.00 E-value=0 Score=514.16 Aligned_cols=419 Identities=20% Similarity=0.315 Sum_probs=338.1
Q ss_pred CCCCHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 987478999999999----679809995889986899999999999759--99499991604656999999998558888
Q gi|255764515|r 1 MNLAPHQTKIVDWIL----DHKRCAIWASMGSGKTVSVLTALSYIHLWG--EKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~----~~~~~ll~~~~G~GKT~~al~~~~~l~~~~--~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
.+||+||++|++||+ ++.+|+||||||||||+|+|+++..|...+ .+|.|||||-|.+. .|++||+.|+ .
T Consensus 369 ~~LRDYQLeGlNWLl~~W~k~~n~ILADEMGLGKTvQtI~FLs~l~~~~~~~GPfLvVvPLSTi~-~W~ref~~Wt---d 444 (1373)
T KOG0384 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT---D 444 (1373)
T ss_pred CCHHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCH-HHHHHHHHHH---H
T ss_conf 61446563132899998864686475400257740134599999998454478869998640007-8999999875---1
Q ss_pred CEEEEEECCHHHHHHHHC------C-----CCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 159998589789888730------7-----79869980642023344200011322044045310024654311567777
Q gi|255764515|r 75 MNISVITGTVKQRTKVLK------T-----PAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARA 143 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~------~-----~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~ 143 (458)
+++.+++|+...|.-+-. . ..++++||||.+-.+.. .+..++|.+++|||||++||. .|+++..
T Consensus 445 mN~ivY~G~~~SR~~I~qYE~~~~~~~~~~KFn~LlTTyE~vLkDk~-~L~~i~W~~~~vDEAHRLKN~----~s~Ly~~ 519 (1373)
T KOG0384 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA-ELSKIPWRYLLVDEAHRLKND----ESKLYES 519 (1373)
T ss_pred CCEEEEECCHHHHHHHHHHHEEECCCCCEEEEEEEEHHHHHHHCCHH-HHCCCCEEEEEECHHHHHCCC----HHHHHHH
T ss_conf 46588826656789998765045477751788764001898972688-864575278974166550650----4489999
Q ss_pred HHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66543059807996584023100101346775178887753277887773695640330000245555455899999742
Q gi|255764515|r 144 LAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLS 223 (458)
Q Consensus 144 l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (458)
+... +..+++++||||.||++.|||++++||+|+.. .+...|...+ ... .......+...|.
T Consensus 520 L~~f--~~~hrlLiTGTPLQNsi~EL~sLL~Fl~P~kF--~~~~ef~~e~-~~~-------------~e~~v~~Lq~~L~ 581 (1373)
T KOG0384 520 LNQF--KMNHRLLITGTPLQNSLKELWSLLHFLMPGKF--DSWDEFLEEF-DEE-------------TEEQVRKLQQILK 581 (1373)
T ss_pred HHHH--HHCCEEEEECCCCCCCHHHHHHHHHHHCCCCC--CCHHHHHHHH-CCH-------------HHHHHHHHHHHHH
T ss_conf 9986--43075775478540319999999877375557--8678998873-302-------------3889999999876
Q ss_pred HHHHHHHCCCCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCC-
Q ss_conf 454332000010-010011000345245368998889999998510334-52022347888875420354100022343-
Q gi|255764515|r 224 DCCLSLDIADYQ-NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGE-NIEAFNSASKTVKCLQLANGAVYYDEEKH- 300 (458)
Q Consensus 224 ~~~~~~~~~~~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~q~~~~~~~~~~~~~- 300 (458)
|+++++.++|+. .+|+......+|+|+.-|.+.|..+....+..+..+ .....+.+..++.|+..|+||.++.....
T Consensus 582 P~~LRRlKkDVEKSLp~K~E~IlrVels~lQk~yYk~ILtkN~~~LtkG~~g~~~~llNimmELkKccNHpyLi~gaee~ 661 (1373)
T KOG0384 582 PFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEK 661 (1373)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 89999988877522786312256540567899999999985399983667889802999999999864780004858888
Q ss_pred ---------------CHHCCCCCCCCHHHHHHC--CCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHH
Q ss_conf ---------------000134333325665412--488403422236788866410----------00265334458998
Q gi|255764515|r 301 ---------------WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCT 353 (458)
Q Consensus 301 ---------------~~~~~~~k~~~l~~il~~--~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~ 353 (458)
.....|+|+..|..++.+ ..|++|+||++.+.+++.|.. ++-|....+-|+.+
T Consensus 662 ~~~~~~~~~~d~~l~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~A 741 (1373)
T KOG0384 662 ILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQA 741 (1373)
T ss_pred HHHHHHHCCHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 88765301467999999971685886987789986189459971999999999999999738861114687616889988
Q ss_pred HHHHCCCCCC--EEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHH
Q ss_conf 7642458855--89984422111622001785999908998986864456666202202037877528999985899689
Q gi|255764515|r 354 IQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 431 (458)
Q Consensus 354 i~~f~~~~~~--vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide 431 (458)
|+.||++..+ |+|+||+|||.||||..|+ +||.||..|||....||.+|+ |||||++.|.||+||++||+||
T Consensus 742 iDhFnap~SddFvFLLSTRAGGLGINLatAD-TVIIFDSDWNPQNDLQAqARa-----HRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384 742 IDHFNAPDSDDFVFLLSTRAGGLGINLATAD-TVIIFDSDWNPQNDLQAQARA-----HRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCCCCC-EEEEECCCCCCCHHHHHHHHH-----HHHCCCCEEEEEEEECCCCHHH
T ss_conf 8743699988649998315676640224466-699968999950578999988-----6606645478999745784489
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999985541
Q gi|255764515|r 432 LVLQRLRTKSTIQDLLLNALK 452 (458)
Q Consensus 432 ~i~~~~~~K~~~~~~~~~~~~ 452 (458)
.|+++...|.-+--+|+..+.
T Consensus 816 EilERAk~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384 816 EILERAKLKMVLDHAVIQRMD 836 (1373)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999887515899987511
No 3
>KOG0389 consensus
Probab=100.00 E-value=0 Score=505.98 Aligned_cols=436 Identities=19% Similarity=0.270 Sum_probs=333.1
Q ss_pred CCCCHHHHHHHHHHH---HCC-CEEEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 987478999999999---679-8099958899868999999999997599-94999916046569999999985588881
Q gi|255764515|r 1 MNLAPHQTKIVDWIL---DHK-RCAIWASMGSGKTVSVLTALSYIHLWGE-KSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~---~~~-~~ll~~~~G~GKT~~al~~~~~l~~~~~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
++|.|||..||+|+. +++ +|+||||||+|||+|+|+++++|...|. .|-|||||+|+++| |.+||.||+ |.+
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwC--Psl 474 (941)
T KOG0389 398 IQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWC--PSL 474 (941)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHH-HHHHHHHHC--CCE
T ss_conf 73342220228999999974233053222057633489999999997299998379920316888-999999759--752
Q ss_pred EEEEEECCHHHHHHHH------CCCCCEEEECCCCHH--HHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 5999858978988873------077986998064202--33442000113220440453100246543115677776654
Q gi|255764515|r 76 NISVITGTVKQRTKVL------KTPAVLYVINFENLG--WLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKP 147 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~------~~~~~i~i~s~e~~~--~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~ 147 (458)
++..++|+..+|..+- ..+++|+++||..+. ...+.++..++|+.+|.||+|.+|| ..|.|++-++.+
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN----~~SeRy~~LM~I 550 (941)
T KOG0389 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN----RTSERYKHLMSI 550 (941)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHC----CCHHHHHHHCCC
T ss_conf 8774157689999999998616888528998721103886778999866666799613265421----334988875064
Q ss_pred HHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30598079965840231001013467751788877532778877736956403300002455554558999997424543
Q gi|255764515|r 148 AWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 148 ~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (458)
+|..|++|||||.||++.||+++|.|+-|. .|.....++..-+.............-. .. ..-..-...+.++++
T Consensus 551 --~An~RlLLTGTPLQNNL~ELiSLL~FvlP~-vF~~~~~dl~~if~~k~~~d~d~e~~~l-~q-erIsrAK~im~PFIL 625 (941)
T KOG0389 551 --NANFRLLLTGTPLQNNLKELISLLAFVLPK-VFDSSMEDLDVIFKAKKTSDGDIENALL-SQ-ERISRAKTIMKPFIL 625 (941)
T ss_pred --CCCCEEEEECCCCCCCHHHHHHHHHHHHHH-HHHCCCHHHHHHHHCCCCCCCHHHHHHH-HH-HHHHHHHHHHHHHHH
T ss_conf --655358851874201299999999997457-5532224799998246776430467788-99-999999975427889
Q ss_pred HHHCCCC-CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHCCCCCCCCCCC-------
Q ss_conf 3200001-0010011000345245368998889999998510334520-223478888754203541000223-------
Q gi|255764515|r 228 SLDIADY-QNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIE-AFNSASKTVKCLQLANGAVYYDEE------- 298 (458)
Q Consensus 228 ~~~~~~~-~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~q~~~~~~~~~~~------- 298 (458)
++.+.++ ..+|+...+...++|+..|...|+++....-......... .......++.++++++||.++...
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCHHHHH
T ss_conf 99899898746974325676424638999999999998511043223310256139999998735725778760388999
Q ss_pred ----------------C-------------------------------CCHHCCCCCCCCHHHHHHC--CCCCEEEEHHH
Q ss_conf ----------------4-------------------------------3000134333325665412--48840342223
Q gi|255764515|r 299 ----------------K-------------------------------HWKEVHDEKIKALEVIIEK--ANAAPIIVAYH 329 (458)
Q Consensus 299 ----------------~-------------------------------~~~~~~~~k~~~l~~il~~--~~~~kviif~~ 329 (458)
. ...-..|+|++.|..++.+ .+|.+|+||++
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEH
T ss_conf 99999727553320278888998876518999999986578765323884443003276999987887616877999608
Q ss_pred HHHHHHHHHHCC---------CCCCC-HHHHHHHHHHHCCC-CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 678886641000---------26533-44589987642458-85589984422111622001785999908998986864
Q gi|255764515|r 330 FNSDLARLQKAF---------PQGRT-LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 398 (458)
Q Consensus 330 ~~~~~~~i~~~~---------~~g~~-~~~r~~~i~~f~~~-~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~ 398 (458)
|..+++.+...+ .+|+| .+.|+.+|++|+.. .+.|+++|++|||.||||+.| |+||.+|+++||-...
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~A-n~VIihD~dFNP~dD~ 864 (941)
T KOG0389 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCA-NTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCC-CEEEEEECCCCCCCCC
T ss_conf 889999999999862733786148864138999998626677557999861467650211236-4589960577975520
Q ss_pred HHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 45666620220203787752899998589968999999999999999998554137
Q gi|255764515|r 399 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 454 (458)
Q Consensus 399 Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~~~~ 454 (458)
||++|+ ||.||+++|+||+||+++||||.|+++...|..+-.++.+..|.+
T Consensus 865 QAEDRc-----HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~ 915 (941)
T KOG0389 865 QAEDRC-----HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGV 915 (941)
T ss_pred HHHHHH-----HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 468888-----761785406999987457189999999987654555532576431
No 4
>KOG0392 consensus
Probab=100.00 E-value=0 Score=503.64 Aligned_cols=431 Identities=21% Similarity=0.294 Sum_probs=341.8
Q ss_pred CCCHHHHHHHHHHH--HC--CCEEEEECCCCCHHHHHHHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 87478999999999--67--980999588998689999999999975--------9994999916046569999999985
Q gi|255764515|r 2 NLAPHQTKIVDWIL--DH--KRCAIWASMGSGKTVSVLTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRW 69 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~--~~--~~~ll~~~~G~GKT~~al~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf 69 (458)
+||.||++||+|+. +. -.|+||||||+|||+|+|++++.-... ...|.|||||.++.. .|+.|+.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtG-HW~~E~~kf 1053 (1549)
T KOG0392 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTG-HWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCCHHHH-HHHHHHHHH
T ss_conf 8999988025899999873335454213463278999999978887502466011358758988700114-899999875
Q ss_pred CCCCCCEEEEEECCHHHHHHHHCC--CCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 588881599985897898887307--798699806420233442000113220440453100246543115677776654
Q gi|255764515|r 70 SNFSHMNISVITGTVKQRTKVLKT--PAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKP 147 (458)
Q Consensus 70 ~~~~~~~~~~~~g~~~~r~~~~~~--~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~ 147 (458)
+++ +++..+.|.+..|...-.. ..+|+|++|+.++++...+ ....|..+|+||+|-+||..+ +..++...+
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l-~~~~wNYcVLDEGHVikN~kt----kl~kavkqL 1126 (1549)
T KOG0392 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL-IKIDWNYCVLDEGHVIKNSKT----KLTKAVKQL 1126 (1549)
T ss_pred CCH--HHHHHHCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH-HHCCCCEEEECCCCEECCHHH----HHHHHHHHH
T ss_conf 630--1234313775877777754366656996589988789999-855222699407604211388----999999997
Q ss_pred HHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 3059807996584023100101346775178887753277887773695640330000245--55545589999974245
Q gi|255764515|r 148 AWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRY--TAKETAQKEIEAQLSDC 225 (458)
Q Consensus 148 ~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~ 225 (458)
.+.+|+.|||||++|++.|+|++++||.||. +|+ ..+|.++|..+.--......-.. ..+.-+.+.+++..-++
T Consensus 1127 --~a~hRLILSGTPIQNnvleLWSLFdFLMPGf-LGt-EKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392 1127 --RANHRLILSGTPIQNNVLELWSLFDFLMPGF-LGT-EKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred --HHCCEEEEECCCCCCCHHHHHHHHHHHCCCC-CCC-HHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf --6402377408876667999999999846665-671-888988755504542386556667876488999999988899
Q ss_pred HHHHHCCCC-CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 433200001-001001100034524536899888999999851033452--------02234788887542035410002
Q gi|255764515|r 226 CLSLDIADY-QNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENI--------EAFNSASKTVKCLQLANGAVYYD 296 (458)
Q Consensus 226 ~~~~~~~~~-~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~q~~~~~~~~~ 296 (458)
++|+.+.|+ .++|+..+....++|++.|.+.|+.+.+.+........- ...+....+..++.+|+||.+.-
T Consensus 1203 ~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392 1203 LLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHHHHCCHHHHHHEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99998888876488565331034067899999999988750352003464321057514889999999998548964442
Q ss_pred CCCC-----------------CHHCCCCCCCCHHHHHHCC----------------CCCEEEEHHHHHHHHHHHHHCC--
Q ss_conf 2343-----------------0001343333256654124----------------8840342223678886641000--
Q gi|255764515|r 297 EEKH-----------------WKEVHDEKIKALEVIIEKA----------------NAAPIIVAYHFNSDLARLQKAF-- 341 (458)
Q Consensus 297 ~~~~-----------------~~~~~~~k~~~l~~il~~~----------------~~~kviif~~~~~~~~~i~~~~-- 341 (458)
.... ....+++|+.+|..++.++ .+.+++|||+++.+++.+.+.+
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCEEEEEEEHHHHHHHHHHHHHH
T ss_conf 77750299998788774014777653526789999999817898875333671021155168764077799999999865
Q ss_pred -----------CCCCCHHHHHHHHHHHCCC-CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf -----------2653344589987642458-8558998442211162200178599990899898686445666620220
Q gi|255764515|r 342 -----------PQGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQ 409 (458)
Q Consensus 342 -----------~~g~~~~~r~~~i~~f~~~-~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~ 409 (458)
-|..++..|.+++++||++ .++||+.++.+||.||||+.| ++|||+|-.|||+...||++|.
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA-DTVVFvEHDWNPMrDLQAMDRA----- 1436 (1549)
T KOG0392 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA-DTVVFVEHDWNPMRDLQAMDRA----- 1436 (1549)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCC-CEEEEEECCCCCHHHHHHHHHH-----
T ss_conf 1147516997348889077799999716898513899962004532246787-5589972688832457887788-----
Q ss_pred HHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20378775289999858996899999999999999999855
Q gi|255764515|r 410 RQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 410 hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
||+||++.|+||+||++||+||+|+..+.=|..+++.|++.
T Consensus 1437 HRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInq 1477 (1549)
T KOG0392 1437 HRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQ 1477 (1549)
T ss_pred HHHCCCEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86267315666630230658998765788866888888732
No 5
>KOG0387 consensus
Probab=100.00 E-value=0 Score=495.95 Aligned_cols=428 Identities=22% Similarity=0.313 Sum_probs=332.5
Q ss_pred CCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996----79809995889986899999999999759--994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWG--EKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~--~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|+|||.++|+||++ +.+|+|+||||||||+|.|++++.|...+ .+|+|||||++++. ||.+|+.+|. |..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~-qW~~E~~~w~--p~~ 281 (923)
T KOG0387 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIH-QWMKEFQTWW--PPF 281 (923)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCHHHHH-HHHHHHHHHC--CCE
T ss_conf 8648889889999999732578762012357640158999998750243258659982488999-9999998747--653
Q ss_pred EEEEEECCHH-----------HHHHHH----CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHH
Q ss_conf 5999858978-----------988873----0779869980642023344200011322044045310024654311567
Q gi|255764515|r 76 NISVITGTVK-----------QRTKVL----KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKT 140 (458)
Q Consensus 76 ~~~~~~g~~~-----------~r~~~~----~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~ 140 (458)
.+.+++|+.. .+..++ .....+++++|+.+.... .......|+.+|+||+|+|||+. ++.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~-d~l~~~~W~y~ILDEGH~IrNpn----s~i 356 (923)
T KOG0387 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG-DDLLGILWDYVILDEGHRIRNPN----SKI 356 (923)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHEEEECCCCCEEEEEHHHHCCCC-CCCCCCCCCEEEECCCCCCCCCC----CHH
T ss_conf 7999714776544443101344312220353046847997422420047-52346503479823765046985----089
Q ss_pred HHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHH--HHHHHHHHH
Q ss_conf 777665430598079965840231001013467751788877532778877736956403300002455--554558999
Q gi|255764515|r 141 ARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYT--AKETAQKEI 218 (458)
Q Consensus 141 ~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 218 (458)
+.++.++ ++.+|+.||||||||++.|||+++.|+.||. ||. ...|...|......+......... ..+.-...+
T Consensus 357 slackki--~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~-Lgt-~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387 357 SLACKKI--RTVHRIILSGTPIQNNLTELWSLFDFVFPGK-LGT-LPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred HHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCC-CCC-HHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999861--5666488618621010899987766406774-455-17787630111003565789879999999999999
Q ss_pred HHHHHHHHHHHHCCCCC--CCCCCCEEEEEEECCHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99742454332000010--01001100034524536899888999999-8510334520223478888754203541000
Q gi|255764515|r 219 EAQLSDCCLSLDIADYQ--NIDKPILITKKVPLPQPVMKQYHKFQREL-YCDLQGENIEAFNSASKTVKCLQLANGAVYY 295 (458)
Q Consensus 219 ~~~l~~~~~~~~~~~~~--~l~~~~~~~~~v~l~~~~~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~ 295 (458)
+..+.++++++.+.+.. .+|.....+..+.|++.|.+.|.++.... +..+..+. .+.+..+.-++.+||||-++
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~---~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGK---RNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC---CCCEECHHHHHHHCCCCCCC
T ss_conf 987679999999988644217886525899856699999999986059899997498---44121518888645894102
Q ss_pred CCCC---------CCHHCCCCCCCCHHHHHH--CCCCCEEEEHHHHHHHHHHHHHCCC----------CCC-CHHHHHHH
Q ss_conf 2234---------300013433332566541--2488403422236788866410002----------653-34458998
Q gi|255764515|r 296 DEEK---------HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAFP----------QGR-TLDKDPCT 353 (458)
Q Consensus 296 ~~~~---------~~~~~~~~k~~~l~~il~--~~~~~kviif~~~~~~~~~i~~~~~----------~g~-~~~~r~~~ 353 (458)
+... ......++|++.+..++. ...|.+++.|++...+++.|..-+. +|. +...|+..
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~l 589 (923)
T KOG0387 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKL 589 (923)
T ss_pred CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 67642123588767895652169999999999861797799841377999999999873478538971588862010578
Q ss_pred HHHHCCC-CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHH
Q ss_conf 7642458-855899844221116220017859999089989868644566662022020378775289999858996899
Q gi|255764515|r 354 IQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 432 (458)
Q Consensus 354 i~~f~~~-~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~ 432 (458)
|++||++ ...|+++++++||.|+||+.| |.||.|||.|||+...||..|+| |+||++.|.||+|+++|||||.
T Consensus 590 Vd~Fne~~s~~VFLLTTrvGGLGlNLTgA-nRVIIfDPdWNPStD~QAreRaw-----RiGQkkdV~VYRL~t~gTIEEk 663 (923)
T KOG0387 590 VDRFNEDESIFVFLLTTRVGGLGLNLTGA-NRVIIFDPDWNPSTDNQARERAW-----RIGQKKDVVVYRLMTAGTIEEK 663 (923)
T ss_pred HHHHCCCCCEEEEEEEECCCCCCCCCCCC-CEEEEECCCCCCCCCHHHHHHHH-----HHCCCCCEEEEEEECCCCHHHH
T ss_conf 98636787457999973035541124567-55899799999764257888888-----6357465599997327718999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999855
Q gi|255764515|r 433 VLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 433 i~~~~~~K~~~~~~~~~~ 450 (458)
||.++.-|..+.+-++..
T Consensus 664 iY~rQI~Kq~Ltn~il~~ 681 (923)
T KOG0387 664 IYHRQIFKQFLTNRILKN 681 (923)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999998888887429
No 6
>KOG0390 consensus
Probab=100.00 E-value=0 Score=468.70 Aligned_cols=430 Identities=20% Similarity=0.285 Sum_probs=315.1
Q ss_pred CCCCHHHHHHHHHHHHC----------CCEEEEECCCCCHHHHHHHHHHHH-HHCCC-----CCEEEEECCHHHHHHHHH
Q ss_conf 98747899999999967----------980999588998689999999999-97599-----949999160465699999
Q gi|255764515|r 1 MNLAPHQTKIVDWILDH----------KRCAIWASMGSGKTVSVLTALSYI-HLWGE-----KSVLVIAPLRVAQSVWTS 64 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~----------~~~ll~~~~G~GKT~~al~~~~~l-~~~~~-----~~~LIv~P~~l~~~~W~~ 64 (458)
..|+|||.+|++|+.++ ++|++||+||+|||++.|+++..+ ...+. .+.|||||++++. .|.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~-nWkk 315 (776)
T KOG0390 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVN-NWKK 315 (776)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHH-HHHH
T ss_conf 412815787789978641131115888754720788764078889999999986867554446607984588887-8999
Q ss_pred HHHHHCCCCCCEEEEEECCHHH----HHHHH-----CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 9998558888159998589789----88873-----07798699806420233442000113220440453100246543
Q gi|255764515|r 65 EVQRWSNFSHMNISVITGTVKQ----RTKVL-----KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLR 135 (458)
Q Consensus 65 Ei~kf~~~~~~~~~~~~g~~~~----r~~~~-----~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~ 135 (458)
||.||.....+....+.|..+. ...++ ...+.+.++||+++....+.++. ..++++|+||+|++||.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~-~~~glLVcDEGHrlkN~--- 391 (776)
T KOG0390 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILL-IRPGLLVCDEGHRLKNS--- 391 (776)
T ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHC-CCCCEEEECCCCCCCCH---
T ss_conf 99874253555404542345256666678988622112578786369999999999854-78986997798885622---
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHH-HHHHHHH
Q ss_conf 115677776654305980799658402310010134677517888775327788777369564033000024-5555455
Q gi|255764515|r 136 QGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVR-YTAKETA 214 (458)
Q Consensus 136 ~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~ 214 (458)
.+++.+++.++ +++++++|||||+||+..|+|++++|++|+. ++. ..+|...+......+....... .......
T Consensus 392 -~s~~~kaL~~l--~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~-Lgs-~~sf~k~~~~~i~~~~~~~~s~e~~~~~~r 466 (776)
T KOG0390 392 -DSLTLKALSSL--KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGF-LGS-ISSFKKKFEIPILRGRDADASEEDREREER 466 (776)
T ss_pred -HHHHHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHCCHHH-CCC-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf -45899999746--8773699607753346999978885157011-255-378887751344235677855354525799
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999742454332000010-0100110003452453689988899999985103345202234788887542035410
Q gi|255764515|r 215 QKEIEAQLSDCCLSLDIADYQ-NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAV 293 (458)
Q Consensus 215 ~~~l~~~l~~~~~~~~~~~~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~ 293 (458)
..++......+++++...... -+|.....++....++.|.+.|.++.+........+ ..+....++.++|+||.
T Consensus 467 l~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~-----~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390 467 LQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKG-----YALELITKLKKLCNHPS 541 (776)
T ss_pred HHHHHHHHHHHEEECCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHCCHH
T ss_conf 9999999976522111203455388854699995780899999999987777654313-----22558899898736877
Q ss_pred CCC------CCCCC-----------------HHCCCCCCCCHHHHHH---CCCCCEEEEHHHHHHHHHHHHHC-------
Q ss_conf 002------23430-----------------0013433332566541---24884034222367888664100-------
Q gi|255764515|r 294 YYD------EEKHW-----------------KEVHDEKIKALEVIIE---KANAAPIIVAYHFNSDLARLQKA------- 340 (458)
Q Consensus 294 ~~~------~~~~~-----------------~~~~~~k~~~l~~il~---~~~~~kviif~~~~~~~~~i~~~------- 340 (458)
+.. .+... ....+.|+..|..+++ +..-.++++-++++.+++.+...
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred HHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCE
T ss_conf 63133223444122685765032124666555115668999999999986522317999622899999999997653844
Q ss_pred ---CCCCCCHHHHHHHHHHHCCCCC--CEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCC
Q ss_conf ---0265334458998764245885--58998442211162200178599990899898686445666620220203787
Q gi|255764515|r 341 ---FPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 415 (458)
Q Consensus 341 ---~~~g~~~~~r~~~i~~f~~~~~--~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~ 415 (458)
+.|.++..+|+.+|+.||++.. .|+++|++|||+||||. |++++|+||++|||+..+||++|+| |.||+
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLi-GAsRlil~D~dWNPa~d~QAmaR~~-----RdGQK 695 (776)
T KOG0390 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLI-GASRLILFDPDWNPAVDQQAMARAW-----RDGQK 695 (776)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEC-CCCEEEEECCCCCCHHHHHHHHHHC-----CCCCC
T ss_conf 89973877668888998733599887418998544555763201-3403899579998236789999764-----57874
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 752899998589968999999999999999998554
Q gi|255764515|r 416 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 451 (458)
Q Consensus 416 ~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~ 451 (458)
++|+||+|++.||+||.+|+++..|..+.+.+++.-
T Consensus 696 k~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390 696 KPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECC
T ss_conf 268999963279813888999987600132477332
No 7
>KOG0391 consensus
Probab=100.00 E-value=0 Score=438.26 Aligned_cols=428 Identities=20% Similarity=0.335 Sum_probs=318.8
Q ss_pred CCCHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCC-CEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87478999999999----679809995889986899999999999-75999-4999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWIL----DHKRCAIWASMGSGKTVSVLTALSYIH-LWGEK-SVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~----~~~~~ll~~~~G~GKT~~al~~~~~l~-~~~~~-~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|+.||..|++||. +|-+|+||||||+|||++.|+++++|- .++.| +-|||||++++.| |..||++|+ |++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwc--Pgl 691 (1958)
T KOG0391 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWC--PGL 691 (1958)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHH-HHHHHHHHC--CCC
T ss_conf 78888875179999998733443222331465145799999998750457787369851322113-367886527--753
Q ss_pred EEEEEECCHHHHHHH---HCC--CCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 599985897898887---307--798699806420233442000113220440453100246543115677776654305
Q gi|255764515|r 76 NISVITGTVKQRTKV---LKT--PAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~---~~~--~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
++..+.|+.++|... |.. ..+|.|+||..+-.+...+ ....|.++|+||||++||....+ -+++ +..+
T Consensus 692 KILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF-krkrWqyLvLDEaqnIKnfksqr----WQAl--lnfn 764 (1958)
T KOG0391 692 KILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF-KRKRWQYLVLDEAQNIKNFKSQR----WQAL--LNFN 764 (1958)
T ss_pred EEEEECCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHH-HHHCCCEEEHHHHHHHCCHHHHH----HHHH--HCCC
T ss_conf 576521778888887514468880488631068887377888-76411223214555423006788----9998--5300
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002455554558999997424543320
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLD 230 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (458)
+.++++|||||.+|++.|||++++||.|... .+...|. .|+...-.+...+...+. ......+++-+.++.+++.
T Consensus 765 sqrRLLLtgTPLqNslmELWSLmhFLmP~~f--~shd~fk-~wfsnPltgmiEgsqeyn--~klV~RLHkVlrPfiLRRl 839 (1958)
T KOG0391 765 SQRRLLLTGTPLQNSLMELWSLMHFLMPQTF--ASHDIFK-PWFSNPLTGMIEGSQEYN--HKLVIRLHKVLRPFILRRL 839 (1958)
T ss_pred HHHEEEECCCCHHHHHHHHHHHHHHHHCHHH--HHHHHHH-HHHCCCCHHHCCCCHHHC--HHHHHHHHHHHHHHHHHHH
T ss_conf 1200221187204679999999998702333--0014677-775181211100421214--1899999987678999998
Q ss_pred CCCCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----------
Q ss_conf 00010-0100110003452453689988899999985103345202234788887542035410002234----------
Q gi|255764515|r 231 IADYQ-NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEK---------- 299 (458)
Q Consensus 231 ~~~~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~---------- 299 (458)
+.|+. .+|....+.+.+.++..|...|+.+....-..-.-+....++.+.-+++|+.+||||-+++...
T Consensus 840 K~DVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l 919 (1958)
T KOG0391 840 KRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPL 919 (1958)
T ss_pred HHHHHHHCCHHHHHHEEEEHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
T ss_conf 88898753043244123100156777888886160146675237636899999999986379875778888861014751
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764515|r 300 -------------------------------------------------------------------------------- 299 (458)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (458)
T Consensus 920 ~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~at 999 (1958)
T KOG0391 920 EYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASAT 999 (1958)
T ss_pred ECCCCCCCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 02664321023444304799844543177755544223255430256563311225678899876546654450021036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764515|r 300 -------------------------------------------------------------------------------- 299 (458)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (458)
T Consensus 1000 sphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~ 1079 (1958)
T KOG0391 1000 SPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVM 1079 (1958)
T ss_pred CCCCCCCCCCCHHCCCCHHEEECCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCE
T ss_conf 87645432321001432000110332434471767626787304664214676444443000001466310017887301
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764515|r 300 -------------------------------------------------------------------------------- 299 (458)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (458)
T Consensus 1080 ~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~ 1159 (1958)
T KOG0391 1080 ALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICA 1159 (1958)
T ss_pred ECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHC
T ss_conf 04254336787788982102666688887423222157775113430356777789898888864147632223443213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764515|r 300 -------------------------------------------------------------------------------- 299 (458)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (458)
T Consensus 1160 lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~ 1239 (1958)
T KOG0391 1160 LPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQR 1239 (1958)
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 66343043533471344454888888999999875251364257873223799970002378999987788725643301
Q ss_pred -------------CCHHCCCCCCCCHHHHHH--CCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHH
Q ss_conf -------------300013433332566541--24884034222367888664100----------02653344589987
Q gi|255764515|r 300 -------------HWKEVHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTI 354 (458)
Q Consensus 300 -------------~~~~~~~~k~~~l~~il~--~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i 354 (458)
.......+|+..|.-++. ..+|+.|+||++...+++.+..- +-+....+.|+.+.
T Consensus 1240 q~~~~r~lqFPelrLiQyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLEqFLnyHgylY~RLDg~t~vEqRQaLm 1319 (1958)
T KOG0391 1240 QTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALM 1319 (1958)
T ss_pred HCCCHHHHCCCCHHEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
T ss_conf 00222653385101000042059999999999985585488516889999999999854256899844875388999999
Q ss_pred HHHCCC-CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHH
Q ss_conf 642458-8558998442211162200178599990899898686445666620220203787752899998589968999
Q gi|255764515|r 355 QEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433 (458)
Q Consensus 355 ~~f~~~-~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i 433 (458)
++||.+ .+-++|+|+.+||+||||+.| ++|||||..|||.-.-||-+|| |||||+++|+||+||+..||||.|
T Consensus 1320 erFNaD~RIfcfILSTrSggvGiNLtgA-DTVvFYDsDwNPtMDaQaQDrC-----hRIGqtRdVhIYRliSerTIEenI 1393 (1958)
T KOG0391 1320 ERFNADRRIFCFILSTRSGGVGINLTGA-DTVVFYDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLISERTIEENI 1393 (1958)
T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCCC-CEEEEECCCCCCHHHHHHHHHH-----HHHCCCCCEEEEEEECCCHHHHHH
T ss_conf 9736787169999852678642013467-4589845888801326889888-----874573413788740334078999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999855
Q gi|255764515|r 434 LQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 434 ~~~~~~K~~~~~~~~~~ 450 (458)
++...+|+.+-+.++++
T Consensus 1394 LKkanqKr~L~evaiqg 1410 (1958)
T KOG0391 1394 LKKANQKRMLDEVAIQG 1410 (1958)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 86322777666664215
No 8
>KOG0388 consensus
Probab=100.00 E-value=0 Score=429.39 Aligned_cols=420 Identities=20% Similarity=0.351 Sum_probs=316.4
Q ss_pred CCCHHHHHHHHHHHH---CC-CEEEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996---79-8099958899868999999999997599--94999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILD---HK-RCAIWASMGSGKTVSVLTALSYIHLWGE--KSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~---~~-~~ll~~~~G~GKT~~al~~~~~l~~~~~--~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
.|+.||+.|++|+.+ .+ +|+||||||+|||+++|+++++|..... +|.|||+|+|++- .|..||.+|. |.+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~-NWaqEisrFl--P~~ 643 (1185)
T KOG0388 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLH-NWAQEISRFL--PSF 643 (1185)
T ss_pred HHHHHHHCCHHHHHHHHHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHH-HHHHHHHHHC--CCC
T ss_conf 1688765007899999870344121333045326889999999987445887638960278776-7999999858--654
Q ss_pred EEEEEECCHHHHHHHH-----------CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 5999858978988873-----------07798699806420233442000113220440453100246543115677776
Q gi|255764515|r 76 NISVITGTVKQRTKVL-----------KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARAL 144 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~-----------~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l 144 (458)
++..+-|+..+|..+- +...+|+|+||+.+..+ ..++...+|..+|+|||+.+|+.. |.+-+.+
T Consensus 644 k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD-eky~qkvKWQYMILDEAQAIKSSs----S~RWKtL 718 (1185)
T KOG0388 644 KVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD-EKYLQKVKWQYMILDEAQAIKSSS----SSRWKTL 718 (1185)
T ss_pred EEECCCCCHHHHHHHHHHCCHHHHHCCCCCCEEEEEEEEEEECH-HHHHHHHHHHHEEHHHHHHHHHHH----HHHHHHH
T ss_conf 24347688026689997404444430479952899753111115-999986334520055787764322----5678877
Q ss_pred HHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCH-HHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6543059807996584023100101346775178887753277887773695-640330000245555455899999742
Q gi|255764515|r 145 AKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNT-TQIGSHIGAVRYTAKETAQKEIEAQLS 223 (458)
Q Consensus 145 ~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (458)
++.+|+++++||||||+|+.-|||++|+|+.|. ++.+..+|- +|+.. .+.+... .....+.-+..++..+.
T Consensus 719 --LsF~cRNRLLLTGTPIQNsMqELWALLHFIMPs--LFDshneFs-eWFSKdIEshAe~---~~tlneqqL~RLH~ILK 790 (1185)
T KOG0388 719 --LSFKCRNRLLLTGTPIQNSMQELWALLHFIMPS--LFDSHNEFS-EWFSKDIESHAEM---NTTLNEQQLQRLHAILK 790 (1185)
T ss_pred --HHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHH--HHHCHHHHH-HHHHHHHHHHHHH---CCCCCHHHHHHHHHHHH
T ss_conf --402103404531885301799999999998667--531347788-9886525768875---57727999999999872
Q ss_pred HHHHHHHCCCC-CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC--------
Q ss_conf 45433200001-001001100034524536899888999999851033452022347888875420354100--------
Q gi|255764515|r 224 DCCLSLDIADY-QNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY-------- 294 (458)
Q Consensus 224 ~~~~~~~~~~~-~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~-------- 294 (458)
++|+++.++++ .++.....+.+.+.++..|...|..+.+.... ......++.++..|+||-+
T Consensus 791 PFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~---------~E~~~~vmQlrKVCNHPdLFer~e~~s 861 (1185)
T KOG0388 791 PFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISS---------MEMENLVMQLRKVCNHPDLFERLEPRS 861 (1185)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCCCHHHHHHCCCCC
T ss_conf 89999988788877436317999840068899999999988668---------899999999998648868876347764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|255764515|r 295 -------------------------------------------------------------------------------- 294 (458)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (458)
T Consensus 862 ~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n 941 (1185)
T KOG0388 862 GLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRN 941 (1185)
T ss_pred EEEEECCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEEECCCCCCCCC
T ss_conf 16777115777787378886011022789999999877768999998750676525898511002103552258732242
Q ss_pred ---------------------------------------------------CCCCCCCHH--------------------
Q ss_conf ---------------------------------------------------022343000--------------------
Q gi|255764515|r 295 ---------------------------------------------------YDEEKHWKE-------------------- 303 (458)
Q Consensus 295 ---------------------------------------------------~~~~~~~~~-------------------- 303 (458)
...+.+..+
T Consensus 942 ~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~ 1021 (1185)
T KOG0388 942 VEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMN 1021 (1185)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCHH
T ss_conf 99999999998428520036889988647888865400343564578974320356788887556675666636348477
Q ss_pred ---CCCCCCCCHHHHHH--CCCCCEEEEHHHHHHHHHHHHHCC---------CCCC-CHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf ---13433332566541--248840342223678886641000---------2653-34458998764245885589984
Q gi|255764515|r 304 ---VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQKAF---------PQGR-TLDKDPCTIQEWNEGKIPLLFAH 368 (458)
Q Consensus 304 ---~~~~k~~~l~~il~--~~~~~kviif~~~~~~~~~i~~~~---------~~g~-~~~~r~~~i~~f~~~~~~vli~s 368 (458)
..|+|+..|.+++. +..|..+++|.+...+++.+...+ .+|+ ....|..++..|+.+++-|+++|
T Consensus 1022 ~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLS 1101 (1185)
T KOG0388 1022 TFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLS 1101 (1185)
T ss_pred HHHCCCCCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 65316654363998989864178258821579899999999987604606985575404678888863357755899974
Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42211162200178599990899898686445666620220203787752899998589968999999999999999998
Q gi|255764515|r 369 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLL 448 (458)
Q Consensus 369 ~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~ 448 (458)
+.|||.||||+ |+++|||||..|||....||++|. ||.||+++|+||+|+++||+||+|+++..+|..+...|+
T Consensus 1102 TRAGGLGINLT-AADTViFYdSDWNPT~D~QAMDRA-----HRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm 1175 (1185)
T KOG0388 1102 TRAGGLGINLT-AADTVIFYDSDWNPTADQQAMDRA-----HRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVM 1175 (1185)
T ss_pred CCCCCCCCCCC-CCCEEEEECCCCCCCHHHHHHHHH-----HHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 04676620111-242489944889963216778888-----750675430456520013179999987534788999977
Q ss_pred HHHH
Q ss_conf 5541
Q gi|255764515|r 449 NALK 452 (458)
Q Consensus 449 ~~~~ 452 (458)
.+.+
T Consensus 1176 ~G~~ 1179 (1185)
T KOG0388 1176 HGNI 1179 (1185)
T ss_pred CCCC
T ss_conf 0773
No 9
>KOG4439 consensus
Probab=100.00 E-value=0 Score=431.65 Aligned_cols=420 Identities=20% Similarity=0.297 Sum_probs=301.1
Q ss_pred CCCHHHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHHHH-------CC--CCCEEEEECCHHHHHHHHHHHH
Q ss_conf 8747899999999967-----98099958899868999999999997-------59--9949999160465699999999
Q gi|255764515|r 2 NLAPHQTKIVDWILDH-----KRCAIWASMGSGKTVSVLTALSYIHL-------WG--EKSVLVIAPLRVAQSVWTSEVQ 67 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~-----~~~ll~~~~G~GKT~~al~~~~~l~~-------~~--~~~~LIv~P~~l~~~~W~~Ei~ 67 (458)
.|+|||..|..||..+ .+|+|+||||+|||+++|+++..-+. .+ ..++|||||+|++ +||..|++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli-~qW~~Ev~ 403 (901)
T KOG4439 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLI-HQWEAEVA 403 (901)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH-HHHHHHHH
T ss_conf 44514665414310013479998650213345530679999998899987541445655772886739999-98899999
Q ss_pred HHCCCCCCEEEEEECCHH-HHHHHHCCCCCEEEECCCCHHHHH----H-----HCCCCCCCCEEECCCCCCCCCCCCCCH
Q ss_conf 855888815999858978-988873077986998064202334----4-----200011322044045310024654311
Q gi|255764515|r 68 RWSNFSHMNISVITGTVK-QRTKVLKTPAVLYVINFENLGWLV----Q-----ELKGTWPFATIVVDESTKLKSFRLRQG 137 (458)
Q Consensus 68 kf~~~~~~~~~~~~g~~~-~r~~~~~~~~~i~i~s~e~~~~~~----~-----~~~~~~~~~~iIiDEaH~lkn~~~~~~ 137 (458)
+-.....+.|++++|+.+ .-.......|+++|+||..+.+.- + .-+....|..||+||||.+||..
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~---- 479 (901)
T KOG4439 404 RRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN---- 479 (901)
T ss_pred HHHHHCCEEEEEECCCCCCCCCHHHHHHCCEEEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC----
T ss_conf 9986350079986178615478888732566998521101577303331567427777567775342455413663----
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 56777766543059807996584023100101346775178887753277887773695640330000245555455899
Q gi|255764515|r 138 SKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217 (458)
Q Consensus 138 s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (458)
+++..++-+ ..++++|+||||||+|+..|+|+++.||.-. +|+. +.. |..........+. ..
T Consensus 480 tq~S~AVC~--L~a~~RWclTGTPiqNn~~DvysLlrFLr~~-pF~D-~~~----Wke~i~~~s~~g~----------~r 541 (901)
T KOG4439 480 TQCSKAVCK--LSAKSRWCLTGTPIQNNLWDVYSLLRFLRCP-PFGD-LKQ----WKENIDNMSKGGA----------NR 541 (901)
T ss_pred HHHHHHHHH--HHHCCEEECCCCCCCCCHHHHHHHHHHHCCC-CCCH-HHH----HHHHCCCCCCCCH----------HH
T ss_conf 067889887--7620413312675444416799999996689-8503-778----8874367454504----------56
Q ss_pred HHHHHHHHHHHHHC------CCCCCCCCCCEEEEEEECCHHHHHHHHHHHH---HHHHH----CCCC----C--------
Q ss_conf 99974245433200------0010010011000345245368998889999---99851----0334----5--------
Q gi|255764515|r 218 IEAQLSDCCLSLDI------ADYQNIDKPILITKKVPLPQPVMKQYHKFQR---ELYCD----LQGE----N-------- 272 (458)
Q Consensus 218 l~~~l~~~~~~~~~------~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~---~~~~~----~~~~----~-------- 272 (458)
+.-..+..++++.+ .+...+|......+.++|+..+.+.|+-+.. .++.. ..+. .
T Consensus 542 lnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~ 621 (901)
T KOG4439 542 LNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFI 621 (901)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHC
T ss_conf 66654467765657765046641027540338899763404889999999999999999987665403545766632010
Q ss_pred ----------------------CH-HHHHHHHHHHHHHCCCCCCCCCCC----------------CCC------------
Q ss_conf ----------------------20-223478888754203541000223----------------430------------
Q gi|255764515|r 273 ----------------------IE-AFNSASKTVKCLQLANGAVYYDEE----------------KHW------------ 301 (458)
Q Consensus 273 ----------------------~~-~~~~~~~~~~l~q~~~~~~~~~~~----------------~~~------------ 301 (458)
.. ....+..+.+|+|+|+|+-..... ...
T Consensus 622 ~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~ 701 (901)
T KOG4439 622 GGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKND 701 (901)
T ss_pred CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 24554445333461232047732467899999999987730701202645878763047640334434456787654214
Q ss_pred -----------------H-----HCCCCCCCCHHHHHHC---CCCCEEEEHHHHHHHHHHHHHCCC----------CCCC
Q ss_conf -----------------0-----0134333325665412---488403422236788866410002----------6533
Q gi|255764515|r 302 -----------------K-----EVHDEKIKALEVIIEK---ANAAPIIVAYHFNSDLARLQKAFP----------QGRT 346 (458)
Q Consensus 302 -----------------~-----~~~~~k~~~l~~il~~---~~~~kviif~~~~~~~~~i~~~~~----------~g~~ 346 (458)
. ...|+|+.+..++++. ...+|++|.+++..+++.+...+. +...
T Consensus 702 ~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~ 781 (901)
T KOG4439 702 ETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVL 781 (901)
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 42256654223666433444034453057888999999886136650564267788887888887507713662057404
Q ss_pred HHHHHHHHHHHC--CCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEE
Q ss_conf 445899876424--588558998442211162200178599990899898686445666620220203787752899998
Q gi|255764515|r 347 LDKDPCTIQEWN--EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 424 (458)
Q Consensus 347 ~~~r~~~i~~f~--~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li 424 (458)
..+|+.+++.|| +|..+|+++|..|||+||||. ++|++|++|++|||+..+||.+|| ||+||+++|+||+|+
T Consensus 782 vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~-GaNHlilvDlHWNPaLEqQAcDRI-----YR~GQkK~V~IhR~~ 855 (901)
T KOG4439 782 VKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLI-GANHLILVDLHWNPALEQQACDRI-----YRMGQKKDVFIHRLM 855 (901)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEC-CCCEEEEEECCCCHHHHHHHHHHH-----HHHCCCCCEEEEEEE
T ss_conf 06789999998860488059999970674135203-563389985466878889998999-----984266725899987
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58996899999999999999999855
Q gi|255764515|r 425 AQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 425 ~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
++||+|++|...++.|.+++..|+++
T Consensus 856 ~~gTvEqrV~~LQdkKldlA~~VL~G 881 (901)
T KOG4439 856 CKGTVEQRVKSLQDKKLDLAKGVLTG 881 (901)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 43728999998888888877664257
No 10
>KOG0386 consensus
Probab=100.00 E-value=0 Score=433.55 Aligned_cols=432 Identities=20% Similarity=0.283 Sum_probs=334.9
Q ss_pred CCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996----798099958899868999999999997--59994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHL--WGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~--~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|++||..+++||.. |.+++||||||+|||+++|+++.+|.. ...+|.|||||.+++.| |..||.+|+ |.+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWa--PSv 470 (1157)
T KOG0386 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWA--PSV 470 (1157)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-CHHHCCCCC--CCE
T ss_conf 77442453157776315898243320010441488999999999997056798389543545677-122024346--651
Q ss_pred EEEEEECCHHHHHHHH----CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5999858978988873----077986998064202334420001132204404531002465431156777766543059
Q gi|255764515|r 76 NISVITGTVKQRTKVL----KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES 151 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~----~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~ 151 (458)
....+.|++..|.... -+...|++++|+.+-. .+.++..+.|..+||||+|++||. .++....+.. ...+
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik-dk~lLsKI~W~yMIIDEGHRmKNa----~~KLt~~L~t-~y~~ 544 (1157)
T KOG0386 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK-DKALLSKISWKYMIIDEGHRMKNA----ICKLTDTLNT-HYRA 544 (1157)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEEHHHHCC-CHHHHHCCCCCCEEECCCCCCCCH----HHHHHHHHHC-CCCC
T ss_conf 356541788888667898860011034200877537-999984469863563222224512----5578877502-5521
Q ss_pred CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf 8079965840231001013467751788877532778877736956403300002455554558--99999742454332
Q gi|255764515|r 152 ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQ--KEIEAQLSDCCLSL 229 (458)
Q Consensus 152 ~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~ 229 (458)
.+|++|||||++|++.|+|++|+|+-|.. +.+..+| +.|++..--. ..........+..+ ..+++-+.++.+++
T Consensus 545 q~RLLLTGTPLQN~LpELWaLLNFlLP~I--FnS~~~F-eqWFN~PFan-tGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386 545 QRRLLLTGTPLQNNLPELWALLNFLLPNI--FNSCKAF-EQWFNQPFAN-TGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred HHHHHHCCCHHHHCCHHHHHHHHHHCCCH--HHHHHHH-HHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21565328832221177899998763521--1047579-8986126664-387312552278999999887664788876
Q ss_pred HCCCC-CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCC------
Q ss_conf 00001-001001100034524536899888999999851033--452022347888875420354100022343------
Q gi|255764515|r 230 DIADY-QNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEEKH------ 300 (458)
Q Consensus 230 ~~~~~-~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~------ 300 (458)
.+.++ ..+|..+..+..+.|+.-|...|..+........++ +...........+.++.+|+||..++..+.
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred HHHHHHHHCCHHHHHHHHEEHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
T ss_conf 56777664734554763020205667631888847988767210034641154576999985477215444303422002
Q ss_pred ---CHHCCCCCCCCHHHHHHC--CCCCEEEEHHHHHHHHHHHHH---------CCCCCCCH-HHHHHHHHHHCCCCC--C
Q ss_conf ---000134333325665412--488403422236788866410---------00265334-458998764245885--5
Q gi|255764515|r 301 ---WKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK---------AFPQGRTL-DKDPCTIQEWNEGKI--P 363 (458)
Q Consensus 301 ---~~~~~~~k~~~l~~il~~--~~~~kviif~~~~~~~~~i~~---------~~~~g~~~-~~r~~~i~~f~~~~~--~ 363 (458)
.....++|+..|..++.. ..|..|+.|++.+..++.+.- ...+|+|. ++|-..++.||.++. .
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf 780 (1157)
T KOG0386 701 DIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYF 780 (1157)
T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 70578773147999976608877327601157778888999999986624212441587661468999997159998625
Q ss_pred EEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 89984422111622001785999908998986864456666202202037877528999985899689999999999999
Q gi|255764515|r 364 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 443 (458)
Q Consensus 364 vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~ 443 (458)
+++.|+.|||.|+|||.|++++| ||..|||....||.+|. ||+||++.|.|+++++-++++|.|+.....|.++
T Consensus 781 ~FllstragglglNlQtadtvii-fdsdwnp~~d~qaqdra-----hrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~ 854 (1157)
T KOG0386 781 IFLLSTRAGGLGLNLQTADTVII-FDSDWNPHQDLQAQDRA-----HRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDV 854 (1157)
T ss_pred EEEEEECCCCCCCCHHHCCEEEE-ECCCCCCHHHHHHHHHH-----HHHHCHHHEEEEEEEHHHHHHHHHHHHHHHHCCC
T ss_conf 64332102555403211352788-65888831679999999-----9750212301123100407999999999975074
Q ss_pred HHHHHHHHH
Q ss_conf 999985541
Q gi|255764515|r 444 QDLLLNALK 452 (458)
Q Consensus 444 ~~~~~~~~~ 452 (458)
..-++.+++
T Consensus 855 d~kviqag~ 863 (1157)
T KOG0386 855 DGKVIQAGK 863 (1157)
T ss_pred HHHHHHCCC
T ss_conf 176643012
No 11
>KOG1015 consensus
Probab=100.00 E-value=0 Score=426.42 Aligned_cols=433 Identities=22% Similarity=0.297 Sum_probs=312.8
Q ss_pred CCCCHHHHHHHHHHHHC-------------CCEEEEECCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCHHHHHHHHH
Q ss_conf 98747899999999967-------------98099958899868999999999997---599949999160465699999
Q gi|255764515|r 1 MNLAPHQTKIVDWILDH-------------KRCAIWASMGSGKTVSVLTALSYIHL---WGEKSVLVIAPLRVAQSVWTS 64 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~-------------~~~ll~~~~G~GKT~~al~~~~~l~~---~~~~~~LIv~P~~l~~~~W~~ 64 (458)
.+|.|||..+|.||++. -+|+|||.||||||+|.++++-.... .|-+++|||||.+++. .|..
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~-NW~~ 745 (1567)
T KOG1015 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL-NWMN 745 (1567)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHH
T ss_conf 644722013025899999999886127998631778750456400146788899874204785689972359988-9999
Q ss_pred HHHHHCCC----CCCEEEEEEC--CHHHH---HHHHCCCCCEEEECCCCHHHHHHHC--------------CCCCCCCEE
Q ss_conf 99985588----8815999858--97898---8873077986998064202334420--------------001132204
Q gi|255764515|r 65 EVQRWSNF----SHMNISVITG--TVKQR---TKVLKTPAVLYVINFENLGWLVQEL--------------KGTWPFATI 121 (458)
Q Consensus 65 Ei~kf~~~----~~~~~~~~~g--~~~~r---~~~~~~~~~i~i~s~e~~~~~~~~~--------------~~~~~~~~i 121 (458)
||++|... ..++|..+.. .+..| ...|.....|+|+.|++++.+...- +-.-.+|+|
T Consensus 746 EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~v 825 (1567)
T KOG1015 746 EFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFV 825 (1567)
T ss_pred HHHHHCCCCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99986124222466212021202674889999999975297799736888877514560356799999986057899768
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCC
Q ss_conf 40453100246543115677776654305980799658402310010134677517888775327788777369564033
Q gi|255764515|r 122 VVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGS 201 (458)
Q Consensus 122 IiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~ 201 (458)
||||+|-+||..+ ...+++.+. .++++|+|||||.+|++.|+|.|++|+-|+ .||. +.+|++||.+..+.+.
T Consensus 826 VCDE~HiLKNeks----a~Skam~~i--rtkRRI~LTGTPLQNNLmEY~CMVnFVKe~-lLGs-~~EfrNRFvNpI~nGq 897 (1567)
T KOG1015 826 VCDEGHILKNEKS----AVSKAMNSI--RTKRRIILTGTPLQNNLMEYHCMVNFVKEN-LLGS-IKEFRNRFVNPIQNGQ 897 (1567)
T ss_pred EECCHHHHCCCHH----HHHHHHHHH--HHHEEEEEECCCHHHHHHHHHHHHHHCCCC-CCCC-CHHHHHHHCCCCCCCC
T ss_conf 7242122135247----899999987--764047752671133248887888760433-3457-5889976238222675
Q ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHH---
Q ss_conf 0000245--55545589999974245433200001-00100110003452453689988899999985103345202---
Q gi|255764515|r 202 HIGAVRY--TAKETAQKEIEAQLSDCCLSLDIADY-QNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEA--- 275 (458)
Q Consensus 202 ~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~-~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~--- 275 (458)
....... ........+++..|..++.+....-. ..+||....++.|.+++-|.++|..+.... .-.+.+...
T Consensus 898 ~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~--~~~G~d~eg~~g 975 (1567)
T KOG1015 898 CADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHL--TGVGNDSEGGRG 975 (1567)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHC--CCCCCCCCCCCC
T ss_conf 577738889999888899999998787531055531458986269999862599999999998631--256875335442
Q ss_pred --HHHHHHHHHHHHCCCCCCCC----------------------------------------------------------
Q ss_conf --23478888754203541000----------------------------------------------------------
Q gi|255764515|r 276 --FNSASKTVKCLQLANGAVYY---------------------------------------------------------- 295 (458)
Q Consensus 276 --~~~~~~~~~l~q~~~~~~~~---------------------------------------------------------- 295 (458)
.+.+...-.+.+|..||...
T Consensus 976 ~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~ 1055 (1567)
T KOG1015 976 AGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSG 1055 (1567)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 23567788999999964887423135665411335643200255678741001236663011023344566655555556
Q ss_pred -----------------------------------------------------------CCCCCCHHCCCCCCCCHHHHH
Q ss_conf -----------------------------------------------------------223430001343333256654
Q gi|255764515|r 296 -----------------------------------------------------------DEEKHWKEVHDEKIKALEVII 316 (458)
Q Consensus 296 -----------------------------------------------------------~~~~~~~~~~~~k~~~l~~il 316 (458)
.+.......+|+|+..|.+|+
T Consensus 1056 ~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL 1135 (1567)
T KOG1015 1056 SDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEIL 1135 (1567)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
T ss_conf 67752443210021036656764223788625789863214554477888557677665441123440376224599999
Q ss_pred H--CCCCCEEEEHHHHHHHHHHHHHCC-------------------------------CCC-CCHHHHHHHHHHHCCCC-
Q ss_conf 1--248840342223678886641000-------------------------------265-33445899876424588-
Q gi|255764515|r 317 E--KANAAPIIVAYHFNSDLARLQKAF-------------------------------PQG-RTLDKDPCTIQEWNEGK- 361 (458)
Q Consensus 317 ~--~~~~~kviif~~~~~~~~~i~~~~-------------------------------~~g-~~~~~r~~~i~~f~~~~- 361 (458)
. +.-|.|++||++-...++.|...+ .+| .+..+|..+.++||++.
T Consensus 1136 ~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~N 1215 (1567)
T KOG1015 1136 RMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTN 1215 (1567)
T ss_pred HHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99997365368762333225899999986024686544464222555522047743775485537889999998468335
Q ss_pred --CCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf --558998442211162200178599990899898686445666620220203787752899998589968999999999
Q gi|255764515|r 362 --IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 439 (458)
Q Consensus 362 --~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~ 439 (458)
.+.+|+|++||+.||||- |+|+||.||-.|||+-..|++-|+ ||+||++||+||+|+|.||+|++||+++..
T Consensus 1216 lRaRl~LISTRAGsLGiNLv-AANRVIIfDasWNPSyDtQSIFRv-----yRfGQtKPvyiYRfiAqGTmEeKIYkRQVT 1289 (1567)
T KOG1015 1216 LRARLFLISTRAGSLGINLV-AANRVIIFDASWNPSYDTQSIFRV-----YRFGQTKPVYIYRFIAQGTMEEKIYKRQVT 1289 (1567)
T ss_pred CEEEEEEEEECCCCCCCCEE-ECCEEEEEECCCCCCCCHHHHHHH-----HHHCCCCCEEEHHHHHCCCHHHHHHHHHHH
T ss_conf 01379999622676520023-314289994555875206889999-----860576731401445414088899998876
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999855
Q gi|255764515|r 440 KSTIQDLLLNA 450 (458)
Q Consensus 440 K~~~~~~~~~~ 450 (458)
|..++-.|+|.
T Consensus 1290 Kqsls~RVVDe 1300 (1567)
T KOG1015 1290 KQSLSFRVVDE 1300 (1567)
T ss_pred HHHHHHHHHHH
T ss_conf 75543543029
No 12
>KOG1000 consensus
Probab=100.00 E-value=0 Score=412.04 Aligned_cols=406 Identities=22% Similarity=0.260 Sum_probs=296.1
Q ss_pred CCCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8747899999999967-980999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDH-KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~-~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.|.|||.++|.|.+++ +|++||||||+|||+|||+++.+. ..+|+.|||||+++.. .|.+++++|.+.-.. +.++
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yy--raEwplliVcPAsvrf-tWa~al~r~lps~~p-i~vv 273 (689)
T KOG1000 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYY--RAEWPLLIVCPASVRF-TWAKALNRFLPSIHP-IFVV 273 (689)
T ss_pred HHCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH--HHCCCEEEEECHHHHH-HHHHHHHHHCCCCCC-EEEE
T ss_conf 61703565478898538739984124541688999999998--6048679992278868-999999985310260-4788
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 58978988873077986998064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
.+..+. ..-......|.|+||+.+..+.+.+.. .+|.+||+||+|++|+..+ ++.+++.-+...++++++||||
T Consensus 274 ~~~~D~-~~~~~t~~~v~ivSye~ls~l~~~l~~-~~~~vvI~DEsH~Lk~skt----kr~Ka~~dllk~akhvILLSGT 347 (689)
T KOG1000 274 DKSSDP-LPDVCTSNTVAIVSYEQLSLLHDILKK-EKYRVVIFDESHMLKDSKT----KRTKAATDLLKVAKHVILLSGT 347 (689)
T ss_pred ECCCCC-CCCCCCCCEEEEEEHHHHHHHHHHHHC-CCCEEEEEECHHHHHCCCH----HHHHHHHHHHHHHHHEEEECCC
T ss_conf 526677-654566772789878999999998736-5411899712565410112----2366665699876444772388
Q ss_pred CHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCC-CCC
Q ss_conf 023100101346775178887753277887773695640330000245555455899999742-454332000010-010
Q gi|255764515|r 161 PSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLS-DCCLSLDIADYQ-NID 238 (458)
Q Consensus 161 Pi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~-~l~ 238 (458)
|.-.+|.|||+++..+++ .+++.|.+|-.+||+..+...... ..+..+..++...+. ..|+++.+.+.+ ++|
T Consensus 348 PavSRP~elytqi~avd~--tlfp~f~efa~rYCd~k~vr~~~D----ykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLP 421 (689)
T KOG1000 348 PAVSRPSELYTQIRAVDH--TLFPNFHEFAIRYCDGKQVRFCFD----YKGCTNLEELAALLFKRLMIRRLKADVLKQLP 421 (689)
T ss_pred CCCCCCHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCCCCEEEE----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 556781442135554121--004228998777537641102450----37787789999999999999999998875388
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHH-
Q ss_conf 0110003452453689988899999985103345202234788887542035410002234300013433332566541-
Q gi|255764515|r 239 KPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE- 317 (458)
Q Consensus 239 ~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~- 317 (458)
+. ...+.+.....+-...+.+..+... ....+....+....... +......|+..+.+.+-
T Consensus 422 pK-rr~Vv~~~~gr~da~~~~lv~~a~~-~t~~~~~e~~~~~l~l~----------------y~~tgiaK~~av~eyi~~ 483 (689)
T KOG1000 422 PK-RREVVYVSGGRIDARMDDLVKAAAD-YTKVNSMERKHESLLLF----------------YSLTGIAKAAAVCEYILE 483 (689)
T ss_pred CC-CEEEEEECCCCCCHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH----------------HHHHCCCCCHHHHHHHHH
T ss_conf 01-0489997478622678999987532-00123666656778878----------------987511020889999974
Q ss_pred -----CCCCCEEEEHHHHHHHHHHHHHCC---------CCCCCH-HHHHHHHHHHC-CCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf -----248840342223678886641000---------265334-45899876424-58855899844221116220017
Q gi|255764515|r 318 -----KANAAPIIVAYHFNSDLARLQKAF---------PQGRTL-DKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYG 381 (458)
Q Consensus 318 -----~~~~~kviif~~~~~~~~~i~~~~---------~~g~~~-~~r~~~i~~f~-~~~~~vli~s~~~~~~GlnL~~a 381 (458)
...+.|.+||+|+..+++.|...+ ++|+++ .+|...++.|+ +.+..|.++|+.|||+||+|+ |
T Consensus 484 ~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t-A 562 (689)
T KOG1000 484 NYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT-A 562 (689)
T ss_pred CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEE-C
T ss_conf 744456887359999414879999999998747975885698984347899987314631479999986314441465-1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 859999089989868644566662022020378775289999858996899999999999999999
Q gi|255764515|r 382 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 447 (458)
Q Consensus 382 ~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~ 447 (458)
++.|+|.+++|||..+.||++|+ ||+||+..|.||+|+++||+|+.+|..+.+|.+...++
T Consensus 563 a~~VVFaEL~wnPgvLlQAEDRa-----HRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000 563 ASVVVFAELHWNPGVLLQAEDRA-----HRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred CCEEEEEEECCCCCEEEECHHHH-----HHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 32589998237875477514656-----64056651138999954845777789999998788662
No 13
>KOG1002 consensus
Probab=100.00 E-value=0 Score=410.71 Aligned_cols=430 Identities=19% Similarity=0.248 Sum_probs=307.5
Q ss_pred CCCCHHHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 98747899999999967-----9809995889986899999999999759994999916046569999999985588881
Q gi|255764515|r 1 MNLAPHQTKIVDWILDH-----KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~-----~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
|.|.|||.+++.|+... .+|+||||||.|||+|+|+++.. .-...++|||||.-.+. ||..||.+|+. ..+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlm-QW~nEI~~~T~-gsl 258 (791)
T KOG1002 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALM-QWKNEIERHTS-GSL 258 (791)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCHHHHHHHHHHH--CCCCCCEEEECCHHHHH-HHHHHHHHHCC-CCE
T ss_conf 213144677788887735543124311243146417999999986--23568706975489999-99999987625-764
Q ss_pred EEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHH----------------HCCCCCCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 59998589789888730779869980642023344----------------20001132204404531002465431156
Q gi|255764515|r 76 NISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQ----------------ELKGTWPFATIVVDESTKLKSFRLRQGSK 139 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~----------------~~~~~~~~~~iIiDEaH~lkn~~~~~~s~ 139 (458)
++.+++|..+.....-...|++++++|..+....+ .++-.++|..||+||||.+|+. .|.
T Consensus 259 kv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R----~sn 334 (791)
T KOG1002 259 KVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR----QSN 334 (791)
T ss_pred EEEEEECCCCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCEEEEEEHHHHCCCCCC----CCC
T ss_conf 7999726423577888606767997018788898740234211377424532333101023522120253101----332
Q ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHH-CCHH---------------------
Q ss_conf 777766543059807996584023100101346775178887753277887773-6956---------------------
Q gi|255764515|r 140 TARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARW-FNTT--------------------- 197 (458)
Q Consensus 140 ~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~-~~~~--------------------- 197 (458)
++|+.- ...+.|+|+|||||.+|++.|||++++||+-. ++. +.|.... |...
T Consensus 335 TArAV~--~L~tt~rw~LSGTPLQNrigElySLiRFL~i~-Pfs---yyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~ 408 (791)
T KOG1002 335 TARAVF--ALETTYRWCLSGTPLQNRIGELYSLIRFLNIN-PFS---YYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHT 408 (791)
T ss_pred HHHHHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-CCH---HHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHH
T ss_conf 788887--66766532205883011278999999987068-404---435432243422111024456875441065654
Q ss_pred -HHCC-CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf -4033-0000245----555455899999742454332000---010010011000345245368998889999998510
Q gi|255764515|r 198 -QIGS-HIGAVRY----TAKETAQKEIEAQLSDCCLSLDIA---DYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDL 268 (458)
Q Consensus 198 -~~~~-~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~---~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~ 268 (458)
.++. ....... -++..+...+...+..+++++.+- +.+.+|+..+..+.--++.+....|+.+-......+
T Consensus 409 ~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkf 488 (791)
T KOG1002 409 CFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKF 488 (791)
T ss_pred HHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32122004551120456841787777778999999887210320003799500221043302578899999987657766
Q ss_pred CC----C--CCHHHHHHHHHHHHHHCCCCCCCCCCCCC------------------------------------------
Q ss_conf 33----4--52022347888875420354100022343------------------------------------------
Q gi|255764515|r 269 QG----E--NIEAFNSASKTVKCLQLANGAVYYDEEKH------------------------------------------ 300 (458)
Q Consensus 269 ~~----~--~~~~~~~~~~~~~l~q~~~~~~~~~~~~~------------------------------------------ 300 (458)
.+ + .-...+....+.+++|++.||.+......
T Consensus 489 ntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~ 568 (791)
T KOG1002 489 NTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVE 568 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66776315453078999999999974468400110211478766657244124688266567643147899999999987
Q ss_pred ------------------------CHH---------------------CCCCCCCCHHH----HHHCCCCCEEEEHHHHH
Q ss_conf ------------------------000---------------------13433332566----54124884034222367
Q gi|255764515|r 301 ------------------------WKE---------------------VHDEKIKALEV----IIEKANAAPIIVAYHFN 331 (458)
Q Consensus 301 ------------------------~~~---------------------~~~~k~~~l~~----il~~~~~~kviif~~~~ 331 (458)
..+ ..|.|+++|.+ +.+.....|-|||++|.
T Consensus 569 ~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFT 648 (791)
T KOG1002 569 SFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFT 648 (791)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 64114687786334444445452243213454435677763404132000157999999999999715525420498778
Q ss_pred HHHHHHHHCCC----------CCCCHHHHHHHHHHH-CCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 88866410002----------653344589987642-4588558998442211162200178599990899898686445
Q gi|255764515|r 332 SDLARLQKAFP----------QGRTLDKDPCTIQEW-NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQM 400 (458)
Q Consensus 332 ~~~~~i~~~~~----------~g~~~~~r~~~i~~f-~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~ 400 (458)
++++.|..+++ +++++..|...|+.| ++..+.|+++|.+|||+.|||+.|++ |.++||||||+..+|+
T Consensus 649 SmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASq-VFmmDPWWNpaVe~Qa 727 (791)
T KOG1002 649 SMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQ-VFMMDPWWNPAVEWQA 727 (791)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECHHCE-EEEECCCCCHHHHHHH
T ss_conf 899999988612673389963677867789999974128881799998605846863100002-5762664367777554
Q ss_pred HHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66662022020378775289999858996899999999999999999855
Q gi|255764515|r 401 IERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 401 ~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
.+|| |||||.+||.|.+|+.++|||++|.+++++|..++.+-++.
T Consensus 728 ~DRi-----HRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002 728 QDRI-----HRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred HHHH-----HHHCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4467-----76047565268886301228999999998886562433177
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=413.86 Aligned_cols=431 Identities=24% Similarity=0.349 Sum_probs=328.2
Q ss_pred CCCHHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 874789999999996-----79809995889986899999999999759---9949999160465699999999855888
Q gi|255764515|r 2 NLAPHQTKIVDWILD-----HKRCAIWASMGSGKTVSVLTALSYIHLWG---EKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~-----~~~~ll~~~~G~GKT~~al~~~~~l~~~~---~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
+|+|||..+++|+.. ..++++||+||+|||+++++++..+.... .++.|||||.+++. +|.+|+.+|.+
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~-nw~~e~~k~~~-- 414 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLS-NWKREFEKFAP-- 414 (866)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH-HHHHHHHHHCC--
T ss_conf 104889986699999877623687757523342199999998777764013578726871477776-79999986141--
Q ss_pred CCE-EEEEECCHHH----HHHH---HCC----CCCEEEECCCCHHHH--HHHCCCCCCCCEEECCCCCCCCCCCCCCHHH
Q ss_conf 815-9998589789----8887---307----798699806420233--4420001132204404531002465431156
Q gi|255764515|r 74 HMN-ISVITGTVKQ----RTKV---LKT----PAVLYVINFENLGWL--VQELKGTWPFATIVVDESTKLKSFRLRQGSK 139 (458)
Q Consensus 74 ~~~-~~~~~g~~~~----r~~~---~~~----~~~i~i~s~e~~~~~--~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~ 139 (458)
.++ +....|.... +... ... ..+++++||+.+... .........|+.+|+||||++||.. ++
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~----s~ 490 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ----SS 490 (866)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHH----HH
T ss_conf 21002321153112103699999998621330101899999999975020554223677698997887540477----89
Q ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHH-HCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 77776654305980799658402310010134677-51788877532778877736956403300002455554558999
Q gi|255764515|r 140 TARALAKPAWESERFIELTGTPSPNGLIDLWGQIW-FLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEI 218 (458)
Q Consensus 140 ~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~-~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 218 (458)
..+++. ..++.++++|||||++|++.|+|++++ |+.|+ .++.....|...|............ ..........+
T Consensus 491 ~~~~l~--~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~-~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~l 565 (866)
T COG0553 491 EGKALQ--FLKALNRLDLTGTPLENRLGELWSLLQEFLNPG-LLGTSFAIFTRLFEKPIQAEEDIGP--LEARELGIELL 565 (866)
T ss_pred HHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHCCHHHHHHHHCH--HHHHHHHHHHH
T ss_conf 999999--875543322899964560899999989985743-2662389999986016665432010--24567789999
Q ss_pred HHHHHHHHHHHHCCC--CC-CCCCCCEEEEEEECCHHHHHHHHHHHH---HHHHHCCC---CCC-------HHHHHHHHH
Q ss_conf 997424543320000--10-010011000345245368998889999---99851033---452-------022347888
Q gi|255764515|r 219 EAQLSDCCLSLDIAD--YQ-NIDKPILITKKVPLPQPVMKQYHKFQR---ELYCDLQG---ENI-------EAFNSASKT 282 (458)
Q Consensus 219 ~~~l~~~~~~~~~~~--~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~---~~~~~~~~---~~~-------~~~~~~~~~ 282 (458)
...+.++++++.+.+ .. .+|+.......++++..|.+.|..... .....+.. ... ...+.+..+
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 86432676540011167887486322200114763779999999986403378999988752101555546777787889
Q ss_pred HHHHHCCCCCCCCCCC-CCCHH--------------------CCC-CCCCCHHHHH-H--CCCCC--EEEEHHHHHHHHH
Q ss_conf 8754203541000223-43000--------------------134-3333256654-1--24884--0342223678886
Q gi|255764515|r 283 VKCLQLANGAVYYDEE-KHWKE--------------------VHD-EKIKALEVII-E--KANAA--PIIVAYHFNSDLA 335 (458)
Q Consensus 283 ~~l~q~~~~~~~~~~~-~~~~~--------------------~~~-~k~~~l~~il-~--~~~~~--kviif~~~~~~~~ 335 (458)
.+++++|++|..+... ..... ..+ .|...+.+++ . ..++. ++++|++|..+++
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~ 725 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLD 725 (866)
T ss_pred HHHHHHHCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH
T ss_conf 99998721864430432111212444300011024555578861530568999998889986277723488866605999
Q ss_pred HHHHC---------CCCCCC-HHHHHHHHHHHCCC-CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 64100---------026533-44589987642458-85589984422111622001785999908998986864456666
Q gi|255764515|r 336 RLQKA---------FPQGRT-LDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERI 404 (458)
Q Consensus 336 ~i~~~---------~~~g~~-~~~r~~~i~~f~~~-~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi 404 (458)
.+... ..+|++ ...|...++.|+++ ...|+++|++|||.||||+ +++++|++|++|||+...||++|+
T Consensus 726 il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~kagg~glnLt-~a~~vi~~d~~wNp~~e~Qa~dRa 804 (866)
T COG0553 726 LLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLT-GADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCC-CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999998558757987378752128899999864667757997530057661214-565246607763667999999878
Q ss_pred HCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2022020378775289999858996899999999999999999855
Q gi|255764515|r 405 GVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 405 ~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
||+||+++|.||+++++||+||+|++.+..|..+.+.++++
T Consensus 805 -----~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 805 -----HRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred -----HHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -----76078015999984113739999999998899899998601
No 15
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=0 Score=394.46 Aligned_cols=408 Identities=17% Similarity=0.201 Sum_probs=252.3
Q ss_pred CCCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 98747899999999967--9809995889986899999999999759-9949999160465699999999-855888815
Q gi|255764515|r 1 MNLAPHQTKIVDWILDH--KRCAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQ-RWSNFSHMN 76 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~--~~~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~-kf~~~~~~~ 76 (458)
..|.|||...+..+.+. +|.|||||||+|||++|..++..+...| .+++|||||+++. .||..|+. ||. +.
T Consensus 150 ~~l~pHQ~~ia~~v~~r~~PRvLLADEVGLGKTIEAGLIl~ell~rgra~RvLIvvP~~L~-~QW~~EL~~KF~----L~ 224 (955)
T PRK04914 150 AGLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGLIIHQQLLTGRAERVLIIVPETLQ-HQWLVEMLRRFN----LR 224 (955)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHCC----CC
T ss_conf 4656379999999971458848970588886899999999999974877779999277998-999999999839----98
Q ss_pred EEEEECCHHHHH--H--HHCCCCCEEEECCCCHHHHH--HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999858978988--8--73077986998064202334--42000113220440453100246543115677776654305
Q gi|255764515|r 77 ISVITGTVKQRT--K--VLKTPAVLYVINFENLGWLV--QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 77 ~~~~~g~~~~r~--~--~~~~~~~i~i~s~e~~~~~~--~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
..++....-... . ........+|+|++.++... .+.....+||+|||||||++.+... ..|+.++.+..++.+
T Consensus 225 f~i~D~~r~~~~~~~~~NpF~~~~~vI~Sld~l~~~~~~~e~l~~a~WDLVIVDEAHhL~~~~~-~~s~~y~lve~La~~ 303 (955)
T PRK04914 225 FSLFDEERCAEAQADADNPFETEQLVICSLDFLRKNKKRLEQALDAEWDLLVVDEAHHLVWSEE-APSREYQVVEQLAEV 303 (955)
T ss_pred CEEECCHHHHHHHCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHCCCCCEEEEHHHHHHCCCCC-CCCHHHHHHHHHHHH
T ss_conf 0995518888753357997545897998789960396789987338988899713445305887-888799999999851
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002---455554558999997424543
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAV---RYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~ 227 (458)
++++++|||||.+++..+.|+.+++|+|... ..+..|..+.............. .... ......+...+.+...
T Consensus 304 ~~~lLLLTATP~QlG~e~~Fa~L~LLDPdrF--~d~~~F~~e~~~y~~va~~v~~L~~~~~l~-~~~~~~l~~~l~e~~~ 380 (955)
T PRK04914 304 IPGVLLLTATPEQLGQESHFARLRLLDPDRF--HDYEAFVEEEQQYRPVADAVQALLDGEKLS-DDALNALGELLGEQDI 380 (955)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHH
T ss_conf 5976998479988986668988527794211--588889988875578999999863156688-8999999998644114
Q ss_pred ------------------------------------HHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ------------------------------------32000010010011000345245368998889999998510334
Q gi|255764515|r 228 ------------------------------------SLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGE 271 (458)
Q Consensus 228 ------------------------------------~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~ 271 (458)
+-.......+|.........+++........ ..
T Consensus 381 ~~l~~~~~~~~~~~~~~r~~li~~Lldr~gtgrvlfRntRa~v~gfp~R~l~~~~l~~~~~~~~~~~----~~------- 449 (955)
T PRK04914 381 EPLLQAINSDSEDAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPYPLPLPEQYQTAIR----KS------- 449 (955)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH----HH-------
T ss_conf 4789875214445699999999999862321577776567774316554531056787156787654----32-------
Q ss_pred CCHHHHHHHHHHHHH-HCCCCCC--CCCCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHH---------
Q ss_conf 520223478888754-2035410--0022343000134333325665412488403422236788866410---------
Q gi|255764515|r 272 NIEAFNSASKTVKCL-QLANGAV--YYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQK--------- 339 (458)
Q Consensus 272 ~~~~~~~~~~~~~l~-q~~~~~~--~~~~~~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~--------- 339 (458)
...... ++..... ............++|+++|.+.++...++|++|||.+..+...+.+
T Consensus 450 ---------~~~~~~~~l~~E~~~~~~~~~~~~~~~~D~rv~~Li~~Lk~~~~eKvLVFte~~~Ta~~L~~~Lr~~~Gi~ 520 (955)
T PRK04914 450 ---------LEARARDMLYPEQIYQEFEGDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAETALQLEQALREREGIR 520 (955)
T ss_pred ---------HHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf ---------32467875173566654565565542138899999999985779858999683899999999998755995
Q ss_pred --CCCCCCCHHHHHHHHHHHCCCC--CCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCC
Q ss_conf --0026533445899876424588--558998442211162200178599990899898686445666620220203787
Q gi|255764515|r 340 --AFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 415 (458)
Q Consensus 340 --~~~~g~~~~~r~~~i~~f~~~~--~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~ 415 (458)
.|++|.+..+|.+....|.+++ .+||||| .+||||+|||. |+++|+||+||||..++|||||+ ||+||+
T Consensus 521 ~avfh~gms~~ERdraaa~Fa~~e~gaqVLI~T-EagsEG~NLQF-~~~LVnyDLPWNP~rLEQRIGRl-----DRiGQ~ 593 (955)
T PRK04914 521 AAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS-EIGSEGRNFQF-ASHLVLFDLPFNPDLLEQRIGRL-----DRIGQK 593 (955)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEE-CCCCCCCCHHH-HHHHEECCCCCCHHHHHHHHHHH-----HHCCCC
T ss_conf 699709999899999999861767785199972-52124503777-43523525898765889985206-----542786
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 75289999858996899999999999999
Q gi|255764515|r 416 RAVFVYYLIAQNTIDELVLQRLRTKSTIQ 444 (458)
Q Consensus 416 ~~v~v~~li~~~tide~i~~~~~~K~~~~ 444 (458)
++|.||.-..+||..+.++.--.+-.+.+
T Consensus 594 ~dV~Ihvpy~~~s~q~~l~~wy~~gl~af 622 (955)
T PRK04914 594 HDIQIHVPYLEGTAQERLFRWYHEGLNAF 622 (955)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 75079862028988999999999888897
No 16
>KOG1016 consensus
Probab=100.00 E-value=0 Score=351.09 Aligned_cols=434 Identities=21% Similarity=0.303 Sum_probs=306.1
Q ss_pred CCHHHHHHHHHHHHC-------------CCEEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 747899999999967-------------98099958899868999999999997-5999499991604656999999998
Q gi|255764515|r 3 LAPHQTKIVDWILDH-------------KRCAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~-------------~~~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
|+|||.-++.||.+| .+|+||+.||+|||++.|.++..+.. ...+.+|+|+|-+.+.| |..||.+
T Consensus 255 ~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQN-WlsEfnm 333 (1387)
T KOG1016 255 LKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQN-WLSEFNM 333 (1387)
T ss_pred CCCCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCEEEEEEEHHHHHH-HHHHHHH
T ss_conf 581001757875031788876301467763200000256742588666677864276644899986078888-9998532
Q ss_pred HCCCC---------CCEEEEEECCHH---HHH---HHHCCCCCEEEECCCCHHHHHHHC---------------------
Q ss_conf 55888---------815999858978---988---873077986998064202334420---------------------
Q gi|255764515|r 69 WSNFS---------HMNISVITGTVK---QRT---KVLKTPAVLYVINFENLGWLVQEL--------------------- 112 (458)
Q Consensus 69 f~~~~---------~~~~~~~~g~~~---~r~---~~~~~~~~i~i~s~e~~~~~~~~~--------------------- 112 (458)
|.+.. ..++.++.+..+ .|. ..|-....|.++.||+++.+....
T Consensus 334 WiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~ 413 (1387)
T KOG1016 334 WIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKD 413 (1387)
T ss_pred HCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 06777666787653047898247304589999999987603978986189999998730233587420001467740377
Q ss_pred ----------------CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHC
Q ss_conf ----------------0011322044045310024654311567777665430598079965840231001013467751
Q gi|255764515|r 113 ----------------KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFL 176 (458)
Q Consensus 113 ----------------~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l 176 (458)
+..-..|+|||||+|++||.... .|.+.+++ ++++++.|||-|.+|++.|.|.|+.|+
T Consensus 414 d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~-iS~aLk~I-----rtrRRiVLTGYPLQNNLlEYwCMVDFV 487 (1387)
T KOG1016 414 DSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAE-ISMALKAI-----RTRRRIVLTGYPLQNNLLEYWCMVDFV 487 (1387)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCHHH-HHHHHHHH-----HHCEEEEEECCCCCCCHHHHHHHHEEC
T ss_conf 401468999999999843789976882588521332278-89999875-----431068874665531168775642001
Q ss_pred CCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEEECCHHH
Q ss_conf 78887753277887773695640330000245555--45589999974245433200001-0010011000345245368
Q gi|255764515|r 177 DKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAK--ETAQKEIEAQLSDCCLSLDIADY-QNIDKPILITKKVPLPQPV 253 (458)
Q Consensus 177 ~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~-~~l~~~~~~~~~v~l~~~~ 253 (458)
.|. .||.. .+|...+-+....+....+.-...+ ......+...+..++.++.-.-. .-+|.....+..|.++..|
T Consensus 488 RP~-yLGTR-~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQ 565 (1387)
T KOG1016 488 RPK-YLGTR-KEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQ 565 (1387)
T ss_pred CCC-CCCHH-HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEHHHHH
T ss_conf 533-23308-9998886456547845568806889999999999999999988502255766455531148888688899
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC---------------------------------------
Q ss_conf 99888999999851033452022347888875420354100---------------------------------------
Q gi|255764515|r 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVY--------------------------------------- 294 (458)
Q Consensus 254 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~--------------------------------------- 294 (458)
++.|+.+..+...++.......+|.+..-.-++.|.+||-.
T Consensus 566 R~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~ 645 (1387)
T KOG1016 566 RQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSN 645 (1387)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999999876401466344728999999875078189999998764200321127887542001237988788899
Q ss_pred ---------------------------CCCCCC------------------CHHCCCCCCCCHHHHHHCC--CCCEEEEH
Q ss_conf ---------------------------022343------------------0001343333256654124--88403422
Q gi|255764515|r 295 ---------------------------YDEEKH------------------WKEVHDEKIKALEVIIEKA--NAAPIIVA 327 (458)
Q Consensus 295 ---------------------------~~~~~~------------------~~~~~~~k~~~l~~il~~~--~~~kviif 327 (458)
++++.. .....++|+..+.+++++. -|.+++||
T Consensus 646 ~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~f 725 (1387)
T KOG1016 646 PSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIF 725 (1387)
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCEEEEE
T ss_conf 88755550445533567866676799722246651112157888876410111268986699876602201347458884
Q ss_pred HHHHHHHHHHHHCCC---------------------------CCCC-HHHHHHHHHHHCCCC-C-CEEEEEHHHCCCCCC
Q ss_conf 236788866410002---------------------------6533-445899876424588-5-589984422111622
Q gi|255764515|r 328 YHFNSDLARLQKAFP---------------------------QGRT-LDKDPCTIQEWNEGK-I-PLLFAHPASCGHGLN 377 (458)
Q Consensus 328 ~~~~~~~~~i~~~~~---------------------------~g~~-~~~r~~~i~~f~~~~-~-~vli~s~~~~~~Gln 377 (458)
++....++.|.+.++ +|++ ...|.+.|++||+.. + ..+++|+++|+.|+|
T Consensus 726 Sq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGin 805 (1387)
T KOG1016 726 SQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGIN 805 (1387)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCE
T ss_conf 02014889999997433166899988884154443023330468766524999998516887852443331025643202
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00178599990899898686445666620220203787752899998589968999999999999999998554
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 451 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~ 451 (458)
|-.| +.+|.+|..|||....||+.|+ +|+||+++|+||+||+.+|+|..||+++..|..+.+.|+|..
T Consensus 806 LIsa-nr~~ifda~wnpchdaqavcRv-----yrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~ 873 (1387)
T KOG1016 806 LISA-NRCIIFDACWNPCHDAQAVCRV-----YRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA 873 (1387)
T ss_pred EECC-CEEEEEEEECCCCCCCHHHHHH-----HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 3216-6079997305740132012556-----641574761687530222567878888876624303311013
No 17
>KOG1001 consensus
Probab=100.00 E-value=0 Score=340.25 Aligned_cols=403 Identities=17% Similarity=0.219 Sum_probs=277.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH
Q ss_conf 980999588998689999999999975--------999499991604656999999998558888159998589789888
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTK 89 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~ 89 (458)
.+|+++|+||+|||+++++++..-... ..+..|||||.+++. ||..|+++......+.+.+++| +....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~-qW~~elek~~~~~~l~v~v~~g--r~kd~ 229 (674)
T KOG1001 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLT-QWKTELEKVTEEDKLSIYVYHG--RTKDK 229 (674)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCHHHHH-HHHHHHHCCCCCCCEEEEEECC--CCCCC
T ss_conf 45067651014158999999996436771023302467436966658888-8888873358866469999616--42433
Q ss_pred HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCH
Q ss_conf 73077986998064202334420001132204404531002465431156777766543059807996584023100101
Q gi|255764515|r 90 VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDL 169 (458)
Q Consensus 90 ~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el 169 (458)
.-...++++++||..+.. ..+....|-.||+||||+++|..+ +.++++. ...+.++|.|||||++|+..|+
T Consensus 230 ~el~~~dvVltTy~il~~---~~l~~i~w~Riildea~~ikn~~t----q~~~a~~--~L~a~~RWcLtgtPiqn~~~~l 300 (674)
T KOG1001 230 SELNSYDVVLTTYDILKN---SPLVKIKWLRIVLDEAHTIKNKDT----QIFKAVC--QLDAKYRWCLTGTPIQNNLDEL 300 (674)
T ss_pred CHHCCCCEEEEEHHHHHC---CCCCCEEEEEEEECCCCCCCCCCH----HHHHHHE--EECCCEEEEECCCHHHHHHHHH
T ss_conf 134177669933788515---350012578887012002678526----7665513--5314222540478256649999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCCEE
Q ss_conf 34677517888775327788777369564033000024555545589999974245433200------001001001100
Q gi|255764515|r 170 WGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDI------ADYQNIDKPILI 243 (458)
Q Consensus 170 ~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------~~~~~l~~~~~~ 243 (458)
|+++.|+.-... ..+..|............ + ......+...+..++.++.+ .+...+|+....
T Consensus 301 ysl~~fl~~~p~--~~~~~~~~~i~~p~~~~~------~---~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~ 369 (674)
T KOG1001 301 YSLFKFLEIHPY--CDQNYFKLLIQDPDERNK------Y---KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVF 369 (674)
T ss_pred HHHHHHHHCCCC--HHHHHHHHHHCCHHHHHH------H---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 999987603873--036789887137153124------8---88999999999998741563232357533346862268
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------------
Q ss_conf 034524536899888999999851033------452022347888875420354100022343000--------------
Q gi|255764515|r 244 TKKVPLPQPVMKQYHKFQRELYCDLQG------ENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE-------------- 303 (458)
Q Consensus 244 ~~~v~l~~~~~~~y~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~-------------- 303 (458)
...+.........|.++.......+.. ......+.+..+.+++|.|+|+.+.-.......
T Consensus 370 ~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~ 449 (674)
T KOG1001 370 VTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIV 449 (674)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 64123307678899987641456787776524244217889999999998635546541133133221235257899999
Q ss_pred -C--------------------------------------------------------------------CCCCCCCHHH
Q ss_conf -1--------------------------------------------------------------------3433332566
Q gi|255764515|r 304 -V--------------------------------------------------------------------HDEKIKALEV 314 (458)
Q Consensus 304 -~--------------------------------------------------------------------~~~k~~~l~~ 314 (458)
. .+.|+..+..
T Consensus 450 ~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~ 529 (674)
T KOG1001 450 DLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLK 529 (674)
T ss_pred HHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHH
T ss_conf 97422654443454662443366448899987441655578783788888899886046653023321424566699999
Q ss_pred HHH--CCCC-CEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHC-CCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 541--2488-4034222367888664100----------026533445899876424-5885589984422111622001
Q gi|255764515|r 315 IIE--KANA-APIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 315 il~--~~~~-~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~-~~~~~vli~s~~~~~~GlnL~~ 380 (458)
++. +... .++++|++|...++.+.-. +.+..+...|...+..|+ ++...|+++|.+||+.||||+.
T Consensus 530 ~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~dg~~~~~~r~~s~~~f~~~~~~~vll~SlKag~~glNlt~ 609 (674)
T KOG1001 530 ILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTA 609 (674)
T ss_pred HHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHH
T ss_conf 98653578898625533689988885223443144401011256788998765315667635699999885001202246
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 785999908998986864456666202202037877528999985899689999999999999999985
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 449 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~ 449 (458)
|+ +++.+|++|||+.++||++|+ ||+||+++|.|++|+..+|+||+|++++.+|+.+....++
T Consensus 610 A~-~v~~~dpwwnp~~eeQaidR~-----hrigq~k~V~V~r~~ikdtvEer~l~iq~kK~~~~~~a~~ 672 (674)
T KOG1001 610 AS-HVLLMDPWWNPAVEEQAIDRA-----HRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HH-HHHHCCHHCCCHHHHHHHHHH-----HHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 67-888602221828899987789-----8856730589999751334699999988888877886416
No 18
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=100.00 E-value=0 Score=324.86 Aligned_cols=276 Identities=22% Similarity=0.312 Sum_probs=209.0
Q ss_pred HHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89999999996----79809995889986899999999999759--9949999160465699999999855888815999
Q gi|255764515|r 6 HQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWG--EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 6 ~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~--~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
||.+||+||.. +.+|+||||||+|||+|+|+++..+...+ .+++|||||++++. +|.+|+++|++ ...+.+
T Consensus 1 yQ~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~sl~~-~W~~Ei~~~~~--~~~~~~ 77 (295)
T pfam00176 1 YQLEGVNWLISLYNNGLGGILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPLSTLD-NWLNEFEKWAP--DLNIVV 77 (295)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH-HHHHHHHHHCC--CCCEEE
T ss_conf 978899999998727999897227875799999999999998388999889997578887-67889998679--970799
Q ss_pred EECCHHHHHHHH-----CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 858978988873-----077986998064202334420001132204404531002465431156777766543059807
Q gi|255764515|r 80 ITGTVKQRTKVL-----KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERF 154 (458)
Q Consensus 80 ~~g~~~~r~~~~-----~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~ 154 (458)
+.|+...+.... ...++++|+||+.+......+ ...+|++||+||||.+||+ .|++++++..+ +++++
T Consensus 78 ~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l-~~~~w~~vI~DEaH~iKN~----~s~~~~a~~~l--~~~~r 150 (295)
T pfam00176 78 YYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKDEL-HKANWRYVILDEGHRIKNA----KSKLSLALKSL--KTNNR 150 (295)
T ss_pred EEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH-HCCCCCEEEEECCCCCCCH----HHHHHHHHHHC--CCCCE
T ss_conf 98470768999886774168859993099999759998-4087658998762012587----88999999952--35818
Q ss_pred EEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9965840231001013467751788877532778877736956403300002--45555455899999742454332000
Q gi|255764515|r 155 IELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAV--RYTAKETAQKEIEAQLSDCCLSLDIA 232 (458)
Q Consensus 155 l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (458)
|+|||||++|++.|+|++++||+|+. ++ .+..|...|......+...... ...........+...+.++++++.+.
T Consensus 151 ~~LTGTPiqN~l~el~~ll~fl~p~~-~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~lRR~K~ 228 (295)
T pfam00176 151 LLLTGTPIQNNLAELWSLLNFLRPGI-FG-SFKEFDKWFVNPILNGGCSDATEKLEEAGLKLINRLHKILKPFLLRRLKK 228 (295)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCC-CC-CHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99868745588899999999958765-69-99999999723554277643205778889999999999988899861198
Q ss_pred CCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 010-010011000345245368998889999998510--33---45202234788887542035410
Q gi|255764515|r 233 DYQ-NIDKPILITKKVPLPQPVMKQYHKFQRELYCDL--QG---ENIEAFNSASKTVKCLQLANGAV 293 (458)
Q Consensus 233 ~~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~q~~~~~~ 293 (458)
+.. ++|+.....+.++|++.|.+.|+++........ .. ........+..+.+|+|+|+||.
T Consensus 229 dv~~~LP~k~e~~i~v~ls~~q~~~Y~~~l~~~~~~~~~~~~~~~~~~~~~il~~l~rLRq~C~HP~ 295 (295)
T pfam00176 229 DVEKSLPPKTEYVLFCNLSKLQKELYKKFLTSKDVKFINDGNGVKYGGKSRLLNLILELRKICNHPY 295 (295)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 7762489977999982899999999999998878999863037532439999999999999977999
No 19
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.8e-42 Score=272.95 Aligned_cols=426 Identities=15% Similarity=0.122 Sum_probs=240.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98747899999999967980999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
|+.|.||.+.++..+. ++.+++.++|+|||+.|+.++........+++|++||+-.+..|+.+.|.+++..|..++..+
T Consensus 14 ie~R~YQ~el~~~Al~-~NtiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l~i~~~~i~~l 92 (764)
T PRK13766 14 IEARLYQQLLAAKALK-GNTLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFLNIDPEKIVVL 92 (764)
T ss_pred CCCCHHHHHHHHHHHH-CCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 7653879999999985-898999599866899999999999974898899985888899999999999709995528999
Q ss_pred ECC--HHHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 589--7898887307798699806420233442-0001132204404531002465431156777766543059807996
Q gi|255764515|r 81 TGT--VKQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIEL 157 (458)
Q Consensus 81 ~g~--~~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~L 157 (458)
+|. +..|...|. ..+|+++|++.+.++... ......+.++|+||||+... ...+....+..... .+.+++++|
T Consensus 93 tG~~~~~~r~~~w~-~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~G--nh~Y~~I~~~y~~~-~~~PrILGL 168 (764)
T PRK13766 93 TGEISPEKRAALWE-KAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVG--NYAYVFIAERYHED-AKNPLVLGL 168 (764)
T ss_pred ECCCCHHHHHHHHC-CCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCC--CCCHHHHHHHHHHC-CCCCEEEEE
T ss_conf 88878276899860-799999990899999982986788822899974666667--76289999999853-778558850
Q ss_pred CCCCHHHHCCCHHHHHHHCCCCCC-CCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 584023100101346775178887-7532778877736956403300002455554558999997424543320000100
Q gi|255764515|r 158 TGTPSPNGLIDLWGQIWFLDKGKR-LGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQN 236 (458)
Q Consensus 158 TgTPi~n~~~el~~ll~~l~~~~~-l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 236 (458)
||||..+ ...+-..+.-|+-... .......-...|.............. .........+...+.+...........
T Consensus 169 TASPGs~-~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~-~~~~~i~~~l~~~l~~~l~~L~~~~~~- 245 (764)
T PRK13766 169 TASPGSD-EEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELP-EELKEIRDLLNEALKDRLKKLKELGVI- 245 (764)
T ss_pred CCCCCCC-HHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHCCCE-
T ss_conf 3688764-4899999986598728961444434454335673279980797-899999999999999999999966970-
Q ss_pred CCCCCEEEEEEECCHHHHH----------------HHH------HHHH--HHHHHCCCCCCHHH-HHHHHHH--------
Q ss_conf 1001100034524536899----------------888------9999--99851033452022-3478888--------
Q gi|255764515|r 237 IDKPILITKKVPLPQPVMK----------------QYH------KFQR--ELYCDLQGENIEAF-NSASKTV-------- 283 (458)
Q Consensus 237 l~~~~~~~~~v~l~~~~~~----------------~y~------~~~~--~~~~~~~~~~~~~~-~~~~~~~-------- 283 (458)
.. ....++..... .|+ +..+ .+..-+.......+ +.+..+.
T Consensus 246 --~~----~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~ 319 (764)
T PRK13766 246 --VS----ISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGS 319 (764)
T ss_pred --EC----CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf --04----555468999999999999988646879999999999999999999999985189999999999973013332
Q ss_pred -HHHHCCCCCCCCC--CCCCCHHCCCCCCCCHHHHHHC----CCCCEEEEHHHHHHHHHHHHHCC----------C----
Q ss_conf -7542035410002--2343000134333325665412----48840342223678886641000----------2----
Q gi|255764515|r 284 -KCLQLANGAVYYD--EEKHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAF----------P---- 342 (458)
Q Consensus 284 -~l~q~~~~~~~~~--~~~~~~~~~~~k~~~l~~il~~----~~~~kviif~~~~~~~~~i~~~~----------~---- 342 (458)
...++..++.... ..........+|++.|.+++.+ .++.++|||+++..+...|...+ .
T Consensus 320 k~~k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~ik~~~fVGq~s 399 (764)
T PRK13766 320 KASKRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGIKAIRFVGQAS 399 (764)
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 67899875877899999876446789379999999999972699980899927679999999998658997228983689
Q ss_pred ----CCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCE
Q ss_conf ----6533445899876424588558998442211162200178599990899898686445666620220203787752
Q gi|255764515|r 343 ----QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 418 (458)
Q Consensus 343 ----~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v 418 (458)
+|++..++.+++++|++|++++||+| .+|.||||+. +||.||+||+.-|+-+..|+.|| .|.+++-
T Consensus 400 ~~~~kGmsqkeQ~evL~~FR~Ge~NvLVAT-SV~EEGLDIP-~cdLVI~Yd~v~S~IR~IQR~GR--------TGR~r~G 469 (764)
T PRK13766 400 RDGDKGMSQKEQIETLDRFRAGEYNVLVAT-SVAEEGLDIP-SVDLVIFYEPVPSEIRSIQRKGR--------TGRQRGG 469 (764)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCCC-CCCEEEEECCCCCHHHHHHHCCC--------CCCCCCC
T ss_conf 878889898999999999857998889876-7664488887-78889993799619999997466--------5677897
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999858996899999999999999999855
Q gi|255764515|r 419 FVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 419 ~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
.|+.|+++||.||.-+..-.+|..-+-..+..
T Consensus 470 ~v~vLi~~gt~de~~~~~~~~kek~m~~~l~~ 501 (764)
T PRK13766 470 RVVVLIAKGTRDEAYYWSSRRKEKKMKEILKN 501 (764)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999956862677888511206899999999
No 20
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-36 Score=240.14 Aligned_cols=427 Identities=16% Similarity=0.156 Sum_probs=240.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 987478999999999679809995889986899999999-9997599949999160465699999999855888815999
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS-YIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
++-|.||...++..+.. ++|++.++|+|||++|...+. .|...+. ++|+++|+..+..|...-+.+++..|.-++..
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred CCHHHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHHCCCHHHEEE
T ss_conf 25889999999998644-83899528750799999999999874588-48996589517999999999985898433231
Q ss_pred EECC--HHHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8589--7898887307798699806420233442-000113220440453100246543115677776654305980799
Q gi|255764515|r 80 ITGT--VKQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 80 ~~g~--~~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~ 156 (458)
++|. +.+|...|. ...|++.|.+.+.++... ..+...+.++|+||||+- .++..+...++...+. .+.+++++
T Consensus 92 ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA--vGnyAYv~Va~~y~~~-~k~~~ilg 167 (542)
T COG1111 92 LTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA--VGNYAYVFVAKEYLRS-AKNPLILG 167 (542)
T ss_pred ECCCCCHHHHHHHHH-HCCEEEECCHHHHHHHHCCCCCHHHCEEEEECHHHHC--CCCCHHHHHHHHHHHH-CCCCEEEE
T ss_conf 117778688999875-1778995638777687617667678058986235541--3760699999999982-56843798
Q ss_pred ECCCCHHHHCCCHHHHHHHCCCCCCCC-CCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_conf 658402310010134677517888775-327788777369564033000024555545589999974245433-------
Q gi|255764515|r 157 LTGTPSPNGLIDLWGQIWFLDKGKRLG-RVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS------- 228 (458)
Q Consensus 157 LTgTPi~n~~~el~~ll~~l~~~~~l~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------- 228 (458)
|||||-. ++..+-..+.-|+-....- .....=+..|........- .+ .......+++..+.+..-.
T Consensus 168 LTASPGs-~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~i--kV---~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 168 LTASPGS-DLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWI--KV---DLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred EECCCCC-CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCEEEEE--EC---CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7238999-879999999837954289845788517775140424899--63---68589999999999999999999997
Q ss_pred ---------HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHH---H--HHHHHCCCCCCHHH-HHHHHHHH---------
Q ss_conf ---------200001001001100034524536899888999---9--99851033452022-34788887---------
Q gi|255764515|r 229 ---------LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQ---R--ELYCDLQGENIEAF-NSASKTVK--------- 284 (458)
Q Consensus 229 ---------~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~---~--~~~~~~~~~~~~~~-~~~~~~~~--------- 284 (458)
....+...+-........-+ +..-.+.+.-+. + .+..-+....+..+ +.+.++..
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNE-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 69532357310768999999899863576-17888999999999888899999985086999999999998750352077
Q ss_pred HHHCCCCCCCCC-----CCCCCHHCCCCCCCCHHHHHH----CCCCCEEEEHHHHHHHHHHHHHC-----------CC--
Q ss_conf 542035410002-----234300013433332566541----24884034222367888664100-----------02--
Q gi|255764515|r 285 CLQLANGAVYYD-----EEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKA-----------FP-- 342 (458)
Q Consensus 285 l~q~~~~~~~~~-----~~~~~~~~~~~k~~~l~~il~----~~~~~kviif~~~~~~~~~i~~~-----------~~-- 342 (458)
...+...+.... ..........+|++.+.+++. ...+.++|||++|..+.+.|... |.
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQ 400 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQ 400 (542)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 89875382047999999974003688961899999999997238985599996147589999999985287520688611
Q ss_pred ------CCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCC
Q ss_conf ------65334458998764245885589984422111622001785999908998986864456666202202037877
Q gi|255764515|r 343 ------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 416 (458)
Q Consensus 343 ------~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~ 416 (458)
.|++..++.++|++|++|+++||+++ ..|.||||+. .++.|||||+.-|+-+..|+.||- |-++
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaT-SVgEEGLDIp-~vDlVifYEpvpSeIR~IQR~GRT--------GR~r 470 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVAT-SVGEEGLDIP-EVDLVIFYEPVPSEIRSIQRKGRT--------GRKR 470 (542)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCC-CCCEEEEECCCCHHHHHHHHHCCC--------CCCC
T ss_conf 45455666588899999999865785189981-2322467887-656799956885788999860744--------5577
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5289999858996899999999999999999855
Q gi|255764515|r 417 AVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 450 (458)
Q Consensus 417 ~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~ 450 (458)
.-.||.|+++||.|+.-+..-.+|...+...+..
T Consensus 471 ~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~ 504 (542)
T COG1111 471 KGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRG 504 (542)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9749999965862789999999999999999998
No 21
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6e-35 Score=229.95 Aligned_cols=349 Identities=17% Similarity=0.199 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9874789999999996----798099958899868999999999997599949999160465699999999855888815
Q gi|255764515|r 1 MNLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
.+|+|||.+|++.+.. .+++++..++|+|||+.++.++..+. .++|||||...+..||.+.+.++...+ -.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~ 109 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKFLLLN-DE 109 (442)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHHCCCC-CC
T ss_conf 8885999999999996222578679996799988999999999826----988999782999999999999734886-76
Q ss_pred EEEEECCHHHHHHHHCCCCCEEEECCCCHHHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-E
Q ss_conf 999858978988873077986998064202334-42000113220440453100246543115677776654305980-7
Q gi|255764515|r 77 ISVITGTVKQRTKVLKTPAVLYVINFENLGWLV-QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER-F 154 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~-~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~-~ 154 (458)
...+.|..+.-. . ..|.+.||+++.... -.......|++||+||||++-++ .++.+.... .+.+ +
T Consensus 110 ~g~~~~~~~~~~----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-------~~~~~~~~~-~~~~~~ 176 (442)
T COG1061 110 IGIYGGGEKELE----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-------SYRRILELL-SAAYPR 176 (442)
T ss_pred CCEECCCCCCCC----C-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHH-HCCCEE
T ss_conf 603368723357----7-748999838976415555403566675999752457847-------799999975-103104
Q ss_pred EEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 996584023100101346775178887753277887773695640330000245555455899999742454332000--
Q gi|255764515|r 155 IELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIA-- 232 (458)
Q Consensus 155 l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-- 232 (458)
++|||||.......+.-+...+.| ........
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~----------------------------------------------~vy~~~~~~l 210 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGP----------------------------------------------IVYEVSLKEL 210 (442)
T ss_pred EEEECCCCCCCCCCHHHHHHHCCC----------------------------------------------EEEECCHHHH
T ss_conf 677148724487752487740575----------------------------------------------5673358998
Q ss_pred -CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf -0100100110003452453689988899999985103345202234788887542035410002234300013433332
Q gi|255764515|r 233 -DYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 311 (458)
Q Consensus 233 -~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~ 311 (458)
+..-+.+.......+.++......|.+........+..... ..... ...........++..
T Consensus 211 i~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~~~~~ 272 (442)
T COG1061 211 IDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----LRAEN-------------EARRIAIASERKIAA 272 (442)
T ss_pred HHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCC-----HHHHH-------------HHHHHHHHHHHHHHH
T ss_conf 337875774999986236628777403155555555543100-----13456-------------777776642899999
Q ss_pred HHHHHHCC-CCCEEEEHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf 56654124-8840342223678886641000---------2653344589987642458855899844221116220017
Q gi|255764515|r 312 LEVIIEKA-NAAPIIVAYHFNSDLARLQKAF---------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 381 (458)
Q Consensus 312 l~~il~~~-~~~kviif~~~~~~~~~i~~~~---------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a 381 (458)
+..++... .+.+++||+..+.....+...+ .+.++..+|..+++.|..++.++++.+ +.+.||+|+..+
T Consensus 273 ~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~-~vl~EGvDiP~~ 351 (442)
T COG1061 273 VRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTV-KVLDEGVDIPDA 351 (442)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EEECCCCCCCCC
T ss_conf 9999875326886699975779999999986267742466578998899999999870895299996-141266578887
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCC--EEEEEEEECCCHHHHHHHHH
Q ss_conf 859999089989868644566662022020378775--28999985899689999999
Q gi|255764515|r 382 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYLIAQNTIDELVLQRL 437 (458)
Q Consensus 382 ~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~--v~v~~li~~~tide~i~~~~ 437 (458)
+++|...++=|+..+.|+.||+.|. ...+.. +..|-++..++.+..+....
T Consensus 352 -~~~i~~~~t~S~~~~~Q~lGR~LR~----~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 352 -DVLIILRPTGSRRLFIQRLGRGLRP----AEGKEDTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred -CEEEEECCCCCHHHHHHHHHHHHCC----CCCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf -5799977998799999996166347----8899965999996456764433266664
No 22
>KOG0354 consensus
Probab=100.00 E-value=1.1e-32 Score=216.15 Aligned_cols=418 Identities=15% Similarity=0.124 Sum_probs=221.3
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 987478999999999679809995889986899999999-9997599949999160465699999999855888815999
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS-YIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
++||+||.+.+...+ ..+.+++.++|+|||+.|..++. ++.-....+++..||+..+.+|-.+++..+.. | ..+..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~-~-~~~T~ 137 (746)
T KOG0354 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLI-P-YSVTG 137 (746)
T ss_pred CCCCHHHHHHHHHHH-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCC-C-CCCEE
T ss_conf 656078999867862-68769995359986104799999997237764389960771178888988762067-6-01045
Q ss_pred EECC---HHHHHHHHCCCCCEEEECCCCHHHHHHH-CCCC-CCCCEEECCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 8589---7898887307798699806420233442-0001-13220440453100-246543115677776654305980
Q gi|255764515|r 80 ITGT---VKQRTKVLKTPAVLYVINFENLGWLVQE-LKGT-WPFATIVVDESTKL-KSFRLRQGSKTARALAKPAWESER 153 (458)
Q Consensus 80 ~~g~---~~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~-~~~~~iIiDEaH~l-kn~~~~~~s~~~~~l~~~~~~~~~ 153 (458)
..|+ ...+..++ ...++++.|.+.+.+..+. .... -.|.++|+||||+- ||. .++...+..........+
T Consensus 138 ~l~~~~~~~~r~~i~-~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~---~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354 138 QLGDTVPRSNRGEIV-ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNH---PYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred ECCCCCCCCCHHHHH-CCCCEEEECHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCC---CHHHHHHHHHHHHHCCCC
T ss_conf 505756887624531-0263589672763433254334545517999972224455566---179999999986514661
Q ss_pred EEEECCCCHHHHCCCH----HHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7996584023100101----346775178887753277887773695640330000245555455899999742454332
Q gi|255764515|r 154 FIELTGTPSPNGLIDL----WGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSL 229 (458)
Q Consensus 154 ~l~LTgTPi~n~~~el----~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (458)
+++|||||- ++..+. .+|+.-|+-. ...+....|....+.......+... .......+...+.+.+...
T Consensus 214 ILgLTASpG-~~~~~v~~~I~~L~asldvr-----~~ssi~~~y~~lr~~~~i~v~~~~~-~~~~~~~f~~~i~p~l~~l 286 (746)
T KOG0354 214 ILGLTASPG-SKLEQVQNVIDNLCASLDVR-----TESSIKSNYEELREHVQIPVDLSLC-ERDIEDPFGMIIEPLLQQL 286 (746)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHEECCCC-----HHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 799855888-45899999998520332555-----0445654189872467524758876-4113436999999999999
Q ss_pred HCCCCCCCCCCC-EEEE---------EEECCHHHH---HHHHHHH--HHHH-HH-CC-------CCCCHHHHHHHH----
Q ss_conf 000010010011-0003---------452453689---9888999--9998-51-03-------345202234788----
Q gi|255764515|r 230 DIADYQNIDKPI-LITK---------KVPLPQPVM---KQYHKFQ--RELY-CD-LQ-------GENIEAFNSASK---- 281 (458)
Q Consensus 230 ~~~~~~~l~~~~-~~~~---------~v~l~~~~~---~~y~~~~--~~~~-~~-~~-------~~~~~~~~~~~~---- 281 (458)
....+..+-... .... .-.....+. .++.-.. ..+. .. +. .++......+.+
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~ 366 (746)
T KOG0354 287 QEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKL 366 (746)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 86385410243334444043300222368874320367899999878888763234037777655543000004678898
Q ss_pred ---------HHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHH----CCCCCEEEEHHHHHHHHHHHHHCCC------
Q ss_conf ---------887542035410002234300013433332566541----2488403422236788866410002------
Q gi|255764515|r 282 ---------TVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIE----KANAAPIIVAYHFNSDLARLQKAFP------ 342 (458)
Q Consensus 282 ---------~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~----~~~~~kviif~~~~~~~~~i~~~~~------ 342 (458)
..-+.+...+ ........++|+..+.+++. ......+|||+.+...+..|...+.
T Consensus 367 ~~e~~~~~~~~~~m~~~~~------l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354 367 ELEARLIRNFTENMNELEH------LSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred HHCCHHHHHHHHHHHHHHH------HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCC
T ss_conf 7422106778898876443------2027876684699999999998605988507999732889999999997540135
Q ss_pred ---------------CCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf ---------------65334458998764245885589984422111622001785999908998986864456666202
Q gi|255764515|r 343 ---------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT 407 (458)
Q Consensus 343 ---------------~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~ 407 (458)
.|++..++.+.++.|++|+.+|||++ ..|.||||.. .|+.||-||..-||-.+.|+.||.
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVAT-SV~EEGLDI~-ec~lVIcYd~~snpIrmIQrrGRg--- 515 (746)
T KOG0354 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVAT-SVAEEGLDIG-ECNLVICYDYSSNPIRMVQRRGRG--- 515 (746)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-CCHHCCCCCC-CCCEEEEECCCCCHHHHHHHHCCC---
T ss_conf 44021560354454444578999999999857980279981-0100467742-112899965776688999986310---
Q ss_pred CCHHCCCCCCEEEEEEEECCCHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 2020378775289999858996899999-9999999999998554
Q gi|255764515|r 408 RQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDLLLNAL 451 (458)
Q Consensus 408 r~hR~Gq~~~v~v~~li~~~tide~i~~-~~~~K~~~~~~~~~~~ 451 (458)
| ++.=.++.+.+ +.++.-++ ....|..+++..+..+
T Consensus 516 R------a~ns~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~~~ 552 (746)
T KOG0354 516 R------ARNSKCVLLTT--GSEVIEFERNNLAKEKLMNQTISKI 552 (746)
T ss_pred C------CCCCEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1------01876999972--5168899888876999999999888
No 23
>KOG0298 consensus
Probab=100.00 E-value=1.7e-33 Score=221.10 Aligned_cols=151 Identities=20% Similarity=0.177 Sum_probs=109.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHH------------HHHHCC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 9809995889986899999999------------999759-----99499991604656999999998558888159998
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALS------------YIHLWG-----EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~------------~l~~~~-----~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.++.++++||+|||...++... .+...+ .+.+|||||.+++. ||-.||.+|.... +++..+
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~-QW~~EI~kH~~~~-lKv~~Y 452 (1394)
T KOG0298 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILM-QWFEEIHKHISSL-LKVLLY 452 (1394)
T ss_pred CCEEEHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEECCCEEEECCHHHHH-HHHHHHHHHCCCC-CEEEEE
T ss_conf 41230544410104788888774245433155458776156422037559988378799-9999999755665-227877
Q ss_pred ECCHHHHH--HHHCCCCCEEEECCCCHHHHHHHC---------------------CCCCCCCEEECCCCCCCCCCCCCCH
Q ss_conf 58978988--873077986998064202334420---------------------0011322044045310024654311
Q gi|255764515|r 81 TGTVKQRT--KVLKTPAVLYVINFENLGWLVQEL---------------------KGTWPFATIVVDESTKLKSFRLRQG 137 (458)
Q Consensus 81 ~g~~~~r~--~~~~~~~~i~i~s~e~~~~~~~~~---------------------~~~~~~~~iIiDEaH~lkn~~~~~~ 137 (458)
.|-.+.-. ..-...++|++|||+.++...-+- +....|..||+|||+.+.+ ..
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves----ss 528 (1394)
T KOG0298 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES----SS 528 (1394)
T ss_pred ECHHHHCCCCCHHHHCCCEEEEEHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC----HH
T ss_conf 51544156672244246779854588776752031248726664036777999835877789885538876211----37
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCC
Q ss_conf 5677776654305980799658402310010134677517
Q gi|255764515|r 138 SKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLD 177 (458)
Q Consensus 138 s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~ 177 (458)
|..++.+.++ .+.++|+.||||+++ +.|+|+++.||.
T Consensus 529 S~~a~M~~rL--~~in~W~VTGTPiq~-Iddl~~Ll~fLk 565 (1394)
T KOG0298 529 SAAAEMVRRL--HAINRWCVTGTPIQK-IDDLFPLLEFLK 565 (1394)
T ss_pred HHHHHHHHHH--HHHCEEEECCCCHHH-HHHHHHHHHHHC
T ss_conf 7999999975--330244504870332-451688999856
No 24
>KOG0383 consensus
Probab=100.00 E-value=2.8e-36 Score=238.04 Aligned_cols=347 Identities=20% Similarity=0.252 Sum_probs=243.6
Q ss_pred CCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 74789999999996----798099958899868999999999997599--949999160465699999999855888815
Q gi|255764515|r 3 LAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWGE--KSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 3 L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~~--~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
|.|||.++++|+.- ...+++||+||+|||++++.+...+...+. .+.|+++|.+.+. .|.+|++.|.+ ...
T Consensus 296 L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~-nwe~e~~~wap--~~~ 372 (696)
T KOG0383 296 LHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIV-NWEREFELWAP--SFY 372 (696)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCEEEEEEEEEECCCCCCCCCCCEEECCCCCCC-CCCCCHHCCCC--CCC
T ss_conf 440156666553142236888655310158711457888852134557889954656676645-78874100588--753
Q ss_pred EEEEECCHHHHHHHHCC------------------------CCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99985897898887307------------------------798699806420233442000113220440453100246
Q gi|255764515|r 77 ISVITGTVKQRTKVLKT------------------------PAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSF 132 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~------------------------~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~ 132 (458)
+..+.|+.+.|.-+... ...+..++|+.... ...+...+.|.++|+||+|++||.
T Consensus 373 vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~-~~~il~~v~w~~livde~~rlkn~ 451 (696)
T KOG0383 373 VVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI-DQSILFSVQWGLLIVDEAHRLKNK 451 (696)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHCCC-CHHHHHHHHCCEEEEECHHHCCCC
T ss_conf 3368887122456624433455420003775332121321135667886554026-788774310213675000102564
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHH
Q ss_conf 54311567777665430598079965840231001013467751788877532778877736956403300002455554
Q gi|255764515|r 133 RLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKE 212 (458)
Q Consensus 133 ~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (458)
.|++++.+.. ....++++|||||.+|++.+||++|+|+.|+..-. ...|.+++.+ ....
T Consensus 452 ----~s~~f~~l~~--~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~--~~~f~e~~~d-------------~~~~ 510 (696)
T KOG0383 452 ----QSKRFRVLTA--YPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNS--LEWFLEEFHD-------------ISCE 510 (696)
T ss_pred ----HHHHHHHCCC--CCCCHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC--HHHHHHHCCH-------------HHHH
T ss_conf ----4444432355--53200000468820002677521136567011352--2333221001-------------3489
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 558999997424543320000100-1001100034524536899888999999851033452022347888875420354
Q gi|255764515|r 213 TAQKEIEAQLSDCCLSLDIADYQN-IDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG 291 (458)
Q Consensus 213 ~~~~~l~~~l~~~~~~~~~~~~~~-l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~ 291 (458)
...+.+...+.+++.++.+.|+.+ +|...+....+.+++-|.+.|.+.....+.-+.. ..........++.+++.|+|
T Consensus 511 ~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel~K~~~h 589 (696)
T KOG0383 511 EQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVMELRKQCNH 589 (696)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHH-CCHHHHHHHHHHHHHHHHCC
T ss_conf 99976354557345635406541689865215788733789999999987277277752-00568999999999986347
Q ss_pred CCCCCCCCCCHH----------CCCCCCCCHHHHHH--CCCCCEEEEHHHHHHHHHHHHH---------CCCCCCCHHHH
Q ss_conf 100022343000----------13433332566541--2488403422236788866410---------00265334458
Q gi|255764515|r 292 AVYYDEEKHWKE----------VHDEKIKALEVIIE--KANAAPIIVAYHFNSDLARLQK---------AFPQGRTLDKD 350 (458)
Q Consensus 292 ~~~~~~~~~~~~----------~~~~k~~~l~~il~--~~~~~kviif~~~~~~~~~i~~---------~~~~g~~~~~r 350 (458)
|..++....... ..++|+..|..++. ...|++|+||+++..+++.+.. ++-|+.+...|
T Consensus 590 py~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~r 669 (696)
T KOG0383 590 PYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPER 669 (696)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHH
T ss_conf 55376312012006889999999877899999999987734324689999999998868887406741011487666056
Q ss_pred HHHHHHHCCCC--CCEEEEEHHHCCCC
Q ss_conf 99876424588--55899844221116
Q gi|255764515|r 351 PCTIQEWNEGK--IPLLFAHPASCGHG 375 (458)
Q Consensus 351 ~~~i~~f~~~~--~~vli~s~~~~~~G 375 (458)
+.+|++||.+. --+++.|++|||.|
T Consensus 670 q~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383 670 QAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 652256679975412888511456689
No 25
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=100.00 E-value=1.6e-34 Score=227.34 Aligned_cols=335 Identities=19% Similarity=0.279 Sum_probs=236.7
Q ss_pred CCCHHHHHHHH-HHHHCCC---EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 87478999999-9996798---0999588998689999999999975999499991604656999999998558888159
Q gi|255764515|r 2 NLAPHQTKIVD-WILDHKR---CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 2 ~L~p~Q~~~v~-~~~~~~~---~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
.|||||+..+. +|-+||| |+|..|+|.||||.-+.|+... .+++||+|..++-..||...|..|.......+
T Consensus 269 ~~RPYQEKSLrsKMFGNGRARSGiIVLPCGAGKsLVGvTAACTv----kKs~lVLctS~VSV~QW~~QFk~WSti~d~~I 344 (756)
T TIGR00603 269 VLRPYQEKSLRSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSVLVLCTSAVSVEQWKQQFKLWSTIDDSQI 344 (756)
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHEEE----EEEEEEEECCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 88975111044456678611055177677888311225442023----10078972671008899988752268873551
Q ss_pred EEEECCHHHHHHHHCCCCCEEEECCCCHHHHH---------HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99858978988873077986998064202334---------420001132204404531002465431156777766543
Q gi|255764515|r 78 SVITGTVKQRTKVLKTPAVLYVINFENLGWLV---------QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 78 ~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~---------~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
..+|.+.|++ +.+...|+|+||.++.+-. =+++....|++||+||.|.+ .++.+|......
T Consensus 345 crFTSD~Ke~---~~~~~gv~vsTYsMva~t~kRS~es~k~m~~l~~rEWGl~~LDEVHvv-------PA~mFRrVlt~~ 414 (756)
T TIGR00603 345 CRFTSDAKEK---FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVV-------PAAMFRRVLTIV 414 (756)
T ss_pred CCCCCCCCCC---CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-------CCCCCCCHHHHH
T ss_conf 1025213576---266533588733000247543188999999970687317986110103-------500166010144
Q ss_pred HCCCEEEEECCCCHH--HHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 059807996584023--100101346775178887753277887773695640330000245555455899999742454
Q gi|255764515|r 149 WESERFIELTGTPSP--NGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCC 226 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~--n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (458)
+|--+|+||||-+- ..+.| ||||-.. .-|.++|++..+.|. +
T Consensus 415 -~aHcKLGLTATLvREDdKI~D----LNFLIGP-------KLYEANWleL~~~Gf------------------------I 458 (756)
T TIGR00603 415 -QAHCKLGLTATLVREDDKIQD----LNFLIGP-------KLYEANWLELQKKGF------------------------I 458 (756)
T ss_pred -HHHHCCCCCEEEECCCCCCCC----CCCCCCC-------HHHHHHHHHHHCCCE------------------------E
T ss_conf -332001432110011143031----2213572-------134532698820883------------------------6
Q ss_pred HHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 33200001001001100034524536899888999999851033452022347888875420354100022343000134
Q gi|255764515|r 227 LSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 306 (458)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~ 306 (458)
-++ .|. .++++|+++-.+.|-.... .++... +| ..+-
T Consensus 459 A~V---qCA--------EVWCPMt~EFY~EYL~~~~------~~Kr~L-------------------LY-------~MNP 495 (756)
T TIGR00603 459 ANV---QCA--------EVWCPMTPEFYREYLREKS------RKKRML-------------------LY-------VMNP 495 (756)
T ss_pred EEE---EEC--------CCCCCCCHHHHHHHHHHHC------CCCCEE-------------------EE-------ECCC
T ss_conf 887---412--------1017887778999985511------244303-------------------12-------0386
Q ss_pred CCCCCHHHHH---HCCCCCEEEEHHHHHHHHHHHH-----HCCCCCCCHHHHHHHHHHHC-CCCCCEEEEEHHHCCCCCC
Q ss_conf 3333256654---1248840342223678886641-----00026533445899876424-5885589984422111622
Q gi|255764515|r 307 EKIKALEVII---EKANAAPIIVAYHFNSDLARLQ-----KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 307 ~k~~~l~~il---~~~~~~kviif~~~~~~~~~i~-----~~~~~g~~~~~r~~~i~~f~-~~~~~vli~s~~~~~~Gln 377 (458)
.|+++=.-++ |+..|.|||||+..+--+.... .-|.|+++..||..+++.|+ |++++-+++| ++|-+.||
T Consensus 496 ~KFrACqFLI~fHE~~RgDKIIVFsDNVfAL~~YA~kl~KpfIYGpTsq~ER~~IL~nF~~n~~vnTIF~S-KVGDtSiD 574 (756)
T TIGR00603 496 NKFRACQFLIRFHERQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFKHNPKVNTIFLS-KVGDTSID 574 (756)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEE-EECCCCCC
T ss_conf 44357789888854148885899424478999999873896540798713799998621558864568984-30277514
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHHHHHHCCCCHHCC-----CC-CCEEEEEEEECCCHHH
Q ss_conf 001785999908998-986864456666202202037-----87-7528999985899689
Q gi|255764515|r 378 LQYGGNILVFFSLWW-DLEEHQQMIERIGVTRQRQAG-----FK-RAVFVYYLIAQNTIDE 431 (458)
Q Consensus 378 L~~a~~~iI~~~~~w-n~~~~~Q~~gRi~~~r~hR~G-----q~-~~v~v~~li~~~tide 431 (458)
|+.| |++|-.+.|. |-.-.-||-|||.|..-.-.+ .+ =+-.-|=||++||.|-
T Consensus 575 lPEA-nvlIQiSSH~GSRRQEAQRLGRILRAK~~~~~r~aggkE~YNAFFYSLVS~DTqEm 634 (756)
T TIGR00603 575 LPEA-NVLIQISSHYGSRRQEAQRLGRILRAKKKSDARMAGGKEEYNAFFYSLVSKDTQEM 634 (756)
T ss_pred CCCC-CEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCEEE
T ss_conf 2214-26776532677403687641320167875133313776442201210134451465
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=7.4e-26 Score=174.89 Aligned_cols=322 Identities=18% Similarity=0.242 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHH-----HCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996798099958899868999-99999999-----759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIH-----LWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~-----~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
++.|-|..++-.+++++..++.+++|+|||+.- |-++..+. ..+...+|||||+.-+..|-.+++.++.....+
T Consensus 25 ~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l~~~~~i 104 (417)
T PRK11192 25 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHL 104 (417)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999997799889989998679999999999998752103689964999947199999999999986400573
Q ss_pred EEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 599985897--8988873077986998064202334420-0011322044045310024654311567777665430598
Q gi|255764515|r 76 NISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESE 152 (458)
Q Consensus 76 ~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~ 152 (458)
++..+.|.. ......+....+|+|.|...+....... .....-.++|+||||++-+.+- ......+.......+
T Consensus 105 ~~~~i~Gg~~~~~q~~~l~~~~dIlV~TPgRL~~~l~~~~~~l~~l~~lVlDEAD~mld~gF---~~~i~~I~~~~~~~~ 181 (417)
T PRK11192 105 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGF---AQDVEHIAAETRWRK 181 (417)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC---HHHHHHHHHHCCCCC
T ss_conf 05998568787999999836999899786077778863670104574899967552111354---789999986476772
Q ss_pred EEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07996584023100101346775178887753277887773695640330000245555455899999742454332000
Q gi|255764515|r 153 RFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIA 232 (458)
Q Consensus 153 ~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (458)
..+++|||.-.+...+ |...+.... ..+.....
T Consensus 182 Q~llfSATl~~~~v~~--------------------l~~~~l~~p---------------------------~~i~~~~~ 214 (417)
T PRK11192 182 QTLLFSATLEGDGVQD--------------------FAERLLNDP---------------------------VEVDAEPS 214 (417)
T ss_pred EEEEEEEECCHHHHHH--------------------HHHHHCCCC---------------------------EEEEECCC
T ss_conf 3899973268478999--------------------999836798---------------------------89996467
Q ss_pred CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCH
Q ss_conf 01001001100034524536899888999999851033452022347888875420354100022343000134333325
Q gi|255764515|r 233 DYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKAL 312 (458)
Q Consensus 233 ~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l 312 (458)
. ..... ....+... .....|...|
T Consensus 215 ~---~~~~~-i~q~~~~~----------------------------------------------------~~~~~k~~~L 238 (417)
T PRK11192 215 R---RERKK-IHQWYYRA----------------------------------------------------DDLEHKTALL 238 (417)
T ss_pred C---CCCCC-EEEEEEEE----------------------------------------------------CCHHHHHHHH
T ss_conf 6---66674-36999993----------------------------------------------------7689999999
Q ss_pred HHHHHCCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCC
Q ss_conf 6654124884034222367888664100----------026533445899876424588558998442211162200178
Q gi|255764515|r 313 EVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 382 (458)
Q Consensus 313 ~~il~~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~ 382 (458)
..++......++||||+-....+.+... ++++.+.++|..+++.|++|+++||++| ++++-|||+.. .
T Consensus 239 ~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaT-DvaaRGiDi~~-V 316 (417)
T PRK11192 239 CHLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVAT-DVAARGIDIDD-I 316 (417)
T ss_pred HHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCCCC-C
T ss_conf 999853476652153112466768988653148835754001799999999999976999899981-24346777046-9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 5999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 383 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 383 ~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
++||+||+|-++..+.|++||.. |.|++- .++-|++++ |..++..+++-
T Consensus 317 ~~VInyd~P~~~~~YvHRiGRTG-----R~G~~G--~ait~v~~~--d~~~~~~ie~~ 365 (417)
T PRK11192 317 SHVINFDMPRSADTYLHRIGRTG-----RAGKKG--TAISLVEAH--DHLLLGKIERY 365 (417)
T ss_pred CEEEEECCCCCHHHHHHHCCHHH-----CCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf 88999799998889233067723-----489954--899987489--99999999999
No 27
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=1e-25 Score=173.99 Aligned_cols=321 Identities=19% Similarity=0.246 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCC-------CCEEEEECC-HHHHHHHH------HHH
Q ss_conf 874789999999996798099958899868999-999999997599-------949999160-46569999------999
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGE-------KSVLVIAPL-RVAQSVWT------SEV 66 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~-------~~~LIv~P~-~l~~~~W~------~Ei 66 (458)
++.|||.+|+..+++.+++|+..++|+|||+.| +.++..+...+. -.+|+|+|. +|..+++. +++
T Consensus 32 ~p~~~Q~~a~~~i~~G~~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPLkAL~~D~~r~L~~pl~~i 111 (878)
T PRK13767 32 TFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPLRALNNDIHRNLEEPLEEI 111 (878)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 99989999999996799889989998139999999999999850003677887289996847988999999888699999
Q ss_pred HHHC-----CCCCCEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHH-----HCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 9855-----88881599985897--89888730779869980642023344-----200011322044045310024654
Q gi|255764515|r 67 QRWS-----NFSHMNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQ-----ELKGTWPFATIVVDESTKLKSFRL 134 (458)
Q Consensus 67 ~kf~-----~~~~~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~-----~~~~~~~~~~iIiDEaH~lkn~~~ 134 (458)
..+. ..+.+.+.+-+|+. .+|.++.....+|++||.|++..+.. ..+.. -..||+||+|.+-+ +
T Consensus 112 ~~~~~~~g~~~~~i~v~vr~GDT~~~er~r~~~~pp~ILiTTPEsL~lll~~~~~~~~l~~--l~~VIvDE~H~l~~--~ 187 (878)
T PRK13767 112 REIAKERGIELPEIRHAVRTGDTSSYEKQKMLRKPPHILITTPETLAILLNSPKFREKLRT--VKWVIVDEIHSLAE--N 187 (878)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHCC--CCEEEECCCHHHHC--C
T ss_conf 9998752788777447763699999999999748998798798999999549679998558--99999817167524--7
Q ss_pred CCHHHHHHH---HHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHH
Q ss_conf 311567777---66543059807996584023100101346775178887753277887773695640330000245555
Q gi|255764515|r 135 RQGSKTARA---LAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAK 211 (458)
Q Consensus 135 ~~~s~~~~~---l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (458)
..+++..-. +..+......+|+||||- .+|.++ ..+|.+.... +.. ....
T Consensus 188 kRG~~l~l~L~RL~~~~~~~~~riglSATv--~~~~~~---a~~L~g~~~~-----------------g~~-r~~~---- 240 (878)
T PRK13767 188 KRGVHLSLSLERLEELVGGEFVRIGLSATI--EPLEEV---AKFLVGYNDD-----------------GEP-RDCE---- 240 (878)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCHHHH---HHHHCCCCCC-----------------CCC-CCEE----
T ss_conf 745899999999998668998799996464--899999---9985155667-----------------999-8528----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 45589999974245433200001001001100034524536899888999999851033452022347888875420354
Q gi|255764515|r 212 ETAQKEIEAQLSDCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANG 291 (458)
Q Consensus 212 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~ 291 (458)
++.... ..+.......+.... . ... .....
T Consensus 241 --------------iv~~~~------~k~~~~~~~~p~~~~-~------------~~~------~~~~~----------- 270 (878)
T PRK13767 241 --------------IVDTRF------AKPIDIKVLCPVDDL-I------------HTP------AEEIS----------- 270 (878)
T ss_pred --------------EECCCC------CCCCEEEEECCCCCC-C------------CCC------HHHHH-----------
T ss_conf --------------954687------787426884456212-4------------588------55689-----------
Q ss_pred CCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHC----------------CCCCCCHHHHHHHHH
Q ss_conf 1000223430001343333256654124884034222367888664100----------------026533445899876
Q gi|255764515|r 292 AVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------------FPQGRTLDKDPCTIQ 355 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~~----------------~~~g~~~~~r~~~i~ 355 (458)
..-++.+.+++++ ++..+||+|.....+.+... .+++.+.+.|.++-+
T Consensus 271 --------------~~~~~~l~~~i~~--~~~tLvF~NtR~~aE~~~~~L~~~~~~~~~~~~i~~HHgSls~e~R~~vE~ 334 (878)
T PRK13767 271 --------------EALYETLDELIQE--HRTTLIFTNTRSGAERVVYKLRKRYPEEYDEDNIGAHHSSLSREVRLEVEE 334 (878)
T ss_pred --------------HHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf --------------9999999999983--897799915589999999999985343067543222017789999999999
Q ss_pred HHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCC
Q ss_conf 4245885589984422111622001785999908998986864456666202202037877528999985899
Q gi|255764515|r 356 EWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 428 (458)
Q Consensus 356 ~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~t 428 (458)
.|++|+.++++|| .+...|||... -+.||.+..|.+.+.+.|++||-- ||.|..... +++..+.
T Consensus 335 ~lk~G~l~~vV~T-sSLELGIDiG~-Vd~Viq~gsP~svarllQR~GRsG----H~~g~~s~g---~~vp~~~ 398 (878)
T PRK13767 335 KLKRGELKVVVSS-TSLELGIDIGY-IDLVVLLGSPKSVSRLLQRIGRAG----HRLGEVSKG---RIIVVDR 398 (878)
T ss_pred HHHCCCCCEEEEE-CHHHCCCCCCC-CCEEEECCCCHHHHHHHHHHCCCC----CCCCCEEEE---EEEECCC
T ss_conf 9857998689982-73650777775-258997589611899999833578----999980469---9997981
No 28
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=5.7e-25 Score=169.49 Aligned_cols=320 Identities=17% Similarity=0.204 Sum_probs=200.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCC-----CC--CEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 874789999999996798099958899868999-99999999759-----99--49999160465699999999855888
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWG-----EK--SVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~-----~~--~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
+.-|-|..++-.+++.+..++.+++|+|||+.- |-++..+.... .. .+||+||+.-+..|-.+++..+....
T Consensus 23 ~PTpIQ~~aIP~iL~GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTRELA~Qi~~~~~~l~~~~ 102 (457)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL 102 (457)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999997799889988981189999999999998636765445688249997687999999999999742558
Q ss_pred CCEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 81599985897--898887307798699806420233442-000113220440453100246543115677776654305
Q gi|255764515|r 74 HMNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 74 ~~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
.+++.++.|.. ......+....+|+|.|...+..+... ......-.++|+|||++|-+.+-. ... +.+......
T Consensus 103 ~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDEAD~mLd~gF~--~di-~~Il~~lp~ 179 (457)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFI--HDI-RRVLAKLPA 179 (457)
T ss_pred CCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCCH--HHH-HHHHHHCCC
T ss_conf 94599997997775999986189998998928889888626776575239998370565156653--668-999863876
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002455554558999997424543320
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLD 230 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (458)
....++.|||- ++.+.+ +...+.... ..+..
T Consensus 180 ~rQ~llfSAT~-~~~v~~--------------------l~~~~l~~p---------------------------~~i~v- 210 (457)
T PRK10590 180 KRQNLLFSATF-SDDIKA--------------------LAEKLLHNP---------------------------LEIEV- 210 (457)
T ss_pred CCEEEEEECCC-CHHHHH--------------------HHHHHCCCC---------------------------EEEEE-
T ss_conf 52689995048-889999--------------------999976898---------------------------89996-
Q ss_pred CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 00010010011000345245368998889999998510334520223478888754203541000223430001343333
Q gi|255764515|r 231 IADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 310 (458)
Q Consensus 231 ~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~ 310 (458)
........ . ....+... ....|.+
T Consensus 211 -~~~~~~~~-~-i~q~~~~v-----------------------------------------------------~~~~k~~ 234 (457)
T PRK10590 211 -ARRNTASE-Q-VTQHVHFV-----------------------------------------------------DKKRKRE 234 (457)
T ss_pred -CCCCCCCC-C-EEEEEEEE-----------------------------------------------------CHHHHHH
T ss_conf -36766561-3-04899995-----------------------------------------------------6678999
Q ss_pred CHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 25665412488403422236788866410----------00265334458998764245885589984422111622001
Q gi|255764515|r 311 ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 311 ~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
.|..++.+....++||||+.....+.+.. .++++.+..+|..+++.|++|+.+|||+| +.++=|||+..
T Consensus 235 ~L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaT-DvaaRGiDi~~ 313 (457)
T PRK10590 235 LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-DIAARGLDIEE 313 (457)
T ss_pred HHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCCC
T ss_conf 99999861586633588411999999999985569982323247899999999999986998299957-70115566356
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 785999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
.++||+||+|-++..+..++||.. |.|.+ =..+-|++++ |...++.+++-
T Consensus 314 -V~~VInyD~P~~~e~YvHRiGRTG-----RaG~~--G~ait~v~~~--e~~~~~~ie~~ 363 (457)
T PRK10590 314 -LPHVVNYELPNVPEDYVHRIGRTG-----RAAAT--GEALSLVCVD--EHKLLRDIEKL 363 (457)
T ss_pred -CCEEEEECCCCCHHHEECCCCCCC-----CCCCC--EEEEEEECHH--HHHHHHHHHHH
T ss_conf -887999389997445002267060-----58995--3699986689--99999999999
No 29
>KOG1123 consensus
Probab=99.95 E-value=1.6e-26 Score=178.85 Aligned_cols=334 Identities=19% Similarity=0.266 Sum_probs=222.5
Q ss_pred CCCHHHHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 874789999999996798---09995889986899999999999759994999916046569999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKR---CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~---~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~ 78 (458)
+++|||...+.+|..|+| |+|..++|.|||+.-+.++... .+++||+|..++-..||...|..|.....-.+.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti----kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI----KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEEEE----CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 5575378789997378854476189856998742545555455----142799955756699999998745016855457
Q ss_pred EEECCHHHHHHHHCCCCCEEEECCCCHHHHH---------HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9858978988873077986998064202334---------4200011322044045310024654311567777665430
Q gi|255764515|r 79 VITGTVKQRTKVLKTPAVLYVINFENLGWLV---------QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 79 ~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~---------~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.++.+.+++ +.....++|+||.++..-. -++.....|.++++||.|.+ .++.+|......
T Consensus 378 rFTsd~Ke~---~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv-------PA~MFRRVlsiv- 446 (776)
T KOG1123 378 RFTSDAKER---FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV-------PAKMFRRVLSIV- 446 (776)
T ss_pred EEECCCCCC---CCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHCCEEEEEEEEHHCCC-------HHHHHHHHHHHH-
T ss_conf 720244545---789885799873131105664277999999984371016884211112-------699999999999-
Q ss_pred CCCEEEEECCCCHHH--HCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 598079965840231--001013467751788877532778877736956403300002455554558999997424543
Q gi|255764515|r 150 ESERFIELTGTPSPN--GLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 150 ~~~~~l~LTgTPi~n--~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (458)
++--+++||||-+.. .+.| |+||-.. .-|.++|.+..+.+ ++.
T Consensus 447 ~aHcKLGLTATLvREDdKI~D----LNFLIGP-------KlYEAnWmdL~~kG------------------------hIA 491 (776)
T KOG1123 447 QAHCKLGLTATLVREDDKITD----LNFLIGP-------KLYEANWMDLQKKG------------------------HIA 491 (776)
T ss_pred HHHHHCCCEEEEEECCCCCCC----CCEEECC-------HHHHCCHHHHHHCC------------------------CEE
T ss_conf 987612651478512663333----3000054-------32112489897478------------------------046
Q ss_pred HHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 32000010010011000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 228 SLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
...| ..++++|+++..+.|-..... +. .++ ...+-.
T Consensus 492 ---~VqC--------aEVWCpMt~eFy~eYL~~~t~-------kr-----------~lL---------------yvMNP~ 527 (776)
T KOG1123 492 ---KVQC--------AEVWCPMTPEFYREYLRENTR-------KR-----------MLL---------------YVMNPN 527 (776)
T ss_pred ---EEEE--------EEEECCCCHHHHHHHHHHHHH-------HH-----------HEE---------------EECCCC
T ss_conf ---7765--------314557788999999853145-------44-----------122---------------441740
Q ss_pred CCCCHHHHHH--CCCCCEEEEHHHHHHHHHHH----H-HCCCCCCCHHHHHHHHHHHC-CCCCCEEEEEHHHCCCCCCCC
Q ss_conf 3332566541--24884034222367888664----1-00026533445899876424-588558998442211162200
Q gi|255764515|r 308 KIKALEVIIE--KANAAPIIVAYHFNSDLARL----Q-KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQ 379 (458)
Q Consensus 308 k~~~l~~il~--~~~~~kviif~~~~~~~~~i----~-~~~~~g~~~~~r~~~i~~f~-~~~~~vli~s~~~~~~GlnL~ 379 (458)
|+.+-.-++. +..|.|+|||+..+--+... . .-+.++++..+|..+++.|+ ++.++-+++| ++|.+.++|.
T Consensus 528 KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLP 606 (776)
T KOG1123 528 KFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLP 606 (776)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCC
T ss_conf 337889999999864983899825088999999970896377888555899999853448733348875-0357655677
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHH
Q ss_conf 1785999908998-9868644566662022020378775289999858996899
Q gi|255764515|r 380 YGGNILVFFSLWW-DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 432 (458)
Q Consensus 380 ~a~~~iI~~~~~w-n~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~ 432 (458)
.| +++|-.+.+. +-...-|+.|||.|.. .|.-..-+++.|-||+++|.|-.
T Consensus 607 EA-nvLIQISSH~GSRRQEAQRLGRILRAK-k~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123 607 EA-NVLIQISSHGGSRRQEAQRLGRILRAK-KRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHHH-HCCCCCCCEEEEEEEECCHHHHH
T ss_conf 66-089997245662278999988998776-33760200024443106418877
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1e-24 Score=168.02 Aligned_cols=318 Identities=18% Similarity=0.227 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 874789999999996798099958899868999-9999999975-999499991604656999999998558-8881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSN-FSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~-~~~~~~~ 78 (458)
++.|-|.+++-.+++.+..++.+++|+|||+.- |-++..+... ....+||+||+.-+..|-.+++.++.. .+.+++.
T Consensus 26 ~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~~ikv~ 105 (459)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (459)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99989999999997799889988998589999999999841136789859999675999999999999998505882599
Q ss_pred EEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 985897--898887307798699806420233442-00011322044045310024654311567777665430598079
Q gi|255764515|r 79 VITGTV--KQRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 79 ~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
.+.|.. ......+....+++|.|...+....+. ......-.++|+|||+++-+.+- ......+.......+..+
T Consensus 106 ~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~d~l~~~~l~l~~v~~lVlDEAD~mLd~gF---~~~i~~Il~~~p~~rQ~~ 182 (459)
T PRK11776 106 TLCGGVPMGPQIGSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGF---QDAIDAIIRQAPARRQTL 182 (459)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCC---HHHHHHHHHHCCCCCEEE
T ss_conf 99899327999999746999999895899988751663223103899706245432786---688999998688130268
Q ss_pred EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
+.|||- +..+ ..+...|.... ..+.. ....
T Consensus 183 lfSAT~-p~~i--------------------~~l~~~~l~~p---------------------------~~i~v--~~~~ 212 (459)
T PRK11776 183 LFSATY-PEGI--------------------AAISARFQRDP---------------------------VEVKV--ESTH 212 (459)
T ss_pred EEECCC-CHHH--------------------HHHHHHHCCCC---------------------------EEEEE--CCCC
T ss_conf 884568-9899--------------------99999977898---------------------------99996--7877
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf 01001100034524536899888999999851033452022347888875420354100022343000134333325665
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 315 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~i 315 (458)
.. +.+....+. .....|.+.|..+
T Consensus 213 ~~--~~I~q~~~~------------------------------------------------------v~~~~K~~~L~~l 236 (459)
T PRK11776 213 DD--STIEQRFYE------------------------------------------------------VDPDERLPALQRL 236 (459)
T ss_pred CC--CCCEEEEEE------------------------------------------------------ECHHHHHHHHHHH
T ss_conf 79--863799999------------------------------------------------------7718789999999
Q ss_pred HHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEE
Q ss_conf 412488403422236788866410----------0026533445899876424588558998442211162200178599
Q gi|255764515|r 316 IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 385 (458)
Q Consensus 316 l~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~i 385 (458)
+...+..++||||+.....+.+.. .++++.+..+|...++.|++|+.+||++| +.++-|||+.. .++|
T Consensus 237 l~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGIDi~~-V~~V 314 (459)
T PRK11776 237 LLHYRPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-DVAARGLDIKS-LEAV 314 (459)
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCCC-CCEE
T ss_conf 973687660376174899999999998679968998799999999999999977999799881-04347677135-9889
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 990899898686445666620220203787752899998589968999999999
Q gi|255764515|r 386 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 439 (458)
Q Consensus 386 I~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~ 439 (458)
|+||+|-++..+.+|+||.. |.|.+ =..+-|++++ |.+.++.+++
T Consensus 315 InyDlP~~~e~YvHRiGRTG-----RaG~~--G~ait~vt~~--e~~~l~~ie~ 359 (459)
T PRK11776 315 INYELARDPEVHVHRIGRTG-----RAGSK--GLALSLVAPE--EMQRAAAIED 359 (459)
T ss_pred EEECCCCCHHHHHHCCCHHH-----CCCCC--EEEEEEECHH--HHHHHHHHHH
T ss_conf 99789897455202052513-----78996--5799998689--9999999999
No 31
>PRK00254 ski2-like helicase; Provisional
Probab=99.95 E-value=2.6e-25 Score=171.62 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHHHHH-HHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 874789999999-9967980999588998689999999-99997599949999160465699999999855888815999
Q gi|255764515|r 2 NLAPHQTKIVDW-ILDHKRCAIWASMGSGKTVSVLTAL-SYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 2 ~L~p~Q~~~v~~-~~~~~~~ll~~~~G~GKT~~al~~~-~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
+|+|+|.+++.. ++++++.+++.++|+|||+.|-.++ ..+.. ..++++.++|-..+.++=..+|.+|. ..+.++..
T Consensus 23 ~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l~-~~~k~iyi~P~kALa~EK~~~f~~~~-~~g~~V~~ 100 (717)
T PRK00254 23 ELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLLR-EGGKAVYLVPLKALAEEKFREFKDWE-VLGLRVAM 100 (717)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEE
T ss_conf 26899999987423369818998998874899999999999985-29929999267999999999998777-44988989
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC-CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8589789888730779869980642023344200-011322044045310024654311567777665430598079965
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK-GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELT 158 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~-~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LT 158 (458)
.+|+...... +...++++|+|+|.+..+.+... .....++||+||.|.+.... ++...=-.+.++. ...+.++||
T Consensus 101 ~tGd~~~~~~-~l~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH~igD~~--RG~~lE~~l~~l~-~~~qiIgLS 176 (717)
T PRK00254 101 ATGDYDSKDE-WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIHLIGSRD--RGATLEFILTHML-GRAQIIGLS 176 (717)
T ss_pred EECCCCCCCC-CCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEEECCCCC--CHHHHHHHHHHHH-CCCEEEEEE
T ss_conf 7489888701-04689999988899999997162565326989997607888987--4099999999510-036699996
Q ss_pred CCCHHHHCCCHHHHHHHCC
Q ss_conf 8402310010134677517
Q gi|255764515|r 159 GTPSPNGLIDLWGQIWFLD 177 (458)
Q Consensus 159 gTPi~n~~~el~~ll~~l~ 177 (458)
|| ++| +.|+ ..||+
T Consensus 177 AT-i~N-~~~l---a~WL~ 190 (717)
T PRK00254 177 AT-IGN-PEEL---AEWLN 190 (717)
T ss_pred EE-CCC-HHHH---HHHHC
T ss_conf 33-499-8999---99828
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=5.3e-24 Score=163.62 Aligned_cols=310 Identities=15% Similarity=0.205 Sum_probs=197.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 874789999999996798099958899868999-9999999975--------9994999916046569999999985588
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRWSNF 72 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~ 72 (458)
+.-|-|..++-.+++.+..++..++|+|||+.- |-++..+... ....+||+||+.-+..|-.+++.++...
T Consensus 31 ~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~ 110 (574)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD 110 (574)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 89999999999995799889984898889999999999999837443457789961999779899999999999998645
Q ss_pred CCCEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHH--CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 881599985897--898887307798699806420233442--0001132204404531002465431156777766543
Q gi|255764515|r 73 SHMNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQE--LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 73 ~~~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~--~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
..+++.++.|.. ......+....+|+|.|...+...... ......-.++|+|||..|-+.+- .......+..+.
T Consensus 111 ~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD~LLd~gF--~~di~~IL~~lP 188 (574)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGF--IKDIRFLLRRMP 188 (574)
T ss_pred CCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCC--HHHHHHHHHHCC
T ss_conf 897799997996688999987359998998989999999817986533315899627326542877--999999999666
Q ss_pred HC-CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05-98079965840231001013467751788877532778877736956403300002455554558999997424543
Q gi|255764515|r 149 WE-SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 149 ~~-~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (458)
.+ ....++.|||- ++...++ ...+++... .+
T Consensus 189 ~~~~rQ~iLfSATl-~~~V~~l--------------------a~~~l~~P~---------------------------~i 220 (574)
T PRK04537 189 ERGTRQTLLFSATL-SHRVLEL--------------------AYEHMNEPE---------------------------KL 220 (574)
T ss_pred CCCCCEEEEEEECC-CHHHHHH--------------------HHHHCCCCE---------------------------EE
T ss_conf 55685589998327-7799999--------------------999779986---------------------------99
Q ss_pred HHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 32000010010011000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 228 SLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
...... ..... ....+.. .....
T Consensus 221 ~v~~~~---~~~~~-I~Q~~~~-----------------------------------------------------~~~~~ 243 (574)
T PRK04537 221 VVETET---ITAAR-VRQRIYF-----------------------------------------------------PSDEE 243 (574)
T ss_pred EECCCC---CCCCC-EEEEEEE-----------------------------------------------------CCHHH
T ss_conf 965665---45776-0389997-----------------------------------------------------77789
Q ss_pred CCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 33325665412488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 308 KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 308 k~~~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
|...|..++......++||||+.....+.+.. .++++.+..+|...++.|++++.+|||+| +.++=|||
T Consensus 244 K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaT-DVAARGID 322 (574)
T PRK04537 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-DVAARGLH 322 (574)
T ss_pred HHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCC
T ss_conf 99999999972677651153341899999999999779968997099999999999999976999799773-50023357
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 00178599990899898686445666620220203787752899998589
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
+.. .++||+||+|.++..+.+++||.. |.|.+ =..+-|++++
T Consensus 323 Ip~-V~~VINYDlP~~~e~YVHRIGRTG-----RaGr~--G~AITfv~~~ 364 (574)
T PRK04537 323 IDG-VKYVYNYDLPFDAEDYVHRIGRTA-----RLGEE--GDAISFACER 364 (574)
T ss_pred CCC-CCEEEEECCCCCHHHHHCCCCHHH-----CCCCC--EEEEEEECHH
T ss_conf 146-997999579698214112453503-----78993--3599987779
No 33
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=1.6e-25 Score=172.87 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98747899999999967980999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.+|+|||.+++..+.+.++.+++.++|+|||+.|-.++...... .++++.++|--.+.++...++.+|.. .+.++...
T Consensus 21 ~~l~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~-~~k~iyi~P~kAL~~EK~~~~~~~~~-~g~~v~~~ 98 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSRLRS-LGMRVKIS 98 (674)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEECCHHHHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 98898999999999779959997899986999999999999985-89799987789999999999998873-79827788
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC-CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCEEEEE
Q ss_conf 5897898887307798699806420233442000-1132204404531002465431156777766543--059807996
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG-TWPFATIVVDESTKLKSFRLRQGSKTARALAKPA--WESERFIEL 157 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~-~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~--~~~~~~l~L 157 (458)
+|+...... ....++++|+|+|.+..+...... ....++||+||.|.+.+.. ++...--.+.++. ....++++|
T Consensus 99 tGd~~~~~~-~~~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~i~d~~--RG~~lE~~l~kl~~l~~~~qiIgL 175 (674)
T PRK01172 99 IGDYDDPPD-FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDED--RGPTLETVLSSARYVNPDARILAL 175 (674)
T ss_pred ECCCCCCCC-CCCCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEECCCCC--CHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 538889801-02558999987899999986495022136989982652506877--249999999999853866079971
Q ss_pred CCCCHHHHCCCHHHHHHHCC
Q ss_conf 58402310010134677517
Q gi|255764515|r 158 TGTPSPNGLIDLWGQIWFLD 177 (458)
Q Consensus 158 TgTPi~n~~~el~~ll~~l~ 177 (458)
||| ++ ++.|+ ..||+
T Consensus 176 SAT-i~-N~~~l---a~WL~ 190 (674)
T PRK01172 176 SAT-VS-NANEL---AQWLN 190 (674)
T ss_pred CCC-CC-CHHHH---HHHHC
T ss_conf 578-68-99999---98838
No 34
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=7.5e-26 Score=174.85 Aligned_cols=350 Identities=15% Similarity=0.139 Sum_probs=178.0
Q ss_pred CCCCHHHHHHHHHHH-----HCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 987478999999999-----679809995889986899999999999759-99499991604656999999998558888
Q gi|255764515|r 1 MNLAPHQTKIVDWIL-----DHKRCAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~-----~~~~~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
+-|||||.+|+..+. +++++||++.+|+|||.+|++++..|...+ .+++|-+|=.+.+..|=..+|..+...+.
T Consensus 415 i~lR~YQ~~AI~~v~~a~~~~~rraLl~MATGTGKTrtaial~~rLlk~~~~kRILFLvDR~~L~~QA~~~F~~~~~~~~ 494 (1126)
T PRK11448 415 LGLRYYQEDAIQAVEKALANGQREILLAMATGTGKTRTAIALMYRLLKAKRFKRILFLVDRRALGEQALDAFKDTKIEGN 494 (1126)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 77868899999999999980985468872488858989999999999658767257985658999999998754345456
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHH-----HCCCCCCCCEEECCCCCCCCCCC------------CCCH
Q ss_conf 159998589789888730779869980642023344-----20001132204404531002465------------4311
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQ-----ELKGTWPFATIVVDESTKLKSFR------------LRQG 137 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~-----~~~~~~~~~~iIiDEaH~lkn~~------------~~~~ 137 (458)
..+.-+.+..............|++.||+++..... .......||+||+||||+=-+.. -...
T Consensus 495 ~~~~~~~~v~~l~~~~~~~~~rv~isT~q~m~~~i~~~~~~~~~~~~~FDlIIiDEaHRgy~ld~em~e~e~~~rd~~s~ 574 (1126)
T PRK11448 495 QTFASIYDIKGLTDKFPEDETKVHVATVQSMVKRILQSDDSEPPPVGQYDCIVVDEAHRGYTLDKEMTEGELQFRDQLDY 574 (1126)
T ss_pred CCCCHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHH
T ss_conf 66400220010256787877719997307899875235767799998513798977878874332311000102320247
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 56777766543059807996584023100101346775178887753277887773695640330000245555455899
Q gi|255764515|r 138 SKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217 (458)
Q Consensus 138 s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (458)
-...+.+..... -..++|||||-.| --++|+ .+. +-+++..-..+..-..... .+..
T Consensus 575 ~skyr~IldYFD--A~~iGLTATP~~~-T~~~Fg--------~P~--~~Ys~~eAV~DG~LVd~~~-P~~i--------- 631 (1126)
T PRK11448 575 VSKYRRVLDYFD--AVKIGLTATPALH-TTEIFG--------EPV--YTYSYREAVIDGYLIDHEP-PIRI--------- 631 (1126)
T ss_pred HHHHHHHHHHHH--HHHHCCCCCCCCC-HHHHHC--------CCC--EEECHHHHHCCCCCCCCCC-CEEE---------
T ss_conf 778999987621--5540476799955-567709--------973--0005888730475568868-8799---------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHH-HHCCCC-CCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999742454332000010010011000345245368998889999998-510334-520223478888754203541000
Q gi|255764515|r 218 IEAQLSDCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELY-CDLQGE-NIEAFNSASKTVKCLQLANGAVYY 295 (458)
Q Consensus 218 l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~q~~~~~~~~ 295 (458)
...+....+... ..++...++......- ..+.+. .... ....+ .+.+
T Consensus 632 -~T~l~~~Gi~~~-------------------~~e~~~~~~~~~~~~~~~~~~de~~~~~----~~fnr--~v~~----- 680 (1126)
T PRK11448 632 -ETKLAKEGIHFE-------------------KGEQVEVINTQTGEIDNDTLEDELDFEV----EDFNR--RVIT----- 680 (1126)
T ss_pred -EEEEECCCCCCC-------------------CCCHHHHCCCHHHHHHCCCCCCCCCCCH----HHHCC--HHCC-----
T ss_conf -756510460358-------------------7643442030000020255873133788----88273--2038-----
Q ss_pred CCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHH----HHHHCCCC--------------CCCHHHHHHHHHHH
Q ss_conf 2234300013433332566541248840342223678886----64100026--------------53344589987642
Q gi|255764515|r 296 DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLA----RLQKAFPQ--------------GRTLDKDPCTIQEW 357 (458)
Q Consensus 296 ~~~~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~~----~i~~~~~~--------------g~~~~~r~~~i~~f 357 (458)
+ .....-++.+.+-+......|-||||......+ .+.+.|.. +. .+.-...|+.|
T Consensus 681 -~-----~~nr~v~~~l~~~~~~~~~gKTiIFA~~~~HAd~Iv~~l~e~F~~~y~~~~~~~~~~It~~-~~~~~~lI~~F 753 (1126)
T PRK11448 681 -E-----SFNRVVCEELAKYLDPTGEGKTLIFCVTDAHADMVVRLLKEAFKKKYGQVEDDAIIKITGD-ADKVQQLIRRF 753 (1126)
T ss_pred -H-----HHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCCHHHHHHHH
T ss_conf -3-----4799999999984588999876999278699999999999998864787678448997088-84478999972
Q ss_pred CCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCC
Q ss_conf 45885589984422111622001785999908998986864456666202202037
Q gi|255764515|r 358 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 413 (458)
Q Consensus 358 ~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~G 413 (458)
++.+.+.+.+|.+-..+|++....+| +||+=+.-|...++|.+||..|.+-+ +|
T Consensus 754 kn~~~P~IAVTVDmL~TGiDVPei~n-LVF~R~V~S~i~F~QMiGRGTRlc~~-i~ 807 (1126)
T PRK11448 754 KNERLPNIVVTVDLLTTGIDVPSICN-LVFLRRVKSRILYEQMKGRATRLCPD-IG 807 (1126)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCEE-EEEEEECCCHHHHHHHHCCCCCCCCC-CC
T ss_conf 57899838998562104766642016-88766756677866541675543766-68
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=4.8e-23 Score=157.83 Aligned_cols=320 Identities=17% Similarity=0.264 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC--------CCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 74789999999996798099958899868999-9999999975--------99949999160465699999999855888
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW--------GEKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~--------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
.-|-|..++-.+++++..++..++|+|||+.- |-++..+... +..++|||||+.-+..|-.+++..+....
T Consensus 107 PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~L~~~~ 186 (472)
T PRK01297 107 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT 186 (472)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999976998899899986799999999999997177510113689529998799999999999999974627
Q ss_pred CCEEEEEECCH--HHHHHHHC-CCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 81599985897--89888730-77986998064202334420-0011322044045310024654311567777665430
Q gi|255764515|r 74 HMNISVITGTV--KQRTKVLK-TPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 74 ~~~~~~~~g~~--~~r~~~~~-~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.+++..+.|.. ....+.+. ...+|+|.|...+..+.... .....-..+|+|||+++-+.+-. ....+.+..+..
T Consensus 187 ~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~lVlDEAD~LLd~gf~--~~v~~Il~~~p~ 264 (472)
T PRK01297 187 GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFI--PQVRQIIRQTPR 264 (472)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEEEEEECHHHHHCCCCH--HHHHHHHHHCCC
T ss_conf 976999978988799999985589988997979999874348254255229999873121025759--999999996898
Q ss_pred CC-CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59-80799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 150 ES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 150 ~~-~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
+. ...++.|||-- ....+ +...|.... ..+.
T Consensus 265 ~~~rQ~~lfSATl~-~~v~~--------------------l~~~~~~~p---------------------------~~v~ 296 (472)
T PRK01297 265 KEERQTLLFSATFT-DDVMN--------------------LAKQWTTDP---------------------------AIVE 296 (472)
T ss_pred CCCCEEEEEECCCC-HHHHH--------------------HHHHHCCCC---------------------------EEEE
T ss_conf 55716999852577-89999--------------------999977998---------------------------8999
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
...... ....+. ..+.. .....|
T Consensus 297 i~~~~~---~~~~v~-q~~~~-----------------------------------------------------~~~~dk 319 (472)
T PRK01297 297 IEPENV---ASDTVE-QHVYA-----------------------------------------------------VAGSDK 319 (472)
T ss_pred ECCCCC---CCCCEE-EEEEE-----------------------------------------------------CCHHHH
T ss_conf 657766---777602-89998-----------------------------------------------------188899
Q ss_pred CCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 33256654124884034222367888664100----------02653344589987642458855899844221116220
Q gi|255764515|r 309 IKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 309 ~~~l~~il~~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
...|.+++......++||||+.....+.+... ++++.+..+|...++.|++|+.+|||+| +.++=|||+
T Consensus 320 ~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGLDi 398 (472)
T PRK01297 320 YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-DVAGRGIHI 398 (472)
T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCC
T ss_conf 9999999984798736896174999999998765449616864377899999999999976999699886-613366775
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 01785999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 379 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 379 ~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
. ..++||+||+|-++..+.+|+||.. |.|++- .++-|++++ |..++..++..
T Consensus 399 ~-~V~~VInyD~P~~~~~YIHRiGRTG-----RaG~~G--~aisfv~~~--d~~~~~~ie~~ 450 (472)
T PRK01297 399 D-GISHVINFTLPEDPDDYVHRIGRTG-----RAGASG--VSISFAGED--DAFQLPEIEEL 450 (472)
T ss_pred C-CCCEEEEECCCCCHHHHHHCCCHHH-----CCCCCE--EEEEEECHH--HHHHHHHHHHH
T ss_conf 7-8888999689897676010265312-----689963--799986388--99999999999
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=99.94 E-value=1.1e-23 Score=161.79 Aligned_cols=165 Identities=24% Similarity=0.226 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 874789999999-9967980999588998689999-99999997599949999160465699999999855888815999
Q gi|255764515|r 2 NLAPHQTKIVDW-ILDHKRCAIWASMGSGKTVSVL-TALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 2 ~L~p~Q~~~v~~-~~~~~~~ll~~~~G~GKT~~al-~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
+|+|+|.+++.. ++++++.+++.++|+|||+.|- +++..+ ..+ ++++.++|--.+.++=..++.+|.+ .++++..
T Consensus 23 ~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l-~~g-~k~vYi~P~kALa~EK~~~~~~~~~-~gi~V~~ 99 (736)
T PRK02362 23 ELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAI-AEG-GKALYIVPLRALASEKFEEFSEFSE-LGLRVGI 99 (736)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH-HHC-CEEEEECCHHHHHHHHHHHHHHHHC-CCCEEEE
T ss_conf 578999999986435698189979999858999999999999-839-9799985879999999999998745-7998999
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC-CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEE
Q ss_conf 8589789888730779869980642023344200-011322044045310024654311567777665430--5980799
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK-GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW--ESERFIE 156 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~-~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~--~~~~~l~ 156 (458)
.+|+...+... ...++++|+|+|.+..+.+... .....++||+||.|.+.... ++...=-.+.++.. ...++++
T Consensus 100 ~tGd~~~~~~~-l~~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~d~~--RG~~lE~~lskl~~~~~~iqiIg 176 (736)
T PRK02362 100 STGDYDRRDEY-LGRNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHLIDSPN--RGPTLEVTLAKLRRLNPDMQVIA 176 (736)
T ss_pred EECCCCCCHHH-CCCCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEEECCCC--CHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 80898878314-3689999999799999984481676508989981767866887--24999999999973387743898
Q ss_pred ECCCCHHHHCCCHHHHHHHCC
Q ss_conf 658402310010134677517
Q gi|255764515|r 157 LTGTPSPNGLIDLWGQIWFLD 177 (458)
Q Consensus 157 LTgTPi~n~~~el~~ll~~l~ 177 (458)
|||| ++ ++.| +..||+
T Consensus 177 LSAT-l~-N~~~---la~WL~ 192 (736)
T PRK02362 177 LSAT-IG-NADE---LAAWLD 192 (736)
T ss_pred EECC-CC-CHHH---HHHHHC
T ss_conf 6245-58-9999---999838
No 37
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=4.3e-23 Score=158.13 Aligned_cols=309 Identities=16% Similarity=0.185 Sum_probs=193.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCC--------CCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 874789999999996798099958899868999-99999999759--------994999916046569999999985588
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWG--------EKSVLVIAPLRVAQSVWTSEVQRWSNF 72 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~--------~~~~LIv~P~~l~~~~W~~Ei~kf~~~ 72 (458)
+.-|-|..++-.+++.+..++.+++|+|||+.= +.++..+.... ...+||+||+.-+..|-.+++..+...
T Consensus 31 ~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~~ 110 (423)
T PRK04837 31 YCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQA 110 (423)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999996799889989998749999999999999837453345567861899938899999999999997432
Q ss_pred CCCEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 881599985897--8988873077986998064202334420-0011322044045310024654311567777665430
Q gi|255764515|r 73 SHMNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 73 ~~~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
..+++..+.|.. ......+....+|+|.|...+....+.. ........+|+|||+++-+.+- ..-.+.+.+...
T Consensus 111 ~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD~lld~gF---~~~i~~i~~~~p 187 (423)
T PRK04837 111 TGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGF---IKDIRWLFRRMP 187 (423)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHCCC---HHHHHHHHHHCC
T ss_conf 58459999899887999998717999899891899999864221236642899634465430263---999999999689
Q ss_pred CCCE--EEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5980--79965840231001013467751788877532778877736956403300002455554558999997424543
Q gi|255764515|r 150 ESER--FIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCL 227 (458)
Q Consensus 150 ~~~~--~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (458)
..+. .++.|||- +..+.++ ...+.... ..+
T Consensus 188 ~~~~r~~~lfSATl-~~~v~~l--------------------a~~~l~~p---------------------------~~i 219 (423)
T PRK04837 188 PANQRLNMLFSATL-SYRVREL--------------------AFEHMNNP---------------------------EYV 219 (423)
T ss_pred CCHHEEEEEEECCC-CHHHHHH--------------------HHHHCCCC---------------------------EEE
T ss_conf 62210899970368-8899999--------------------99977898---------------------------799
Q ss_pred HHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 32000010010011000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 228 SLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
.. ......... ....+-. .....
T Consensus 220 ~v--~~~~~~~~~--i~~~~~~-----------------------------------------------------~~~~~ 242 (423)
T PRK04837 220 EV--EPEQKTGHR--IKEELFY-----------------------------------------------------PSNEE 242 (423)
T ss_pred EE--CCCCCCCCC--EEEEEEE-----------------------------------------------------ECHHH
T ss_conf 96--577656654--2699999-----------------------------------------------------17277
Q ss_pred CCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 33325665412488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 308 KIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 308 k~~~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
|+..|..++++....++||||+.....+.+.. .++++.+..+|...++.|++|+.+|||+| +.++=|||
T Consensus 243 K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaT-DvaaRGLD 321 (423)
T PRK04837 243 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVAT-DVAARGLH 321 (423)
T ss_pred HHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCC
T ss_conf 99999999984088746886162888999999997659817872254579999999999976999899870-04327777
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 00178599990899898686445666620220203787752899998589
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
++. .++||+||+|-++..+..|+||.. |.|.+ -..+-|++++
T Consensus 322 i~~-V~~VInyD~P~~~~~YiHRiGRTg-----RaG~~--G~aitf~~~~ 363 (423)
T PRK04837 322 IPD-VTHVFNYDLPDDCEDYVHRIGRTG-----RAGAS--GHSISFACEE 363 (423)
T ss_pred CCC-CCEEEEECCCCCHHHEECCCCHHH-----CCCCC--EEEEEEECHH
T ss_conf 267-988999699897455100465412-----78994--6899987399
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=3.6e-23 Score=158.60 Aligned_cols=308 Identities=17% Similarity=0.214 Sum_probs=192.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 874789999999996798099958899868999-9999999975-999499991604656999999998558-8881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSN-FSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~-~~~~~~~ 78 (458)
+.-|-|..++-.+++.+..++.+++|+|||+.= |-++..+... ....+|||||+.-+..|-.+++..+.. .+.+.+.
T Consensus 28 ~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999999996799889978884789999999999986623689868997899899999999999997217997799
Q ss_pred EEECCHH--HHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 9858978--98887307798699806420233442-00011322044045310024654311567777665430598079
Q gi|255764515|r 79 VITGTVK--QRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 79 ~~~g~~~--~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
.+.|... .-...+....+|+|.|...+..+.+. ........++|+|||..+-+.+-. .-...+..........+
T Consensus 108 ~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~mL~~gF~---~di~~Il~~lp~~~Qt~ 184 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFI---EDVETIMAQIPEGHQTA 184 (629)
T ss_pred EEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHHHCCCCCH---HHHHHHHHHCCCCCEEE
T ss_conf 998997789999986279999996989999999729641200767898671553363659---99999998674031446
Q ss_pred EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
+.|||. +..+ ..+...|..... .+.+... .
T Consensus 185 LfSATm-p~~i--------------------~~la~~~l~~P~---------------------------~i~i~~~-~- 214 (629)
T PRK11634 185 LFSATM-PEAI--------------------RRITRRFMKEPQ---------------------------EVRIQSS-V- 214 (629)
T ss_pred EEECCC-CHHH--------------------HHHHHHHCCCCE---------------------------EEEECCC-C-
T ss_conf 663146-5999--------------------999998756987---------------------------9740455-5-
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf 01001100034524536899888999999851033452022347888875420354100022343000134333325665
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 315 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~i 315 (458)
...+.+..... ......|.++|..+
T Consensus 215 -~t~~~i~q~~~------------------------------------------------------~v~~~~K~~aL~~~ 239 (629)
T PRK11634 215 -TTRPDISQSYW------------------------------------------------------TVWGMRKNEALVRF 239 (629)
T ss_pred -CCCCCCEEEEE------------------------------------------------------EECCHHHHHHHHHH
T ss_conf -55776305999------------------------------------------------------96524579999999
Q ss_pred HHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEE
Q ss_conf 412488403422236788866410----------0026533445899876424588558998442211162200178599
Q gi|255764515|r 316 IEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNIL 385 (458)
Q Consensus 316 l~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~i 385 (458)
++.....++||||+.......+.. .++++.+..+|..+++.|++|+.+|||+| ++++=|||+.. .++|
T Consensus 240 L~~~~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaT-DvaARGLDi~~-V~~V 317 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT-DVAARGLDVER-ISLV 317 (629)
T ss_pred HHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCCC-CCEE
T ss_conf 861588848999822788999999999769965765689999999999999975999889878-62105577256-8889
Q ss_pred EEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 99089989868644566662022020378775289999858
Q gi|255764515|r 386 VFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 386 I~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
|+||+|.++..+..++||.- |.|.+ =..+-||++
T Consensus 318 INyDlP~d~e~YVHRiGRTG-----RaGr~--G~Aitfv~~ 351 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTG-----RAGRA--GRALLFVEN 351 (629)
T ss_pred EEECCCCCHHHCCCCCCCCC-----CCCCC--EEEEEEECH
T ss_conf 99689897434010258331-----68996--469998888
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=7.6e-23 Score=156.62 Aligned_cols=318 Identities=19% Similarity=0.207 Sum_probs=193.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCC--C----CCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 874789999999996798099958899868999-99999999759--9----9499991604656999999998558888
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWG--E----KSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~--~----~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
++.|+|..|+..+.+..+.|+.+++|+|||..| +.++..+...+ . =.+|.|+|-..+-+--..-++.|...-+
T Consensus 22 ~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G 101 (814)
T COG1201 22 SLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG 101 (814)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99878999999985898469986899973799999999999860688888856999957078887899999999999759
Q ss_pred CEEEEEECCH--HHHHHHHCCCCCEEEECCCCHHHHH-----HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1599985897--8988873077986998064202334-----42000113220440453100246543115677776654
Q gi|255764515|r 75 MNISVITGTV--KQRTKVLKTPAVLYVINFENLGWLV-----QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKP 147 (458)
Q Consensus 75 ~~~~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~-----~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~ 147 (458)
+.+.+-+|+. .+|........+|++||.|++.-+. ...+... ..||+||.|.+.+ ++++++.+-.+.++
T Consensus 102 ~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v--r~VIVDEiHel~~--sKRG~~Lsl~LeRL 177 (814)
T COG1201 102 IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDV--RYVIVDEIHALAE--SKRGVQLALSLERL 177 (814)
T ss_pred CCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCC--CEEEEEHHHHHHC--CCCCHHHHHHHHHH
T ss_conf 8444422878867763046999968995834899983688899986078--0999512545434--56531343329999
Q ss_pred HHCC--CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3059--80799658402310010134677517888775327788777369564033000024555545589999974245
Q gi|255764515|r 148 AWES--ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDC 225 (458)
Q Consensus 148 ~~~~--~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (458)
..-+ ..+++||||=- .|.+ ..+||.+. .. ...
T Consensus 178 ~~l~~~~qRIGLSATV~--~~~~---varfL~g~------------------~~-----------------------~~~ 211 (814)
T COG1201 178 RELAGDFQRIGLSATVG--PPEE---VAKFLVGF------------------GD-----------------------PCE 211 (814)
T ss_pred HHHCCCCEEEEEHHCCC--CHHH---HHHHHCCC------------------CC-----------------------CEE
T ss_conf 85175537975402158--8899---99985478------------------98-----------------------429
Q ss_pred HHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
Q ss_conf 43320000100100110003452453689988899999985103345202234788887542035410002234300013
Q gi|255764515|r 226 CLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH 305 (458)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~ 305 (458)
+..... ..+..+...++-. ...... ...
T Consensus 212 Iv~~~~------~k~~~i~v~~p~~--~~~~~~--------------------------------------------~~~ 239 (814)
T COG1201 212 IVDVSA------AKKLEIKVISPVE--DLIYDE--------------------------------------------ELW 239 (814)
T ss_pred EEECCC------CCCCEEEEEECCC--CCCCCC--------------------------------------------CHH
T ss_conf 997456------7753179980477--500026--------------------------------------------246
Q ss_pred CCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHCC-----------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCC
Q ss_conf 433332566541248840342223678886641000-----------265334458998764245885589984422111
Q gi|255764515|r 306 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 374 (458)
Q Consensus 306 ~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~~~-----------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~ 374 (458)
...++.+.+++++.. ..+||+|.....+.+...+ ++..+.+.|..+-++|.+|+.++++|| .+...
T Consensus 240 ~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T-SSLEL 316 (814)
T COG1201 240 AALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT-SSLEL 316 (814)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CCHHH
T ss_conf 789999999996168--589997272789999999987268755653166657789999999866886299980-64220
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHH
Q ss_conf 62200178599990899898686445666620220203787752899998589968999
Q gi|255764515|r 375 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433 (458)
Q Consensus 375 GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i 433 (458)
|||.- .-+.||++..|-+.+.+.|++||.- ||.|.... .++++.+ .|+.+
T Consensus 317 GIDiG-~vdlVIq~~SP~sV~r~lQRiGRsg----Hr~~~~Sk---g~ii~~~-r~dll 366 (814)
T COG1201 317 GIDIG-DIDLVIQLGSPKSVNRFLQRIGRAG----HRLGEVSK---GIIIAED-RDDLL 366 (814)
T ss_pred CCCCC-CCEEEEEECCCHHHHHHHHHCCCCC----CCCCCCCC---EEEEECC-HHHHH
T ss_conf 50247-7429998179388888868503146----65688642---7998167-99999
No 40
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=4.7e-22 Score=151.82 Aligned_cols=309 Identities=18% Similarity=0.240 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHHHHHCC-----C-CCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 478999999999679809995889986899-999999999759-----9-949999160465699999999855888815
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVS-VLTALSYIHLWG-----E-KSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~-al~~~~~l~~~~-----~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
-|-|.+++=-++..+..+-.+++|+|||+. .|-++.++..+. . ..+||+||+.-+..|-.+|+.+|.....++
T Consensus 206 TPIQ~qaIPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~~~~~~~~ir 285 (602)
T PTZ00110 206 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQALQFGRSSKLK 285 (602)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 98999998798569867998789788999999999999851634367899769997383999999999999971547854
Q ss_pred EEEEECC-HH-HHHHHHCCCCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 9998589-78-98887307798699806420233442-000113220440453100246543115677776654305980
Q gi|255764515|r 77 ISVITGT-VK-QRTKVLKTPAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER 153 (458)
Q Consensus 77 ~~~~~g~-~~-~r~~~~~~~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~ 153 (458)
+..+.|. +. .-...+....+|+|.|...+-.+.+. ......-..+|+|||-+|-+.+- ..-.+.|.......+.
T Consensus 286 ~~~i~GG~~~~~Q~~~L~~G~dIvVATPGRLiDlL~~~~~~L~~v~yLVLDEADRMLDmGF---e~qI~~Il~~i~pdRQ 362 (602)
T PTZ00110 286 NSVAYGGVPKRFQTYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGF---EPQIRKIVSQIRPDRQ 362 (602)
T ss_pred EEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEEECHHHHHCCCC---HHHHHHHHHHCCCCCE
T ss_conf 9999799687999998716999999792389999964998743102899875776635462---9999999985897877
Q ss_pred EEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79965840231001013467751788877532778877736956403300002455554558999997424543320000
Q gi|255764515|r 154 FIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIAD 233 (458)
Q Consensus 154 ~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 233 (458)
.++.|||- +..+.+ +...++... +..+.+...+
T Consensus 363 TlLFSAT~-p~~V~~--------------------LA~~~L~~~--------------------------Pv~I~Vg~~~ 395 (602)
T PTZ00110 363 TLMWSATW-PKEVQS--------------------LARDLCKEE--------------------------PVHVNVGSLD 395 (602)
T ss_pred EEEEECCC-CHHHHH--------------------HHHHHHCCC--------------------------CEEEEECCCC
T ss_conf 99995589-989999--------------------999982069--------------------------8899936888
Q ss_pred CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHH
Q ss_conf 10010011000345245368998889999998510334520223478888754203541000223430001343333256
Q gi|255764515|r 234 YQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313 (458)
Q Consensus 234 ~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~ 313 (458)
+....-+...+... ....|...|.
T Consensus 396 ---~~a~~~I~Q~v~vv-----------------------------------------------------~~~eK~~~L~ 419 (602)
T PTZ00110 396 ---LTTCHNIKQEVFVI-----------------------------------------------------EEHEKRAKLK 419 (602)
T ss_pred ---CCCCCCCEEEEEEE-----------------------------------------------------CHHHHHHHHH
T ss_conf ---77778705899996-----------------------------------------------------5188999999
Q ss_pred HHHHC-CCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCC
Q ss_conf 65412-488403422236788866410----------0026533445899876424588558998442211162200178
Q gi|255764515|r 314 VIIEK-ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 382 (458)
Q Consensus 314 ~il~~-~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~ 382 (458)
.++.+ ..+.++||||+.+...+.+.. .++++.+..+|..++++|++++.+|||+| +.++=|||+.. -
T Consensus 420 ~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~~~G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVAT-DVAARGLDI~d-V 497 (602)
T PTZ00110 420 ELLGQIMDGGKILIFSETKKGADTLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIMIAT-DVASRGLDVRD-V 497 (602)
T ss_pred HHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCCCCCCC-C
T ss_conf 999852789968999297389999999998679957982088999999999999976999889882-22331555157-9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 599990899898686445666620220203787752899998589
Q gi|255764515|r 383 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 383 ~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
++||+||+|-++..+.-|+||-. |.|.+ =..|-|++++
T Consensus 498 ~~VINYD~P~~~edYVHRIGRTG-----RAG~k--G~A~TF~Tpd 535 (602)
T PTZ00110 498 KYVINFDFPNQIEDYVHRIGRTG-----RAGAK--GASYTFLTPD 535 (602)
T ss_pred CEEEEECCCCCCCCCCCCCCCCC-----CCCCC--EEEEEEECCC
T ss_conf 87999589798022101356150-----68993--1699997777
No 41
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=159.58 Aligned_cols=168 Identities=23% Similarity=0.191 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8747899999999-967980999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWI-LDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~-~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
+|+|+|.+++... .++++.+++.++|+|||++|+.++..-...+..+++.|||..-+.++=.+|+.+|. ..+++|...
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLE-ELGIRVGIS 109 (766)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHH-HCCCEEEEE
T ss_conf 7557899874111257986799767888669999999999998559838999075999999999866688-659779996
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC-CCCCCEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 5897898887307798699806420233442000-113220440453100246-54311567777665430598079965
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG-TWPFATIVVDESTKLKSF-RLRQGSKTARALAKPAWESERFIELT 158 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~-~~~~~~iIiDEaH~lkn~-~~~~~s~~~~~l~~~~~~~~~~l~LT 158 (458)
+|+..... .+...++|+|+|||++..+.+.... ....++||+||.|.+... ++.........+.... ...+.++||
T Consensus 110 TgD~~~~~-~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-~~~rivgLS 187 (766)
T COG1204 110 TGDYDLDD-ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-ELIRIVGLS 187 (766)
T ss_pred CCCCCCCH-HHHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCCEEHHHHHHHHHHC-CCEEEEEEE
T ss_conf 48865553-3414588799746786676506753334016899942101487565864022798888527-551798873
Q ss_pred CCCHHHHCCCHHHHHHHCC
Q ss_conf 8402310010134677517
Q gi|255764515|r 159 GTPSPNGLIDLWGQIWFLD 177 (458)
Q Consensus 159 gTPi~n~~~el~~ll~~l~ 177 (458)
|| ++| +.|+ ..||+
T Consensus 188 AT-lpN-~~ev---A~wL~ 201 (766)
T COG1204 188 AT-LPN-AEEV---ADWLN 201 (766)
T ss_pred EE-CCC-HHHH---HHHHC
T ss_conf 11-688-8999---99858
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.92 E-value=2e-22 Score=154.07 Aligned_cols=314 Identities=16% Similarity=0.237 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHH-----CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 874789999999996-----79-809995889986899999999999759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILD-----HK-RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~-----~~-~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|-+=|..+|.-+.. .+ +-||-.|||+|||+.|+.++......| ..+..+||+.++..|..+.+.+|++..++
T Consensus 307 ~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~G-YQ~ALMAPTEiLA~QHy~~~~~~l~p~~~ 385 (721)
T TIGR00643 307 ELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESG-YQVALMAPTEILAEQHYDSLRNLLAPLGI 385 (721)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77677899999999861478753222110106638999999999998469-80999177689999999999996235485
Q ss_pred EEEEEECCHHH--HHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 59998589789--888----730779869980642023344200011322044045310024654311567777665430
Q gi|255764515|r 76 NISVITGTVKQ--RTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 76 ~~~~~~g~~~~--r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.+..++|+-+. |.. +-.+..+++|=|+-.+. +.-......+|||||=|++ +..||.+...|...
T Consensus 386 ~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiq----e~vef~~L~lVIiDEQHRF------GV~QR~~L~~KG~~ 455 (721)
T TIGR00643 386 EVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQ----EKVEFKRLGLVIIDEQHRF------GVEQRKKLREKGQE 455 (721)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHH----HHHHHHCCCEEEEECCCCC------HHHHHHHHHHHHHC
T ss_conf 7888615667878999999986395205733135545----2144314774899323356------07899999986220
Q ss_pred C-----CCEEEEECCCCHHHHCC-CHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5-----98079965840231001-01346775178887753277887773695640330000245555455899999742
Q gi|255764515|r 150 E-----SERFIELTGTPSPNGLI-DLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLS 223 (458)
Q Consensus 150 ~-----~~~~l~LTgTPi~n~~~-el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (458)
. .+++|.||||||+-.+- -+|+=
T Consensus 456 ~~~~G~~PH~L~MtATPIPRTLALt~yGD--------------------------------------------------- 484 (721)
T TIGR00643 456 GSMIGFAPHVLVMTATPIPRTLALTVYGD--------------------------------------------------- 484 (721)
T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHC---------------------------------------------------
T ss_conf 68867777764663788147899776500---------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCC--CCCEEEEEEECCHH---HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 454332000010010--01100034524536---8998889999998510334520223478888754203541000223
Q gi|255764515|r 224 DCCLSLDIADYQNID--KPILITKKVPLPQP---VMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEE 298 (458)
Q Consensus 224 ~~~~~~~~~~~~~l~--~~~~~~~~v~l~~~---~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~ 298 (458)
...+-.-++| +.++.+..+.-... .-+.|+...+++... ....- + .|.
T Consensus 485 -----ld~S~I~elP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~G---rQaYv------------v--~Pl----- 537 (721)
T TIGR00643 485 -----LDVSIIDELPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKG---RQAYV------------V--YPL----- 537 (721)
T ss_pred -----CEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCC---CCEEE------------E--ECC-----
T ss_conf -----00334316854593389988842788775689999999998328---90899------------9--644-----
Q ss_pred CCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHH-HHHHHC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCC
Q ss_conf 430001343333256654124884034222367888-664100-026533445899876424588558998442211162
Q gi|255764515|r 299 KHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDL-ARLQKA-FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 376 (458)
Q Consensus 299 ~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~-~~i~~~-~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gl 376 (458)
...|++++-+....+. |...+... ..+... +++-.+.++++++++.|.+++++|||+| .+.-+|+
T Consensus 538 ----I~ESE~lp~lk~A~~~--------~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~ILVsT-TVIEVGV 604 (721)
T TIGR00643 538 ----IEESEKLPDLKAAEAL--------YERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVST-TVIEVGV 604 (721)
T ss_pred ----CCCCCCCCHHHHHHHH--------HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEE-EEEEEEE
T ss_conf ----0320047168999999--------99988861221001133068984789999998521583699997-6899986
Q ss_pred CCCCCCCEEEEECCC-CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 200178599990899-89868644566662022020378775289999858
Q gi|255764515|r 377 NLQYGGNILVFFSLW-WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 377 nL~~a~~~iI~~~~~-wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
|...| +++|.++.. +=-+.+.|-.||+- |-.-+..| .|+++
T Consensus 605 DVPnA-tvMVIe~AeRFGLSQLHQLRGRVG-----RG~~~SyC---~L~~k 646 (721)
T TIGR00643 605 DVPNA-TVMVIEDAERFGLSQLHQLRGRVG-----RGDHQSYC---LLVYK 646 (721)
T ss_pred ECCCC-CEEEEECCCHHHHHHHHHHCEEEC-----CCCCCCEE---EEECC
T ss_conf 17977-278886655103688876350012-----68975079---98125
No 43
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=3.5e-21 Score=146.59 Aligned_cols=295 Identities=17% Similarity=0.248 Sum_probs=182.4
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160-4656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.++|.|.+++..+++.+-.+..+++|.|||+.= -+-.+.. .+.+|||.|. +|+.+| ...+.. .++....+
T Consensus 25 ~Fr~~Q~e~i~~~l~g~D~l~~mpTG~GKSlcy--QlPal~~--~g~tiVisPLisLm~DQ-v~~L~~----~gi~a~~l 95 (607)
T PRK11057 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCY--QIPALVL--DGLTLVVSPLISLMKDQ-VDQLLA----NGVAAACL 95 (607)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHHHHC--CCCEEEECCHHHHHHHH-HHHHHH----CCCCEEEE
T ss_conf 345769999999986998899878995597999--9999877--99889986879999999-999997----89929995
Q ss_pred ECC--HHHHHH----HHCCCCCEEEECCCCHHHHH-HHCCCCCCCCEEECCCCCCCCCCCC-CCHHHHHHHHHHHHH--C
Q ss_conf 589--789888----73077986998064202334-4200011322044045310024654-311567777665430--5
Q gi|255764515|r 81 TGT--VKQRTK----VLKTPAVLYVINFENLGWLV-QELKGTWPFATIVVDESTKLKSFRL-RQGSKTARALAKPAW--E 150 (458)
Q Consensus 81 ~g~--~~~r~~----~~~~~~~i~i~s~e~~~~~~-~~~~~~~~~~~iIiDEaH~lkn~~~-~~~s~~~~~l~~~~~--~ 150 (458)
.++ ..++.. +..+...++.++.|.+.... .+.....+..+++|||||.+..++- -+.+ ++.+..+.. .
T Consensus 96 ~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcvs~WGhdFRp~--Y~~l~~l~~~~~ 173 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPE--YAALGQLRQRFP 173 (607)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCHHH--HHHHHHHHHHCC
T ss_conf 699999999999999975998799988558569789999971886648853066675415500388--999999999769
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002455554558999997424543320
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLD 230 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (458)
..-+++||||-.+.--.|+..+|.+-+|....+
T Consensus 174 ~~p~~AlTATAt~~v~~di~~~L~l~~~~~~~~----------------------------------------------- 206 (607)
T PRK11057 174 TLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------------------------------------------- 206 (607)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEC-----------------------------------------------
T ss_conf 997489996368789999999708999807825-----------------------------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 00010010011000345245368998889999998510334520223478888754203541000223430001343333
Q gi|255764515|r 231 IADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 310 (458)
Q Consensus 231 ~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~ 310 (458)
...+|.+....++-. .+.+
T Consensus 207 -----~f~RpNl~~~v~~~~--------------------------------------------------------~~~~ 225 (607)
T PRK11057 207 -----SFDRPNIRYMLMEKF--------------------------------------------------------KPLD 225 (607)
T ss_pred -----CCCCCCCEEEEEECC--------------------------------------------------------CHHH
T ss_conf -----778887414555447--------------------------------------------------------7399
Q ss_pred CHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 25665412488403422236788866410----------00265334458998764245885589984422111622001
Q gi|255764515|r 311 ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 311 ~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
.+.+.++...++.-||||......+.+.. .++.|.+.++|....+.|.+++.+|++++ .|-|.|||-..
T Consensus 226 ~~~~~~~~~~~~sgIIYc~trk~~e~la~~L~~~G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT-~AFGMGIdk~d 304 (607)
T PRK11057 226 QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT-VAFGMGINKPN 304 (607)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHCCCCCCC
T ss_conf 99999870689977999692899999999998579754530589997899999998756887589975-01105767777
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 785999908998986864456666202202037877528999
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
.+.|||+++|-|...+.|=+||. .|.|+...|..+|
T Consensus 305 -VR~ViH~~~P~s~e~yyQE~GRA-----GRDG~~a~c~l~y 340 (607)
T PRK11057 305 -VRFVVHFDIPRNIESYYQETGRA-----GRDGLPAEAMLFY 340 (607)
T ss_pred -CCEEEECCCCCCHHHHHHHHHHC-----CCCCCCCEEEEEE
T ss_conf -66799778999999999988635-----2589854189985
No 44
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.90 E-value=2e-22 Score=154.08 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCC-CEEE
Q ss_conf 8747899999999967-980999588998689999999999975-999499991604656999999998558888-1599
Q gi|255764515|r 2 NLAPHQTKIVDWILDH-KRCAIWASMGSGKTVSVLTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSH-MNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~-~~~ll~~~~G~GKT~~al~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~-~~~~ 78 (458)
.++|||.+++.++.+. +.+++.++||+|||++++..+...... ...++||++|...+..||.+++.++..... ....
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99988999999998389988998999960999999999998633899759999085999999998860102102044556
Q ss_pred EEECCH-H-HHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 985897-8-988873077986998064202334420-0011322044045310024654311567777665430598079
Q gi|255764515|r 79 VITGTV-K-QRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 79 ~~~g~~-~-~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
.+.|.. . ..........+++++|++.+....... ....+|++||+||||++.+. ...... ..+.....+..+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~--~~~~~~-~~~~~~~~~~~~~i 164 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG--GFGDQL-EKLLKLLPKNVQLL 164 (201)
T ss_pred EECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCC--CCHHHH-HHHHHHCCCCCCEE
T ss_conf 524773799999997599989995589999999727545254319999896775125--709999-99999679999789
Q ss_pred EECCCCHH
Q ss_conf 96584023
Q gi|255764515|r 156 ELTGTPSP 163 (458)
Q Consensus 156 ~LTgTPi~ 163 (458)
+|||||..
T Consensus 165 ~lSAT~~~ 172 (201)
T smart00487 165 LLSATPPE 172 (201)
T ss_pred EECCCCCH
T ss_conf 99248986
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=2.2e-20 Score=141.67 Aligned_cols=307 Identities=17% Similarity=0.252 Sum_probs=173.5
Q ss_pred CCCHHHHHHHHHHHHC-----C-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8747899999999967-----9-809995889986899999999999759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILDH-----K-RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~-----~-~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|-+-|..+++-+... + +-||..|||+|||+.|+.++......| ..+.++||+.++..|....+.++....++
T Consensus 257 ~LT~~Q~~~~~ei~~dl~~~~~m~rllqGDVGsGKT~va~~a~~~~~~~g-~q~a~maPTeiLa~Qh~~~~~~~~~~~~i 335 (677)
T PRK10917 257 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-YQAALMAPTEILAEQHYRNLKKWLEPLGI 335 (677)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 88988999999999876599542777328767888999999999999819-94899876799999999999987763498
Q ss_pred EEEEEECCHH--HHHHH----HCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5999858978--98887----30779869980642023344200011322044045310024654311567777665430
Q gi|255764515|r 76 NISVITGTVK--QRTKV----LKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 76 ~~~~~~g~~~--~r~~~----~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
++..++|+.+ .+..+ -.+..+++|-|+-.+... ....+-.++|+||-|++ +..++.....+.
T Consensus 336 ~v~lltg~~~~~~~~~~~~~~~~g~~~i~iGTHal~~~~----v~f~~LglvviDEQHrF------GV~QR~~l~~k~-- 403 (677)
T PRK10917 336 RVALLTGSLKGKERREILEALASGEADIVIGTHALIQDD----VEFHNLGLVIIDEQHRF------GVHQRLALREKG-- 403 (677)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHCC----CCCCCCCEEEECHHHHH------HHHHHHHHHHCC--
T ss_conf 899840774177899999998579977897307877355----64466656995305776------399999998439--
Q ss_pred CCCEEEEECCCCHHHHCC-CHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 598079965840231001-0134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 150 ESERFIELTGTPSPNGLI-DLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 150 ~~~~~l~LTgTPi~n~~~-el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
..++.+.||||||+-.+. -+|+-+++-
T Consensus 404 ~~~~~L~mtATPIPRtla~~~~g~~d~s---------------------------------------------------- 431 (677)
T PRK10917 404 ENPHVLVMTATPIPRTLAMTAYGDLDVS---------------------------------------------------- 431 (677)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEE----------------------------------------------------
T ss_conf 9972999836884388999873576666----------------------------------------------------
Q ss_pred HHCCCCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 20000100100--1100034524536899888999999851033452022347888875420354100022343000134
Q gi|255764515|r 229 LDIADYQNIDK--PILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 306 (458)
Q Consensus 229 ~~~~~~~~l~~--~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~ 306 (458)
-..++|+ ..+.+..+.. ....+.|+.+.++... +.... +. +|.. ++ |
T Consensus 432 ----~i~~~P~~r~~i~T~~~~~-~~~~~~~~~i~~~~~~---g~q~y-------------~v-~p~i-ee--------s 480 (677)
T PRK10917 432 ----VIDELPPGRKPITTVVIPD-SRRDEVYERIREEIAK---GRQAY-------------VV-CPLI-EE--------S 480 (677)
T ss_pred ----ECCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHHHC---CCEEE-------------EE-ECCC-CC--------C
T ss_conf ----6677999998726999762-5689999999999975---99289-------------99-4131-12--------3
Q ss_pred CCCC--CHHH---HH-HCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 3333--2566---54-1248840342223678886641000265334458998764245885589984422111622001
Q gi|255764515|r 307 EKIK--ALEV---II-EKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 307 ~k~~--~l~~---il-~~~~~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
++++ .+.+ .+ +...+.++- .+++.++.+++..++++|.+|+.+||+++ ....+|+|...
T Consensus 481 e~~~~~~~~~~~~~l~~~~~~~~v~--------------~~hG~m~~~ek~~~m~~F~~g~~~iLvsT-tviEvGvdvpn 545 (677)
T PRK10917 481 EKLDLQSAEETYEELQKALPELRVG--------------LLHGRMKPAEKDAVMAAFKAGEIDILVAT-TVIEVGVDVPN 545 (677)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEE--------------EECCCCCHHHHHHHHHHHHCCCCCEEEEC-CEEECCCCCCC
T ss_conf 3201777999999998448997599--------------83078987899999999983999999989-89755867888
Q ss_pred CCCEEEEECC-CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCC
Q ss_conf 7859999089-98986864456666202202037877528999985899
Q gi|255764515|r 381 GGNILVFFSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 428 (458)
Q Consensus 381 a~~~iI~~~~-~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~t 428 (458)
| +++|..+. -+-.+.+.|-.||+- |-+.+. ++| |++.+.
T Consensus 546 a-~~mvi~~aerfGlsqLhQLRGRVg-----Rg~~~~--~c~-l~~~~~ 585 (677)
T PRK10917 546 A-TVMVIENAERFGLAQLHQLRGRVG-----RGAAQS--YCV-LLYKDP 585 (677)
T ss_pred C-CEEEEECCCCCCHHHHHHHCCCCC-----CCCCCE--EEE-EEECCC
T ss_conf 8-589997701053678877427436-----788845--899-983899
No 46
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.1e-20 Score=139.04 Aligned_cols=324 Identities=17% Similarity=0.236 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHH--CCCCC-EEEEECCHHHHHHHHHHHHHHCCCC-CCE
Q ss_conf 874789999999996798099958899868999-999999997--59994-9999160465699999999855888-815
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHL--WGEKS-VLVIAPLRVAQSVWTSEVQRWSNFS-HMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~--~~~~~-~LIv~P~~l~~~~W~~Ei~kf~~~~-~~~ 76 (458)
+.-|.|..++-.++..+..+..+.+|+|||+.= |-.+..+.. ..... +||++|+.-+..|-.+++.++.... .+.
T Consensus 51 ~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~ 130 (513)
T COG0513 51 EPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLR 130 (513)
T ss_pred CCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 98989996587763699979986898717899999999997400455777569977999999999999999986245842
Q ss_pred EEEEECC-H-HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 9998589-7-8988873077986998064202334420-00113220440453100246543115677776654305980
Q gi|255764515|r 77 ISVITGT-V-KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER 153 (458)
Q Consensus 77 ~~~~~g~-~-~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~ 153 (458)
+..+.|. + ......+....+++|.|.-.+-.+.... +.......+|+|||-++-+.+- ..-...+.........
T Consensus 131 ~~~i~GG~~~~~q~~~l~~g~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmld~gf---~~~i~~I~~~~p~~~q 207 (513)
T COG0513 131 VAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGF---IDDIEKILKALPPDRQ 207 (513)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEECCHHHHCCCCC---HHHHHHHHHHCCCCCE
T ss_conf 9999899898999998724998999796089999864885546501899676176638876---8999999973897748
Q ss_pred EEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79965840231001013467751788877532778877736956403300002455554558999997424543320000
Q gi|255764515|r 154 FIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIAD 233 (458)
Q Consensus 154 ~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 233 (458)
.++-|||.-. .. ..+..++... +..+.+....
T Consensus 208 tllfSAT~~~-~i--------------------~~l~~~~l~~---------------------------p~~i~v~~~~ 239 (513)
T COG0513 208 TLLFSATMPD-DI--------------------RELARRYLND---------------------------PVEIEVSVEK 239 (513)
T ss_pred EEEEEECCCH-HH--------------------HHHHHHHCCC---------------------------CCEEEECCCC
T ss_conf 9999824898-99--------------------9999997368---------------------------8079964322
Q ss_pred CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHH
Q ss_conf 10010011000345245368998889999998510334520223478888754203541000223430001343333256
Q gi|255764515|r 234 YQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313 (458)
Q Consensus 234 ~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~ 313 (458)
... ....+....+... ....|++.|.
T Consensus 240 ~~~-~~~~i~q~~~~v~-----------------------------------------------------~~~~k~~~L~ 265 (513)
T COG0513 240 LER-TLKKIKQFYLEVE-----------------------------------------------------SEEEKLELLL 265 (513)
T ss_pred CCC-CCCCCEEEEEEEC-----------------------------------------------------CHHHHHHHHH
T ss_conf 335-3004707999808-----------------------------------------------------5677999999
Q ss_pred HHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCC
Q ss_conf 65412488403422236788866410----------00265334458998764245885589984422111622001785
Q gi|255764515|r 314 VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 383 (458)
Q Consensus 314 ~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~ 383 (458)
.+++.....++||||+-+...+.+.. .++++.+.++|...++.|++|+.+|||+| ++++-||++.. -+
T Consensus 266 ~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGiDi~~-v~ 343 (513)
T COG0513 266 KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-DVAARGLDIPD-VS 343 (513)
T ss_pred HHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCCCCCC-CC
T ss_conf 99827888839999576776999999999789659997388998899999999975998989980-65446899666-74
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 384 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 384 ~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
+||+||+|.++..+..++||-. |.|.+ -..+-|+++ .-|...+..+++.
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTg-----RaG~~--G~ai~fv~~-~~e~~~l~~i~~~ 392 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTG-----RAGRK--GVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred EEEECCCCCCCCCCCCCCCCCC-----CCCCC--CEEEEEECC-HHHHHHHHHHHHH
T ss_conf 7997879998041317345343-----48998--727998556-2349999999998
No 47
>KOG0331 consensus
Probab=99.89 E-value=2.9e-20 Score=141.03 Aligned_cols=322 Identities=18% Similarity=0.259 Sum_probs=190.1
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHH------CC-CCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 74789999999996798099958899868999-999999997------59-99499991604656999999998558888
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHL------WG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~------~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
.-|-|..+.-.+++.+.++..+.+|+|||+.= |-++.++.. .+ ...+||++|+.-+.+|-++++.+|.....
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~ 193 (519)
T KOG0331 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLR 193 (519)
T ss_pred CCHHHHCCCCEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 85344144651126886577823578620555557999987004443479998699976859999999999999707777
Q ss_pred CEEEEEEC-CHHH-HHHHHCCCCCEEEECCCCHHHHHHHCC-CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 15999858-9789-888730779869980642023344200-01132204404531002465431156777766543059
Q gi|255764515|r 75 MNISVITG-TVKQ-RTKVLKTPAVLYVINFENLGWLVQELK-GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES 151 (458)
Q Consensus 75 ~~~~~~~g-~~~~-r~~~~~~~~~i~i~s~e~~~~~~~~~~-~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~ 151 (458)
++..+++| .++. -...+....+|+|.|...+..+.+.-. .......+|+|||-++-..+- ..+.-+.+..+....
T Consensus 194 ~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGF--e~qI~~Il~~i~~~~ 271 (519)
T KOG0331 194 LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGF--EPQIRKILSQIPRPD 271 (519)
T ss_pred CCEEEEECCCCCCHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCC--HHHHHHHHHHCCCCC
T ss_conf 407998689886378898755981898077178999974885645303999634776631353--799999987558975
Q ss_pred CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 80799658402310010134677517888775327788777369564033000024555545589999974245433200
Q gi|255764515|r 152 ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDI 231 (458)
Q Consensus 152 ~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (458)
...++-|||= |.+. ..+...|..
T Consensus 272 rQtlm~saTw----p~~v-----------------~~lA~~fl~------------------------------------ 294 (519)
T KOG0331 272 RQTLMFSATW----PKEV-----------------RQLAEDFLN------------------------------------ 294 (519)
T ss_pred CCEEEEEEEC----CHHH-----------------HHHHHHHHC------------------------------------
T ss_conf 2278886546----4889-----------------999999845------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEECC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 0010010011000345245-368998889999998510334520223478888754203541000223430001343333
Q gi|255764515|r 232 ADYQNIDKPILITKKVPLP-QPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 310 (458)
Q Consensus 232 ~~~~~l~~~~~~~~~v~l~-~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~ 310 (458)
-|. .+... ....++-... .++ ...... .+|..
T Consensus 295 -----~~~------~i~ig~~~~~~a~~~i-----~qi----ve~~~~---------------------------~~K~~ 327 (519)
T KOG0331 295 -----NPI------QINVGNKKELKANHNI-----RQI----VEVCDE---------------------------TAKLR 327 (519)
T ss_pred -----CCE------EEEECCHHHHHHHCCH-----HHH----HHHCCH---------------------------HHHHH
T ss_conf -----964------8996121455443331-----465----112687---------------------------88988
Q ss_pred CHHHHHH---CCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 2566541---2488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 311 ALEVIIE---KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 311 ~l~~il~---~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
.+..++. ...+.|+||||+.+...+.+.. .++++.+..+|...++.|.+|+.+||+++ +.++-||+
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-dVAaRGLD 406 (519)
T KOG0331 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-DVAARGLD 406 (519)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEEC-CCCCCCCC
T ss_conf 79999999735689868999643364999998877517661550066648899999975026885469881-53125688
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC--CHHHHHHHHHHH
Q ss_conf 00178599990899898686445666620220203787752899998589--968999999999
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN--TIDELVLQRLRT 439 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~--tide~i~~~~~~ 439 (458)
+.. -++||+||+|-|...+..++||=- |.|++ -..|-|++.. .+...+++.+.+
T Consensus 407 i~d-V~lVInydfP~~vEdYVHRiGRTG-----Ra~~~--G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331 407 VPD-VDLVINYDFPNNVEDYVHRIGRTG-----RAGKK--GTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred CCC-CCEEEECCCCCCHHHHHHHCCCCC-----CCCCC--CEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 766-647996789999899886537654-----57888--248999727887778999999997
No 48
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.88 E-value=1.1e-19 Score=137.39 Aligned_cols=327 Identities=16% Similarity=0.182 Sum_probs=187.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCC--CCEEE
Q ss_conf 874789999999996798099958899868999-999999997599949999160465699999999855888--81599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFS--HMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~--~~~~~ 78 (458)
+||+||.+|.+.+.+.++.++.-+||+|||..- +.++..+......+.|+|-|.+.+.+--.+.+.+|.... .+++.
T Consensus 70 ~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~ 149 (851)
T COG1205 70 RLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFG 149 (851)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 20077999999997799889978998854589899999998308665089980437767669999999998478751354
Q ss_pred EEECCH--HHHHHHHCCCCCEEEECCCCHHHHH-H----HCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--
Q ss_conf 985897--8988873077986998064202334-4----200011322044045310024654311567777665430--
Q gi|255764515|r 79 VITGTV--KQRTKVLKTPAVLYVINFENLGWLV-Q----ELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW-- 149 (458)
Q Consensus 79 ~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~-~----~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~-- 149 (458)
.++|+. .++..+.....+|++|||+++.... . .......+.+||+||+|..+...++..+-..|.+.....
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~ 229 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRY 229 (851)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHCCCEEEEECCEECCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 43488967888998738997898388999898636882278887327589984441215603788999999999997245
Q ss_pred -CCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -5980799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 150 -ESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 150 -~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
..+..++.|||- . +|.| |...+........ ......
T Consensus 230 ~~~~q~i~~SAT~-~-np~e--------------------~~~~l~~~~f~~~-------v~~~g~-------------- 266 (851)
T COG1205 230 GSPLQIICTSATL-A-NPGE--------------------FAEELFGRDFEVP-------VDEDGS-------------- 266 (851)
T ss_pred CCCCEEEEEECCC-C-CHHH--------------------HHHHHCCCCCEEE-------CCCCCC--------------
T ss_conf 8996289983124-6-8288--------------------9998628721463-------147888--------------
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
|.. .....+..++....... ..+..
T Consensus 267 ---------~~~-~~~~~~~~p~~~~~~~~-~r~s~-------------------------------------------- 291 (851)
T COG1205 267 ---------PRG-LRYFVRREPPIRELAES-IRRSA-------------------------------------------- 291 (851)
T ss_pred ---------CCC-CEEEEEECCCCHHHHHH-CCCCH--------------------------------------------
T ss_conf ---------878-74899856851133221-12345--------------------------------------------
Q ss_pred CCCHHHHHH--CCCCCEEEEHHHHHHHHHHHH------------------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 332566541--248840342223678886641------------------000265334458998764245885589984
Q gi|255764515|r 309 IKALEVIIE--KANAAPIIVAYHFNSDLARLQ------------------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAH 368 (458)
Q Consensus 309 ~~~l~~il~--~~~~~kviif~~~~~~~~~i~------------------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s 368 (458)
...+..++. -.++-+.++|+.....+..+. ..+.+|....+|.++...|++|+..+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~s- 370 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIA- 370 (851)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-
T ss_conf 7799999999987696599998357567887541578875406010331342336699999999999974688417861-
Q ss_pred HHHCCCCCCCCCCCCEEEEECCCC-CHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf 422111622001785999908998-9868644566662022020378775289999858996899999
Q gi|255764515|r 369 PASCGHGLNLQYGGNILVFFSLWW-DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 435 (458)
Q Consensus 369 ~~~~~~GlnL~~a~~~iI~~~~~w-n~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~ 435 (458)
+.|.-.|+++.. -..+|.+..|- +...++|+.||. .|.||.-.+.+ ..-.+.+|...+.
T Consensus 371 t~AlelgidiG~-ldavi~~g~P~~s~~~~~Q~~GRa-----GR~~~~~l~~~--v~~~~~~d~yy~~ 430 (851)
T COG1205 371 TNALELGIDIGS-LDAVIAYGYPGVSVLSFRQRAGRA-----GRRGQESLVLV--VLRSDPLDSYYLR 430 (851)
T ss_pred CHHHCCCEEECC-EEEEEECCCCCCHHHHHHHHHCCC-----CCCCCCCEEEE--EECCCCCCHHHHH
T ss_conf 210122656702-114530488970288898861103-----58878753799--8378840044550
No 49
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=2.6e-21 Score=147.37 Aligned_cols=349 Identities=15% Similarity=0.163 Sum_probs=182.3
Q ss_pred CCCCHHHHHHHHHHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9874789999999996-----79809995889986899999999999759-99499991604656999999998558888
Q gi|255764515|r 1 MNLAPHQTKIVDWILD-----HKRCAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~-----~~~~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
+-+|+||..|+..+.+ +++.||++.+|+|||.+|++++..|...+ .+++|-++-...+.+|=..++++|.+...
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCHHHEEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf 36227889999999999866874489997058885231999999999614143056761267899999999996398864
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHC-C-----CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 15999858978988873077986998064202334420-0-----01132204404531002465431156777766543
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQEL-K-----GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~-----~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
. +..+.+. .....+.+++.+|+++....... . ..-.||+||+||||+= ..+..+.+.-.
T Consensus 244 ~-~n~i~~~------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg-------i~~~~~~I~dY- 308 (875)
T COG4096 244 K-MNKIEDK------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG-------IYSEWSSILDY- 308 (875)
T ss_pred C-EEEECCC------CCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHH-------HHHHHHHHHHH-
T ss_conf 0-1232014------6786305887603778756406545655678883128996066666-------78766789889-
Q ss_pred HCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05980799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 149 WESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
-+...++|||||-..--.+-|.+++ |.+ ...|.-......-+. .++..+.
T Consensus 309 -FdA~~~gLTATP~~~~d~~T~~~F~----g~P-----------------------t~~YsleeAV~DG~L--vpy~vi~ 358 (875)
T COG4096 309 -FDAATQGLTATPKETIDRSTYGFFN----GEP-----------------------TYAYSLEEAVEDGFL--VPYKVIR 358 (875)
T ss_pred -HHHHHHHHCCCCCCCCCCCCCCCCC----CCC-----------------------CEEECHHHHHHCCCC--CCCCCEE
T ss_conf -9998876125762111323101337----970-----------------------224128888521545--7886337
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
+.. ..+..-. ..-.++ +..+... +.+.+ .+...... .++............
T Consensus 359 i~~----~~~~~G~--~~~~~s-erek~~g----~~i~~-dd~~~~~~-----------------d~dr~~v~~~~~~~V 409 (875)
T COG4096 359 IDT----DFDLDGW--KPDAGS-EREKLQG----EAIDE-DDQNFEAR-----------------DFDRTLVIPFRTETV 409 (875)
T ss_pred EEE----ECCCCCC--CCCCCC-HHHHHHC----CCCCC-CCCCCCCC-----------------CCCHHEECCCHHHHH
T ss_conf 664----3156674--767552-3233313----43686-54463335-----------------532000031247899
Q ss_pred CCCHHHHHHC--CC--CCEEEEHHHHHHHHHHHHH----CCCCCC---------CHHHHHHHHHHH-CCCCCCEEEEEHH
Q ss_conf 3325665412--48--8403422236788866410----002653---------344589987642-4588558998442
Q gi|255764515|r 309 IKALEVIIEK--AN--AAPIIVAYHFNSDLARLQK----AFPQGR---------TLDKDPCTIQEW-NEGKIPLLFAHPA 370 (458)
Q Consensus 309 ~~~l~~il~~--~~--~~kviif~~~~~~~~~i~~----~~~~g~---------~~~~r~~~i~~f-~~~~~~vli~s~~ 370 (458)
...+.+.+++ .. -.|-||||......+.+.. .+.+.. ..++-+..|+.| .+.+.+.+.+|.+
T Consensus 410 ~r~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~Iaitvd 489 (875)
T COG4096 410 ARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVD 489 (875)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEHH
T ss_conf 99999984256688866845899627078999999998748010674599984440656899998874378983587612
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHH--CCCCCC-EEEEEEE
Q ss_conf 21116220017859999089989868644566662022020--378775-2899998
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ--AGFKRA-VFVYYLI 424 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR--~Gq~~~-v~v~~li 424 (458)
-..+|+|....|| ++|+-.--|-..++|.+||..|.+-.- .||.|. ..|+.++
T Consensus 490 lL~TGiDvpev~n-lVF~r~V~SktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 490 LLTTGVDVPEVVN-LVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HHHCCCCCHHEEE-EEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHH
T ss_conf 4542787622045-6431444668999998667654370116865663069998721
No 50
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.88 E-value=5.2e-20 Score=139.44 Aligned_cols=309 Identities=17% Similarity=0.258 Sum_probs=175.6
Q ss_pred CCCHHHHHHHHHHHHC---C---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8747899999999967---9---809995889986899999999999759994999916046569999999985588881
Q gi|255764515|r 2 NLAPHQTKIVDWILDH---K---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~---~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
+|--.|..+++-+... + +-||-.|+|+|||+.|+.++......| ..+..++|+.++..|-...+.+|++.-++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~i 340 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLGI 340 (677)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76789999999998664486666787526767778999999999998728-81688663799999999999987665197
Q ss_pred EEEEEECCH--HHHHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 599985897--89888----730779869980642023344200011322044045310024654311567777665430
Q gi|255764515|r 76 NISVITGTV--KQRTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 76 ~~~~~~g~~--~~r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.+.+++|+- +.|.. +.++..+++|-|+-.+. +.-...+..+||+||-|++ ...+|.+...+...
T Consensus 341 ~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRF------GV~QR~~L~~KG~~ 410 (677)
T COG1200 341 RVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRF------GVHQRLALREKGEQ 410 (677)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHH----CCEEECCEEEEEEECCCCC------CHHHHHHHHHHCCC
T ss_conf 4898644665067999999874799897997221220----4504420238997252102------29999999973789
Q ss_pred CCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59807996584023100101346775178887753277887773695640330000245555455899999742454332
Q gi|255764515|r 150 ESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSL 229 (458)
Q Consensus 150 ~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (458)
.++.+.||||||+-.+. +--|=|.
T Consensus 411 -~Ph~LvMTATPIPRTLA----lt~fgDl--------------------------------------------------- 434 (677)
T COG1200 411 -NPHVLVMTATPIPRTLA----LTAFGDL--------------------------------------------------- 434 (677)
T ss_pred -CCCEEEEECCCCHHHHH----HHHHCCC---------------------------------------------------
T ss_conf -99679995798507889----8886146---------------------------------------------------
Q ss_pred HCCCCCCCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
Q ss_conf 0000100100--11000345245368998889999998510334520223478888754203541000223430001343
Q gi|255764515|r 230 DIADYQNIDK--PILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDE 307 (458)
Q Consensus 230 ~~~~~~~l~~--~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~ 307 (458)
..+-.-++|+ .++.+..++. ..-.+.|+.+..+.. .+.... .-+|.. + .|+
T Consensus 435 dvS~IdElP~GRkpI~T~~i~~-~~~~~v~e~i~~ei~---~GrQaY--------------~VcPLI-e--------eSE 487 (677)
T COG1200 435 DVSIIDELPPGRKPITTVVIPH-ERRPEVYERIREEIA---KGRQAY--------------VVCPLI-E--------ESE 487 (677)
T ss_pred CCHHHCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHHH---CCCEEE--------------EEECCC-C--------CCC
T ss_conf 3011125798997408999644-447999999999997---499799--------------995253-5--------433
Q ss_pred CCC--CHHHHHH----CCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf 333--2566541----2488403422236788866410002653344589987642458855899844221116220017
Q gi|255764515|r 308 KIK--ALEVIIE----KANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 381 (458)
Q Consensus 308 k~~--~l~~il~----~~~~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a 381 (458)
+++ ...++-+ ...+.++ .-+++-++.++.++++++|++|+.+||+++ .+..+|+|...|
T Consensus 488 ~l~l~~a~~~~~~L~~~~~~~~v--------------gL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT-TVIEVGVdVPnA 552 (677)
T COG1200 488 KLELQAAEELYEELKSFLPELKV--------------GLVHGRMKPAEKDAVMEAFKEGEIDILVAT-TVIEVGVDVPNA 552 (677)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEE--------------EEEECCCCHHHHHHHHHHHHCCCCCEEEEE-EEEEECCCCCCC
T ss_conf 11365499999999987054636--------------777568986779999999980887689981-389952357887
Q ss_pred CCEEEEECC-CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCC
Q ss_conf 859999089-98986864456666202202037877528999985899
Q gi|255764515|r 382 GNILVFFSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 428 (458)
Q Consensus 382 ~~~iI~~~~-~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~t 428 (458)
+++|..+. =+-.+.+.|-.||+ .|-+.+..| + |++...
T Consensus 553 -TvMVIe~AERFGLaQLHQLRGRV-----GRG~~qSyC--~-Ll~~~~ 591 (677)
T COG1200 553 -TVMVIENAERFGLAQLHQLRGRV-----GRGDLQSYC--V-LLYKPP 591 (677)
T ss_pred -EEEEEECHHHHHHHHHHHHCCCC-----CCCCCCEEE--E-EEECCC
T ss_conf -07999654330378888752655-----788754489--9-996798
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.85 E-value=3.6e-18 Score=128.33 Aligned_cols=148 Identities=19% Similarity=0.293 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHH---CC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 4789999999996---79---8099958899868999999999997599949999160465699999999-855888815
Q gi|255764515|r 4 APHQTKIVDWILD---HK---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQ-RWSNFSHMN 76 (458)
Q Consensus 4 ~p~Q~~~v~~~~~---~~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~-kf~~~~~~~ 76 (458)
-|=|..|++-+++ .+ --|+|.|||-|||=.|+-++..-- ...+.+.|+||+.++..|..+.|. +|.++ +++
T Consensus 602 T~DQl~AI~eV~~DMes~~PMDRLiCGDVGfGKTEVA~RAAFkav-~~gkQVavlvPTTiLA~QH~~tF~~Rf~~~-pv~ 679 (1148)
T PRK10689 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-ENHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVR 679 (1148)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHHHHCC-CCE
T ss_conf 768999999998776388677415676888877999999999999-639808998366223799999999876415-733
Q ss_pred EEEEEC--CHHHHHHH----HCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999858--97898887----307798699806420233442000113220440453100246543115677776654305
Q gi|255764515|r 77 ISVITG--TVKQRTKV----LKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 77 ~~~~~g--~~~~r~~~----~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
+..++. +.++...+ -.+.-+|+|-|+-.+.... ...+-.+|||||=|++ +-+-...+.++. .
T Consensus 680 i~~LsRf~s~ke~~~i~~~l~~G~idIvIGTH~ll~~dv----~f~~LGLlIiDEEqrF-------GV~~KE~lk~l~-~ 747 (1148)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV----KWKDLGLLIVDEEHRF-------GVRHKERIKAMR-A 747 (1148)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHCCCC----CCCCCCEEEECCCHHC-------CHHHHHHHHHCC-C
T ss_conf 775038888999999999986699877620488866986----5466643786010213-------799999997228-9
Q ss_pred CCEEEEECCCCHHHH
Q ss_conf 980799658402310
Q gi|255764515|r 151 SERFIELTGTPSPNG 165 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~ 165 (458)
.-.++-||||||+-.
T Consensus 748 ~vdvLtltATPIPRT 762 (1148)
T PRK10689 748 DVDILTLTATPIPRT 762 (1148)
T ss_pred CCCEEEEECCCCHHH
T ss_conf 987897625564469
No 52
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=99.85 E-value=7.3e-21 Score=144.62 Aligned_cols=101 Identities=25% Similarity=0.363 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98747899999999967980999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
|+|||||.++++.+.+++++++..++|+|||++++.++..+... ..++|||||...+.+||.++|
T Consensus 2 ~~LR~yQ~~a~~~~~~~~~~~i~~pTGsGKT~~~~~~i~~~~~~-~~~~lvlvp~~~L~~Q~~~~~-------------- 66 (103)
T pfam04851 2 LELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAAKLIARLLKG-KKKVLFLVPRKDLLEQALEEF-------------- 66 (103)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHH--------------
T ss_conf 98729999999999963986999589998799999999999846-992999908299999999965--------------
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 58978988873077986998064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
+||+||||+... ....+.+.. ..+..++++||||
T Consensus 67 ---------------------------------------lii~DE~H~~~a------~~~~~~l~~-~~~~~~~lGlTAT 100 (103)
T pfam04851 67 ---------------------------------------VIIIDEAHHSSA------KTKYRKILE-YFKPAFLLGLTAT 100 (103)
T ss_pred ---------------------------------------HHHHHHHHHCCC------HHHHHHHHH-HCCCCEEEEEEEC
T ss_conf ---------------------------------------646016352353------789999999-5772608998008
Q ss_pred CH
Q ss_conf 02
Q gi|255764515|r 161 PS 162 (458)
Q Consensus 161 Pi 162 (458)
|.
T Consensus 101 P~ 102 (103)
T pfam04851 101 PE 102 (103)
T ss_pred CC
T ss_conf 88
No 53
>KOG0330 consensus
Probab=99.85 E-value=9.3e-19 Score=131.88 Aligned_cols=316 Identities=16% Similarity=0.196 Sum_probs=197.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7478999999999679809995889986899-9999999997599-9499991604656999999998558888159998
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVS-VLTALSYIHLWGE-KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~-al~~~~~l~~~~~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.-+-|.+|+-..++++-++.+.++|+|||.. +|-++..|...+. ..+||++|+.-+..|-...|+.+...-++++.++
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~l 163 (476)
T KOG0330 84 PTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVL 163 (476)
T ss_pred CCHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 74444520655437985799943588840231799999997198774489964828999999999987535667279998
Q ss_pred ECCHH-HH-HHHHCCCCCEEEECCCCHHHHHHHC--CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 58978-98-8873077986998064202334420--00113220440453100246543115677776654305980799
Q gi|255764515|r 81 TGTVK-QR-TKVLKTPAVLYVINFENLGWLVQEL--KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 81 ~g~~~-~r-~~~~~~~~~i~i~s~e~~~~~~~~~--~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~ 156 (458)
.|... .. ...+...-+++|.|...+....+.. .....-..+|+|||-++-|..- ......+.+..+.-...++
T Consensus 164 vGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF---~~~ld~ILk~ip~erqt~L 240 (476)
T KOG0330 164 VGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDF---EEELDYILKVIPRERQTFL 240 (476)
T ss_pred ECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHH---HHHHHHHHHHCCCCCEEEE
T ss_conf 6583299998876248987983707899998743684088757876331776621156---8999999874674414899
Q ss_pred ECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 65840231001013467751788877532778877736956403300002455554558999997424543320000100
Q gi|255764515|r 157 LTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQN 236 (458)
Q Consensus 157 LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 236 (458)
.|||...+ ... +.+ . .
T Consensus 241 fsATMt~k-v~k-------------------------------------------------L~r--------a------s 256 (476)
T KOG0330 241 FSATMTKK-VRK-------------------------------------------------LQR--------A------S 256 (476)
T ss_pred EEEECCHH-HHH-------------------------------------------------HHH--------H------C
T ss_conf 98644413-677-------------------------------------------------876--------4------1
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 10011000345245368998889999998510334520223478888754203541000223430001343333256654
Q gi|255764515|r 237 IDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 316 (458)
Q Consensus 237 l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il 316 (458)
+..|. .+.-+. -....+.+. ..+..+.. .-|-..|..++
T Consensus 257 l~~p~----~v~~s~-ky~tv~~lk-Q~ylfv~~-----------------------------------k~K~~yLV~ll 295 (476)
T KOG0330 257 LDNPV----KVAVSS-KYQTVDHLK-QTYLFVPG-----------------------------------KDKDTYLVYLL 295 (476)
T ss_pred CCCCE----EEECCC-HHCCHHHHH-HHEEECCC-----------------------------------CCCCHHHHHHH
T ss_conf 58971----786043-011167766-45576326-----------------------------------66652389988
Q ss_pred HCCCCCEEEEHHHHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEE
Q ss_conf 1248840342223678886641----------000265334458998764245885589984422111622001785999
Q gi|255764515|r 317 EKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 386 (458)
Q Consensus 317 ~~~~~~kviif~~~~~~~~~i~----------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI 386 (458)
.+..|..+||||+.-.....+. -.+++.++..+|-...+.|+++...||+|+ +.|+-|||.++. ++||
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T-DVaSRGLDip~V-d~VV 373 (476)
T KOG0330 296 NELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT-DVASRGLDIPHV-DVVV 373 (476)
T ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEC-CHHCCCCCCCCC-EEEE
T ss_conf 76359847999834640899999998627643205660357788778998751477679861-301046898771-0799
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 908998986864456666202202037877528999985899689999999
Q gi|255764515|r 387 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 437 (458)
Q Consensus 387 ~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~ 437 (458)
+||.|-+..++.-+.||.. |-| +.-.++-||+. .|-..++++
T Consensus 374 NyDiP~~skDYIHRvGRta-----RaG--rsG~~ItlVtq--yDve~~qrI 415 (476)
T KOG0330 374 NYDIPTHSKDYIHRVGRTA-----RAG--RSGKAITLVTQ--YDVELVQRI 415 (476)
T ss_pred ECCCCCCHHHHHHHCCCCC-----CCC--CCCCEEEEEEH--HHHHHHHHH
T ss_conf 5378983788888704300-----167--77514898744--556999999
No 54
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=99.84 E-value=9.1e-19 Score=131.94 Aligned_cols=299 Identities=19% Similarity=0.282 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHH-C--CC---EEEEECCCCCHHHHHHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHH-HHHCCCCC
Q ss_conf 789999999996-7--98---099958899868999999999997599---94999916046569999999-98558888
Q gi|255764515|r 5 PHQTKIVDWILD-H--KR---CAIWASMGSGKTVSVLTALSYIHLWGE---KSVLVIAPLRVAQSVWTSEV-QRWSNFSH 74 (458)
Q Consensus 5 p~Q~~~v~~~~~-~--~~---~ll~~~~G~GKT~~al~~~~~l~~~~~---~~~LIv~P~~l~~~~W~~Ei-~kf~~~~~ 74 (458)
|=|..|++-+.. . .+ -|||.|||-|||=+|+-|+-..-..|+ +.|.|+||+.++.+|-.+.| +||.++ +
T Consensus 511 ~DQ~~AI~eik~Dm~~~~~MDRL~CGDVGfGKTEVAmRAaFkAv~~gneylKQVavLVPTT~LA~QHf~tf~~RF~~f-P 589 (997)
T TIGR00580 511 PDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGNEYLKQVAVLVPTTILAQQHFETFKERFANF-P 589 (997)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEECEEEEECCHHHHHHHHHHHHHHHHCCC-C
T ss_conf 789999999999740689873465245488536888878887633878220116896270442777889999973789-8
Q ss_pred CEEEEEECCH--HHHHHH----HCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1599985897--898887----3077986998064202334420001132204404531002465431156777766543
Q gi|255764515|r 75 MNISVITGTV--KQRTKV----LKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 75 ~~~~~~~g~~--~~r~~~----~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
+++..++.-. ++..++ -.+.-+|+|=|+-.+.... ...+-+||||||=|++ +-+-...|..+.
T Consensus 590 v~I~~LSRF~~~~E~~~iL~~la~G~iDI~IGTH~lL~k~v----~FKdLGLlIiDEEQRF-------GV~~KE~lK~~~ 658 (997)
T TIGR00580 590 VTIELLSRFRSAKEKKEILKELASGKIDILIGTHKLLQKDV----KFKDLGLLIIDEEQRF-------GVKQKEKLKELK 658 (997)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHCCCE----EEECCCCEEEECCCCC-------CCCHHHHHCCCC
T ss_conf 16875277567378999999975594226630104127854----6863864698314348-------831155530015
Q ss_pred HCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05980799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 149 WESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
..-.+|-||||||+-.+ .|++. -++ + +.-
T Consensus 659 -~~VDvLtlsATPIPRTL-----~MSl~----------------------------------------g~R----d-lS~ 687 (997)
T TIGR00580 659 -TSVDVLTLSATPIPRTL-----HMSLS----------------------------------------GIR----D-LSI 687 (997)
T ss_pred -CCCCEEEEECCCCHHHH-----HHHHH----------------------------------------HHH----H-HHH
T ss_conf -67656763378960558-----99987----------------------------------------553----3-221
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
+..++...+| +.+...+.++...+. .+++++.. .|+-.-. .++
T Consensus 688 I~TPP~~R~p---v~T~v~~~~~~~~~~--AI~rEL~R--gGQvFyv------------------------------~Nr 730 (997)
T TIGR00580 688 IATPPEDRLP---VRTFVMEYDDELVRE--AIRRELLR--GGQVFYV------------------------------HNR 730 (997)
T ss_pred CCCCCCCCCC---EEEEEECCCHHHHHH--HHHHHHCC--CCEEEEE------------------------------ECC
T ss_conf 0578887742---488774278689999--99975313--9818998------------------------------088
Q ss_pred CCCH---HHHHHCC-CCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCE
Q ss_conf 3325---6654124-88403422236788866410002653344589987642458855899844221116220017859
Q gi|255764515|r 309 IKAL---EVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI 384 (458)
Q Consensus 309 ~~~l---~~il~~~-~~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~ 384 (458)
++-+ ..-+++. +..+|-| .++-++.++-..++.+|.+++.+||||| .-.-.|||+..| |+
T Consensus 731 ie~i~~~~~~l~~LVP~arIai--------------aHGqM~e~eLE~~m~~F~~~~~~vLvcT-TIIE~GIDIPnA-NT 794 (997)
T TIGR00580 731 IESIEKLKTQLRELVPEARIAI--------------AHGQMTENELEEVMLEFYKGEFDVLVCT-TIIESGIDIPNA-NT 794 (997)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE--------------EECCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCHHHH-HH
T ss_conf 1357899999985084326788--------------8335684568999998626843301322-146505641001-26
Q ss_pred EE-EECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 99-9089989868644566662022020378775289999858
Q gi|255764515|r 385 LV-FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 385 iI-~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
+| +-=-.+=.+.+.|-.||+= |++ +.-|+|.|+..
T Consensus 795 iIi~~AD~FGLaQLYQLRGRVG--Rs~-----~~AYAYlL~~~ 830 (997)
T TIGR00580 795 IIIDRADKFGLAQLYQLRGRVG--RSK-----KKAYAYLLYPH 830 (997)
T ss_pred HHHHHHCCCCHHHHHHCCCEEC--CCC-----CEEEEEECCCC
T ss_conf 8687521147034745363120--587-----12689833477
No 55
>COG4889 Predicted helicase [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=136.37 Aligned_cols=154 Identities=16% Similarity=0.252 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCE
Q ss_conf 874789999999996----798099958899868999999999997599949999160-465699999999855888815
Q gi|255764515|r 2 NLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
++||||.+|++..++ |.||-|-+.+|+|||+++|-+++.+-. .++|.++|. +++. |= +..|+....+.
T Consensus 161 k~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLs-QT---lrew~~~~~l~ 233 (1518)
T COG4889 161 KPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLS-QT---LREWTAQKELD 233 (1518)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHH---HHEEEECCHHHHHH-HH---HHHHHHCCCCC
T ss_conf 9983678999999862551667758983378862137889999864---02365435189999-99---99885346655
Q ss_pred EE---EEECCHHH------------------HHH--------HHCCCCCEEEECCCCHHHHHHHCC-CCCCCCEEECCCC
Q ss_conf 99---98589789------------------888--------730779869980642023344200-0113220440453
Q gi|255764515|r 77 IS---VITGTVKQ------------------RTK--------VLKTPAVLYVINFENLGWLVQELK-GTWPFATIVVDES 126 (458)
Q Consensus 77 ~~---~~~g~~~~------------------r~~--------~~~~~~~i~i~s~e~~~~~~~~~~-~~~~~~~iIiDEa 126 (458)
+. +-+.+.-. ... .......|+.++|+++-...+.-. ...+||+||||||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred CEEEEEECCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEECCH
T ss_conf 12578863652344412321204788875749999999987533378389997021148789999749997537974400
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 1002465--43115677776654305980799658402
Q gi|255764515|r 127 TKLKSFR--LRQGSKTARALAKPAWESERFIELTGTPS 162 (458)
Q Consensus 127 H~lkn~~--~~~~s~~~~~l~~~~~~~~~~l~LTgTPi 162 (458)
|+--... +...|...+.-.....++.+|+-|||||-
T Consensus 314 HRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 314 HRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred HCCCCCEECCCCCCCCEEECCCCCHHHHHHHHCCCCCH
T ss_conf 01446232257720104533764158887666006860
No 56
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=2.7e-17 Score=122.98 Aligned_cols=148 Identities=20% Similarity=0.289 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHH---CC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 4789999999996---79---8099958899868999999999997599949999160465699999999-855888815
Q gi|255764515|r 4 APHQTKIVDWILD---HK---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQ-RWSNFSHMN 76 (458)
Q Consensus 4 ~p~Q~~~v~~~~~---~~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~-kf~~~~~~~ 76 (458)
-|=|..|++-+++ .+ --|++.|+|-|||=.|+-++-..-. +.+.+-|+||+.++.+|..+-|. +|.++ +++
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~GKQVAvLVPTTlLA~QHy~tFkeRF~~f-PV~ 673 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DGKQVAVLVPTTLLAQQHYETFKERFAGF-PVR 673 (1139)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHHHCCC-CEE
T ss_conf 8789999999998860698661025657687599999999999863-79749999260786899899999873389-825
Q ss_pred EEEEEC--CHHHHHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999858--9789888----7307798699806420233442000113220440453100246543115677776654305
Q gi|255764515|r 77 ISVITG--TVKQRTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 77 ~~~~~g--~~~~r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
+.+++- +.++... .-.+.-+|+|-|+-.+....+ ..+-.++||||=|++ +-+-...+..+. .
T Consensus 674 I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~----FkdLGLlIIDEEqRF-------GVk~KEkLK~Lr-~ 741 (1139)
T COG1197 674 IEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK----FKDLGLLIIDEEQRF-------GVKHKEKLKELR-A 741 (1139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCE----EECCCEEEEECHHHC-------CCCHHHHHHHHH-C
T ss_conf 8886055788999999999856984589963176478967----704764897443532-------711789998775-0
Q ss_pred CCEEEEECCCCHHHH
Q ss_conf 980799658402310
Q gi|255764515|r 151 SERFIELTGTPSPNG 165 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~ 165 (458)
.-.++-||||||+-.
T Consensus 742 ~VDvLTLSATPIPRT 756 (1139)
T COG1197 742 NVDVLTLSATPIPRT 756 (1139)
T ss_pred CCCEEEEECCCCCCH
T ss_conf 572897417887544
No 57
>KOG0952 consensus
Probab=99.82 E-value=1.8e-17 Score=124.09 Aligned_cols=341 Identities=16% Similarity=0.153 Sum_probs=162.7
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHC---------CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
Q ss_conf 67980999588998689999999999975---------999499991604656999999998558888159998589789
Q gi|255764515|r 16 DHKRCAIWASMGSGKTVSVLTALSYIHLW---------GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQ 86 (458)
Q Consensus 16 ~~~~~ll~~~~G~GKT~~al~~~~~l~~~---------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~ 86 (458)
.+.++++++++|+|||..|+-.+..+..+ +.-+++.|+|...+...-.+-+.+=+..-++.|.-++|+...
T Consensus 125 SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql 204 (1230)
T KOG0952 125 SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQL 204 (1230)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf 78877997778997167899999999985014554346871399992568899999999866424246258884175456
Q ss_pred HHHHHCCCCCEEEECCCCHHHHHH------HCCCCCCCCEEECCCCCCCCCCCCCCHHH-HHHHH--HHHHHCCCEEEEE
Q ss_conf 888730779869980642023344------20001132204404531002465431156-77776--6543059807996
Q gi|255764515|r 87 RTKVLKTPAVLYVINFENLGWLVQ------ELKGTWPFATIVVDESTKLKSFRLRQGSK-TARAL--AKPAWESERFIEL 157 (458)
Q Consensus 87 r~~~~~~~~~i~i~s~e~~~~~~~------~~~~~~~~~~iIiDEaH~lkn~~~~~~s~-~~~~l--~~~~~~~~~~l~L 157 (458)
.... -.+.+++|+|.|+..-.-+ .+.. ...+||+||.|.+...++..-.. .+|.+ ....++.-|.++|
T Consensus 205 ~~te-i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgL 281 (1230)
T KOG0952 205 TKTE-IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGL 281 (1230)
T ss_pred HHHH-HHHCCEEEECCCCEEEEEEEECCCHHHHH--HEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 6778-77437797063400046654126265555--42048853001215766406999999999998854200578886
Q ss_pred CCCCHHHHCCCHHHHHHHCC--CCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 58402310010134677517--8887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 158 TGTPSPNGLIDLWGQIWFLD--KGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 158 TgTPi~n~~~el~~ll~~l~--~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
||| ++| ..|+ ..||. |...++.+-..|+.-.......+.... .........+........+..
T Consensus 282 SAT-lPN-~eDv---A~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~----------~~~~~~~~~d~~~~~kv~e~~ 346 (1230)
T KOG0952 282 SAT-LPN-YEDV---ARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK----------KNRQQKKNIDEVCYDKVVEFL 346 (1230)
T ss_pred ECC-CCC-HHHH---HHHHCCCCCCCEEEECCCCCCCCEEEEEEEEECC----------CCHHHHHHHHHHHHHHHHHHH
T ss_conf 245-787-7999---9986678756626520232034311168742124----------420024667778999999999
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf 01001100034524536899888999999851033452022347888875420354100022343000134333325665
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 315 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~i 315 (458)
.--.+. -+.|....+..+.-..+.. ..+.+.. .....++++.+.+.++
T Consensus 347 ~~g~qV--lvFvhsR~~Ti~tA~~l~~----------------------~a~~~g~--------~~~f~~~~~~k~l~el 394 (1230)
T KOG0952 347 QEGHQV--LVFVHSRNETIRTAKKLRE----------------------RAETNGE--------KDLFLPSPRNKQLKEL 394 (1230)
T ss_pred HCCCEE--EEEEECCHHHHHHHHHHHH----------------------HHHHCCC--------CCCCCCCHHHHHHHHH
T ss_conf 749859--9999657489999999999----------------------9886286--------5656788366789999
Q ss_pred HHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 41248840342223678886641000265334458998764245885589984422111622001785999908998986
Q gi|255764515|r 316 IEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE 395 (458)
Q Consensus 316 l~~~~~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~ 395 (458)
....-+ .-+.|.....|...-+.|.+|..+||.|+ .+.+.|+||+ |-.++|.-...|++.
T Consensus 395 f~~g~~------------------iHhAGm~r~DR~l~E~~F~~G~i~vL~cT-aTLAwGVNLP-A~aViIKGT~~ydss 454 (1230)
T KOG0952 395 FQQGMG------------------IHHAGMLRSDRQLVEKEFKEGHIKVLCCT-ATLAWGVNLP-AYAVIIKGTQVYDSS 454 (1230)
T ss_pred HHHHHH------------------HCCCCCCHHHHHHHHHHHHCCCCEEEEEC-CEEEECCCCC-CEEEEECCCCCCCCC
T ss_conf 874010------------------20256431468999999855982289961-2133125776-418986487411356
Q ss_pred ----------HHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHH
Q ss_conf ----------864456666202202037877528999985899689
Q gi|255764515|r 396 ----------EHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDE 431 (458)
Q Consensus 396 ----------~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide 431 (458)
+..|..||. .|.+-.+.-..+-+.+.+.+|-
T Consensus 455 kg~f~dlgilDVlQifGRA-----GRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952 455 KGSFVDLGILDVLQIFGRA-----GRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred CCCEEEEHHHHHHHHHHCC-----CCCCCCCCCEEEEEECCCHHHH
T ss_conf 6843540288889987206-----8998777762899966507989
No 58
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=99.82 E-value=4.2e-18 Score=127.89 Aligned_cols=324 Identities=18% Similarity=0.242 Sum_probs=201.0
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160-4656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
+.||-|.+.|+.++..+.++..+|||=||++. .=+-.|...| -++||.|- ||+.+| ++.+.. -++....+
T Consensus 13 ~FR~gQe~II~~vL~g~~~l~vmPTGGGKSlC--YQ~PALll~G--lt~VISPLIsLMkDQ-Vd~L~~----~Gv~Aa~l 83 (607)
T TIGR01389 13 DFRGGQEEIIEHVLDGRDVLVVMPTGGGKSLC--YQVPALLLKG--LTVVISPLISLMKDQ-VDQLRA----AGVAAAYL 83 (607)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHH--HHHHHHHHCC--CEEEECCHHHHHHHH-HHHHHH----CCCEEEEE
T ss_conf 67731589999984779858973899851277--7217887289--879984236314779-999986----07014520
Q ss_pred EC--CHHHHHHHHC----CCCCEEEECCCCHHH-HHHHCCCCCCCCEEECCCCCCCCCCC--CCCHHHHHHHHHHHHHCC
Q ss_conf 58--9789888730----779869980642023-34420001132204404531002465--431156777766543059
Q gi|255764515|r 81 TG--TVKQRTKVLK----TPAVLYVINFENLGW-LVQELKGTWPFATIVVDESTKLKSFR--LRQGSKTARALAKPAWES 151 (458)
Q Consensus 81 ~g--~~~~r~~~~~----~~~~i~i~s~e~~~~-~~~~~~~~~~~~~iIiDEaH~lkn~~--~~~~s~~~~~l~~~~~~~ 151 (458)
.. +.++...++. +.-+++=+.+|-+.. .....+...+.+||-|||||-+.=|+ =....+..-.+....++.
T Consensus 84 NSt~s~~E~~~i~~~~~~G~~~LLYvAPERL~~~~Fl~~L~~~~i~L~AvDEAHCvSQWGHDFRPeY~~L~~l~~~fp~~ 163 (607)
T TIGR01389 84 NSTLSAKEQQEIEKALVNGELKLLYVAPERLEQDYFLNMLKRLTIALLAVDEAHCVSQWGHDFRPEYRRLGELAERFPQV 163 (607)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 37788889999999984198157751671321189998873199308998325021668888756589999999867898
Q ss_pred CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 80799658402310010134677517888775327788777369564033000024555545589999974245433200
Q gi|255764515|r 152 ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDI 231 (458)
Q Consensus 152 ~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (458)
+-+++||||--..--.|+-..|++-++.. |.+-+
T Consensus 164 P~~iALTATAd~~t~~DI~~~L~L~~~~~--------f~~SF-------------------------------------- 197 (607)
T TIGR01389 164 PTRIALTATADAETRQDIVELLRLKDANE--------FISSF-------------------------------------- 197 (607)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCCC--------CCCCC--------------------------------------
T ss_conf 66998724899878999999708898654--------12567--------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 00100100110003452453689988899999985103345202234788887542035410002234300013433332
Q gi|255764515|r 232 ADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 311 (458)
Q Consensus 232 ~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~ 311 (458)
.+|.+ .|. .....++.+-
T Consensus 198 ------dRpNl-------------~~~-------------------------------------------v~~k~n~~~~ 215 (607)
T TIGR01389 198 ------DRPNL-------------RFS-------------------------------------------VVKKNNKKKF 215 (607)
T ss_pred ------CCHHH-------------HHH-------------------------------------------HHHHCCCCHH
T ss_conf ------75114-------------334-------------------------------------------3120378136
Q ss_pred HHHHHHCC-CCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 56654124-884034222367888664100----------0265334458998764245885589984422111622001
Q gi|255764515|r 312 LEVIIEKA-NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 312 l~~il~~~-~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
+.+.+... +|..=||||.-...++.+.+. |+.|.+.+.|.+..+.|...+..|+++| -|-|.|||= .
T Consensus 216 l~~yl~~~~~G~SGIIYa~sR~~VE~~~~~L~s~G~~A~~YHAGL~~~~R~e~Q~~Fl~d~~~vmVAT-~AFGMGIdK-p 293 (607)
T TIGR01389 216 LLEYLKKHREGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVAT-NAFGMGIDK-P 293 (607)
T ss_pred HHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE-ECCCCCCCC-C
T ss_conf 89997507999534787677045899999997479620403679877689999754446255488887-123587478-7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE-E---------EECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 785999908998986864456666202202037877528999-9---------85899689999999999999999985
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY-L---------IAQNTIDELVLQRLRTKSTIQDLLLN 449 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~-l---------i~~~tide~i~~~~~~K~~~~~~~~~ 449 (458)
-.+.|||+|+|-|-..+.|=-||. -|.|++..+-..| . |.....++..=++-.+|.+-+-+..+
T Consensus 294 nVRFViH~d~P~~~EsYYQE~GRA-----GRDGlpae~~lly~~~D~~l~~~~I~~s~~~~~~K~~e~~KL~~m~~y~~ 367 (607)
T TIGR01389 294 NVRFVIHADMPKNIESYYQEAGRA-----GRDGLPAEAILLYSLADIALLKRFIEQSEADEDRKQIEREKLDAMLAYCE 367 (607)
T ss_pred CCCEEEEECCCCCHHHHHCCCCCC-----CCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 654888636874211131035546-----88752677867247778999999974158848899999999999999887
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=5.3e-17 Score=121.26 Aligned_cols=300 Identities=19% Similarity=0.235 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160-4656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.++|=|.++++.+++.++++..+++|.||++.-- +-.+.. .+.+|||.|- ||+.+| .+.... .++.+..+
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQ-V~~l~~----~Gi~A~~l 87 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQ-VDQLEA----AGIRAAYL 87 (590)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHH--HHHHHC--CCCEEEECCHHHHHHHH-HHHHHH----CCCEEEHH
T ss_conf 0388889999999658867998538987106743--678865--99789978568889999-999997----59652044
Q ss_pred EC--CHHHHHHHH----CCCCCEEEECCCCHHH-HHHHCCCCCCCCEEECCCCCCCCCCC---CCCHHHHHHHHHHHHHC
Q ss_conf 58--978988873----0779869980642023-34420001132204404531002465---43115677776654305
Q gi|255764515|r 81 TG--TVKQRTKVL----KTPAVLYVINFENLGW-LVQELKGTWPFATIVVDESTKLKSFR---LRQGSKTARALAKPAWE 150 (458)
Q Consensus 81 ~g--~~~~r~~~~----~~~~~i~i~s~e~~~~-~~~~~~~~~~~~~iIiDEaH~lkn~~---~~~~s~~~~~l~~~~~~ 150 (458)
.+ +..++...+ .+..+++-++.|.+.. ...+.+...+..+++|||||-+..++ ...+.+. ..+.....+
T Consensus 88 nS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l-g~l~~~~~~ 166 (590)
T COG0514 88 NSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRL-GRLRAGLPN 166 (590)
T ss_pred HCCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCHHHHHH-HHHHHHCCC
T ss_conf 2436787799999998649645999881363176899999708875699621777764177437768999-999851799
Q ss_pred CCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98079965840231001013467751788877532778877736956403300002455554558999997424543320
Q gi|255764515|r 151 SERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLD 230 (458)
Q Consensus 151 ~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (458)
.-+++||||--+---.|+-.+|..-++... .
T Consensus 167 -~p~~AlTATA~~~v~~DI~~~L~l~~~~~~--------~---------------------------------------- 197 (590)
T COG0514 167 -PPVLALTATATPRVRDDIREQLGLQDANIF--------R---------------------------------------- 197 (590)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHCCCCCCEE--------E----------------------------------------
T ss_conf -977997378986789999998467886648--------7----------------------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 00010010011000345245368998889999998510334520223478888754203541000223430001343333
Q gi|255764515|r 231 IADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK 310 (458)
Q Consensus 231 ~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~ 310 (458)
....+|.+....++.. .....+.
T Consensus 198 ----~sfdRpNi~~~v~~~~-~~~~q~~---------------------------------------------------- 220 (590)
T COG0514 198 ----GSFDRPNLALKVVEKG-EPSDQLA---------------------------------------------------- 220 (590)
T ss_pred ----ECCCCCHHHHHHHHCC-CHHHHHH----------------------------------------------------
T ss_conf ----1589852345564256-4788899----------------------------------------------------
Q ss_pred CHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 25665412488403422236788866410----------00265334458998764245885589984422111622001
Q gi|255764515|r 311 ALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 311 ~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
.+.+ .....+..-||||.-....+.+.+ .|++|.+.++|...-+.|.+++.+|++++ .|-|.|||=..
T Consensus 221 fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT-~AFGMGIdKpd 298 (590)
T COG0514 221 FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT-NAFGMGIDKPD 298 (590)
T ss_pred HHHH-HCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCC
T ss_conf 9874-132468972899933775999999999779725775189889999999999716998689996-46247767888
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 78599990899898686445666620220203787752899998589
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
...||||++|-|...+.|=+||. -|.|.... .+.|..++
T Consensus 299 -VRfViH~~lP~s~EsYyQE~GRA-----GRDG~~a~--aill~~~~ 337 (590)
T COG0514 299 -VRFVIHYDLPGSIESYYQETGRA-----GRDGLPAE--AILLYSPE 337 (590)
T ss_pred -CEEEEEECCCCCHHHHHHHHHHC-----CCCCCCCE--EEEEECCC
T ss_conf -40799806998989999997135-----67877021--78860630
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.80 E-value=3.8e-17 Score=122.08 Aligned_cols=338 Identities=17% Similarity=0.216 Sum_probs=160.8
Q ss_pred EEECCCCCHHHHH-HHHHHHHHHCC-----------CCCEEEEECCH-HHHHHH------HHHH----HHH-CCCCCCEE
Q ss_conf 9958899868999-99999999759-----------99499991604-656999------9999----985-58888159
Q gi|255764515|r 22 IWASMGSGKTVSV-LTALSYIHLWG-----------EKSVLVIAPLR-VAQSVW------TSEV----QRW-SNFSHMNI 77 (458)
Q Consensus 22 l~~~~G~GKT~~a-l~~~~~l~~~~-----------~~~~LIv~P~~-l~~~~W------~~Ei----~kf-~~~~~~~~ 77 (458)
+..++|+|||+.| +.++..|...+ .-++|+|.|-. +..++. -.+| .+. ...+.+.+
T Consensus 1 VvAPTGSGKTLAAFL~aLd~L~~~~~~~~~~~~~~~~~~VLYISPLKALa~Dv~rNL~~PL~gI~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 95988743989999999999996145555556788973899959278889999999987998889999862567899758
Q ss_pred EEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHH----HCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH---H
Q ss_conf 9985897--89888730779869980642023344----2000113220440453100246543115677776654---3
Q gi|255764515|r 78 SVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQ----ELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKP---A 148 (458)
Q Consensus 78 ~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~----~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~---~ 148 (458)
.+-+|+. .+|.......-+|+|||.|++.-+.. +.+. .-..|||||.|.+-+ ++.++...-.+.++ .
T Consensus 81 ~vRtGDT~~~eR~r~~r~PPdILITTPESL~LlLtsk~r~~L~--~v~~VIVDEiHalag--sKRGahLaLsLeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLR--GVETVIIDEVHAVAG--SKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHC--CCCEEEECCCHHHHC--CCCHHHHHHHHHHHHHHC
T ss_conf 6379999999999985089983984889999987356999977--998999628644205--883999999999999865
Q ss_pred HCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05980799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 149 WESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
.....+|+||||= +.+.+ ...||.+.... ....... . +.+ +..+.
T Consensus 157 ~~~~qRIGLSATv--~p~e~---vA~fLgg~rpv------------~IV~~~~-----------~--k~~-----~l~v~ 201 (1490)
T PRK09751 157 HTSAQRIGLSATV--RSASD---VAAFLGGDRPV------------TVVNPPA-----------M--RHP-----QIRIV 201 (1490)
T ss_pred CCCCCEEEEECCC--CCHHH---HHHHHCCCCCE------------EEECCCC-----------C--CCC-----EEEEE
T ss_conf 8999689997766--89999---99873799983------------7868888-----------8--875-----27997
Q ss_pred HHCCCCCCCCCCCEEEE---EEECCHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHHCCCCCCCCCCCCC
Q ss_conf 20000100100110003---452453689-988899999985103345202234788887----5420354100022343
Q gi|255764515|r 229 LDIADYQNIDKPILITK---KVPLPQPVM-KQYHKFQRELYCDLQGENIEAFNSASKTVK----CLQLANGAVYYDEEKH 300 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~---~v~l~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~q~~~~~~~~~~~~~ 300 (458)
....+..+++......- ......... ..+..+.... ... ...+...|.-....+ +.++...-. .....
T Consensus 202 vPv~d~~~~~~~~~~~g~~~~~~~~~siw~~v~~~i~~~i-~~h-rsTLVF~NTR~~AErl~~~L~el~~erl--~~~~~ 277 (1490)
T PRK09751 202 VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV-LRH-RSTIVFTNSRGLAEKLTARLNELYAARL--QRSPS 277 (1490)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHC-CCEEEEECCHHHHHHHHHHHHHHHHHHH--CCCCC
T ss_conf 0466533333235677632235554531678899999999-726-8769997887999999999999999873--24643
Q ss_pred CHHCCCCCCCCHHHHH-HCCCCC-EEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 0001343333256654-124884-03422236788866410002653344589987642458855899844221116220
Q gi|255764515|r 301 WKEVHDEKIKALEVII-EKANAA-PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 301 ~~~~~~~k~~~l~~il-~~~~~~-kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
.... ........... ....+. .+|+ ...+++.++++|..+-+.+++|+.+.+++| .+...|||+
T Consensus 278 ~~~~-~~~~~~~~~~~~~~~~g~~~~ia------------~aHHGSlSke~R~~vE~~LK~G~LraVVaT-SSLELGIDi 343 (1490)
T PRK09751 278 IAVD-AAHFESTSGATSNRVQSSDVFIA------------RSHHGSVSKEQRAITEQALKSGELRCVVAT-SSLELGIDM 343 (1490)
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCHHHCCCC
T ss_conf 2211-00001112222112356654334------------455576899999999999867997789977-805407764
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEE
Q ss_conf 0178599990899898686445666620220203787752899
Q gi|255764515|r 379 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 421 (458)
Q Consensus 379 ~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~ 421 (458)
- .-+.||.+..|-+.+...|++||-- |+.|......++
T Consensus 344 G-~VDlVVQvgsP~sVAs~lQRvGRAG----H~vg~~S~g~~~ 381 (1490)
T PRK09751 344 G-AVDLVIQVATPLSVASGLQRIGRAG----HQVGGVSKGLFF 381 (1490)
T ss_pred C-CCCEEEEECCCHHHHHHHHHHCCCC----CCCCCCCCEEEE
T ss_conf 4-6557998069667889999710125----788984407996
No 61
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=99.80 E-value=6.1e-17 Score=120.87 Aligned_cols=308 Identities=18% Similarity=0.235 Sum_probs=186.1
Q ss_pred CCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 87478999999999679-8099958899868999-999999997599949999160-46569999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHK-RCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~-~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~ 78 (458)
+.+|-|.++|+-.+..+ -+++.++||-||+|.= +.++ .. .+-+|||+|- ||+++| ...++. .++...
T Consensus 11 ~Frp~Q~e~I~~~L~g~RD~~vvMpTG~GKSLCYQ~Pa~---~~--~G~t~VIsPLiSLm~DQ-V~~L~~----~~i~A~ 80 (497)
T TIGR00614 11 SFRPVQLEVINAVLEGRRDCLVVMPTGGGKSLCYQLPAL---YS--DGLTLVISPLISLMEDQ-VLQLKA----SGIPAT 80 (497)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH---HC--CCCEEEECCHHHHHHHH-HHHHHH----CCCCEE
T ss_conf 455148999998754897569981589860367640567---50--89649973636568999-999874----486301
Q ss_pred EEECCHHHH--HH----H--HCCCCCEEEECCCCHHH---HHHHC---CCCCCCCEEECCCCCCCCCCCC--CCHHHHHH
Q ss_conf 985897898--88----7--30779869980642023---34420---0011322044045310024654--31156777
Q gi|255764515|r 79 VITGTVKQR--TK----V--LKTPAVLYVINFENLGW---LVQEL---KGTWPFATIVVDESTKLKSFRL--RQGSKTAR 142 (458)
Q Consensus 79 ~~~g~~~~r--~~----~--~~~~~~i~i~s~e~~~~---~~~~~---~~~~~~~~iIiDEaH~lkn~~~--~~~s~~~~ 142 (458)
.+.++.... .. . ..+...++=+|+|.+.. +...+ -....+.++.|||||-+.-|+= ....+...
T Consensus 81 ~L~s~~s~~~~~~v~~~~~~k~g~~kllYvtPE~~~~~~~ll~~Le~~Y~~~~~~~iAvDEAHCiSqWGHDFR~~Y~~LG 160 (497)
T TIGR00614 81 FLNSSQSKEQQKEVLTDLSKKDGKLKLLYVTPEKISKSKSLLQTLEKLYERKGITLIAVDEAHCISQWGHDFRPDYKALG 160 (497)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHHHHHHHCCCEEEEEECEEEECCCCCCCCHHHHHHH
T ss_conf 04432577899999999873079758997163465346478999999886449669998321543588887407999965
Q ss_pred HHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76654305980799658402310010134677517888775327788777369564033000024555545589999974
Q gi|255764515|r 143 ALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQL 222 (458)
Q Consensus 143 ~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 222 (458)
.|....+..+ +++||||--..=-.|+..+|++.+|.....
T Consensus 161 ~Lk~~fP~vP-~~ALTATA~~~~~~Di~~~L~l~~p~~~~~--------------------------------------- 200 (497)
T TIGR00614 161 SLKQKFPNVP-IMALTATASPSVREDILRILNLKNPQVFIT--------------------------------------- 200 (497)
T ss_pred HHHHHCCCCC-EEEEECCCCHHHHHHHHHHHCCCCCCEEEE---------------------------------------
T ss_conf 7888548874-364340578678999998722136624640---------------------------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 24543320000100100110003452453689988899999985103345202234788887542035410002234300
Q gi|255764515|r 223 SDCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWK 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~ 302 (458)
...+|.+.....+-.....+....+.+-. .. +..
T Consensus 201 -------------SFdRPNl~y~v~~K~~n~~~~~~dl~~f~-~~-------------------~~~------------- 234 (497)
T TIGR00614 201 -------------SFDRPNLYYEVRRKTSNTKKILEDLLRFI-VK-------------------KAS------------- 234 (497)
T ss_pred -------------CCCCCCCEEEEECCCCCHHHHHHHHHHHH-HH-------------------HCC-------------
T ss_conf -------------46687630340057897025899999998-75-------------------203-------------
Q ss_pred HCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHC-CCCCCEEEEEHHH
Q ss_conf 013433332566541248840342223678886641----------00026533445899876424-5885589984422
Q gi|255764515|r 303 EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 371 (458)
Q Consensus 303 ~~~~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~----------~~~~~g~~~~~r~~~i~~f~-~~~~~vli~s~~~ 371 (458)
-..+.+|..-||||.-....+.+. .+|+-|...+.|..+-.+|. ..+++|+++|+ |
T Consensus 235 ------------s~~~~~G~sGIIYC~SR~~~e~~a~~L~~~G~~a~aYHAGl~~~~R~~V~~~f~nrD~~QvVvATv-A 301 (497)
T TIGR00614 235 ------------SAWEFKGKSGIIYCPSRKKSEQVAAELQKLGIAAGAYHAGLEISARKEVQHKFQNRDEIQVVVATV-A 301 (497)
T ss_pred ------------CCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEE-E
T ss_conf ------------565245883027528723489999999755861002402688647789999875038857999872-1
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEE
Q ss_conf 11162200178599990899898686445666620220203787752899998
Q gi|255764515|r 372 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 424 (458)
Q Consensus 372 ~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li 424 (458)
-|.|||=.. -+.||||++|-+-..+-|=.||. -|.|-...|..||=-
T Consensus 302 FGMGInKpd-vRfViH~~~Pk~~EsYYQE~GRA-----GRDgl~s~c~lfy~~ 348 (497)
T TIGR00614 302 FGMGINKPD-VRFVIHYSLPKSMESYYQESGRA-----GRDGLPSECVLFYAP 348 (497)
T ss_pred CCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCC-----CCCCCCCCEEEEECH
T ss_conf 268887635-36788507885621101355556-----789732010233043
No 62
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.79 E-value=2.8e-18 Score=129.02 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=95.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECC--HHHHHHHHCCC
Q ss_conf 98099958899868999999999-9975999499991604656999999998558888159998589--78988873077
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSY-IHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGT--VKQRTKVLKTP 94 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~-l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~--~~~r~~~~~~~ 94 (458)
++.++.++||+|||++++..+.. +.....+++||+||...+.+||.+++.++... ...+....+. ...+.......
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGK 79 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHCCC
T ss_conf 99999889971799999999999997568976999746799999999999997488-71799996136367789874589
Q ss_pred CCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 98699806420233442-00011322044045310024654311567777665430598079965840
Q gi|255764515|r 95 AVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 95 ~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
.+++++|++.+.+.... ......|++||+||||++.+.... ... ..+..........++|||||
T Consensus 80 ~~ilv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~--~~~-~~~~~~~~~~~~~l~lSATp 144 (144)
T cd00046 80 TDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFG--LLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCCCH--HHH-HHHHHHCCCCCCEEEECCCC
T ss_conf 849982889999999738765551009999888876437969--999-99999679999489982899
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.79 E-value=4e-17 Score=121.95 Aligned_cols=312 Identities=17% Similarity=0.216 Sum_probs=177.3
Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 874789999999-996798099958899868999-999999997599949999160465699999999855888815999
Q gi|255764515|r 2 NLAPHQTKIVDW-ILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 2 ~L~p~Q~~~v~~-~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
+|.|-|..+|+. +++..+.++...+++|||+++ +|-+..+. .+.++.|.++|--.+.||=.++|..--..-++++.+
T Consensus 216 eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l-~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglkvai 294 (830)
T COG1202 216 ELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL-SGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAI 294 (830)
T ss_pred EECCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCHHHH-HCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf 4302346556614405773499940577751477763738788-378728997316876311189999986501662788
Q ss_pred EECCHHHHHH------HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCC-CCCCHHHHHHHHHHHHHCCC
Q ss_conf 8589789888------7307798699806420233442000113220440453100246-54311567777665430598
Q gi|255764515|r 80 ITGTVKQRTK------VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSF-RLRQGSKTARALAKPAWESE 152 (458)
Q Consensus 80 ~~g~~~~r~~------~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~-~~~~~s~~~~~l~~~~~~~~ 152 (458)
-.|...-+.. ....+.+|+|-|||.+..+.+.-....+...|||||.|.+... ++.+-......+..+...+
T Consensus 295 rVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~A- 373 (830)
T COG1202 295 RVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGA- 373 (830)
T ss_pred EECHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCCCHHHHHHHHHHHCCCC-
T ss_conf 8423452246775356899877679861110789987078555443599650120440101632352899999867777-
Q ss_pred EEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07996584023100101346775178887753277887773695640330000245555455899999742454332000
Q gi|255764515|r 153 RFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIA 232 (458)
Q Consensus 153 ~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (458)
..+.||||- .+|.|+...+.. ...
T Consensus 374 Q~i~LSATV--gNp~elA~~l~a------------------------------------------------------~lV 397 (830)
T COG1202 374 QFIYLSATV--GNPEELAKKLGA------------------------------------------------------KLV 397 (830)
T ss_pred EEEEEEEEC--CCHHHHHHHHCC------------------------------------------------------EEE
T ss_conf 499987433--886999988387------------------------------------------------------258
Q ss_pred CCCCCCCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 010010011000345245368-9988899999985103345202234788887542035410002234300013433332
Q gi|255764515|r 233 DYQNIDKPILITKKVPLPQPV-MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 311 (458)
Q Consensus 233 ~~~~l~~~~~~~~~v~l~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~ 311 (458)
.+..-|.|........-...+ .+...++.+.-+.
T Consensus 398 ~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~--------------------------------------------- 432 (830)
T COG1202 398 LYDERPVPLERHLVFARNESEKWDIIARLVKREFS--------------------------------------------- 432 (830)
T ss_pred EECCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHH---------------------------------------------
T ss_conf 65588787367066404816777899999999975---------------------------------------------
Q ss_pred HHHHHHCCCCCEEEEHHHHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCC
Q ss_conf 566541248840342223678886641----------0002653344589987642458855899844221116220017
Q gi|255764515|r 312 LEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYG 381 (458)
Q Consensus 312 l~~il~~~~~~kviif~~~~~~~~~i~----------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a 381 (458)
.+ -...-....|||++...--..+. .-++.|.+-.+|+.+-..|.+++..+++ ++.|.|.|+++. |
T Consensus 433 -~~-sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VV-TTAAL~AGVDFP-A 508 (830)
T COG1202 433 -TE-SSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVV-TTAALAAGVDFP-A 508 (830)
T ss_pred -HH-HCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEE-EHHHHHCCCCCC-H
T ss_conf -44-1137677369994216669999988610786665443798678888899997608755576-424564478875-1
Q ss_pred CCEEEEE----CC-CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 8599990----89-989868644566662022020378775289999858
Q gi|255764515|r 382 GNILVFF----SL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 382 ~~~iI~~----~~-~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
+-|||- .. |-||..++|.-||.-|..-|- .-.||.|+-+
T Consensus 509 -SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHd-----rGkVyllvep 552 (830)
T COG1202 509 -SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHD-----RGKVYLLVEP 552 (830)
T ss_pred -HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC-----CCEEEEEECC
T ss_conf -8999999871043278999999850469987233-----7339999557
No 64
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.79 E-value=6.5e-18 Score=126.75 Aligned_cols=160 Identities=22% Similarity=0.232 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 478999999999679809995889986899999-99999975-9994999916046569999999985588881599985
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVSVLT-ALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVIT 81 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~-~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~ 81 (458)
+|+|.+++..+.++++.++.+++|+|||+.++. ++..+... ...++++++|...+.+||.+++.++......++...+
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~~ 80 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALLY 80 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 94599999999769978998899975899999999999874778987999906088888999886432102676404641
Q ss_pred CCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 897--8988873077986998064202334420-0011322044045310024654311567777665430598079965
Q gi|255764515|r 82 GTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELT 158 (458)
Q Consensus 82 g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LT 158 (458)
|.. ..+...+....+++++|++.+....... ......+++|+||+|.+.... ........+..+ ......++||
T Consensus 81 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~--~g~~~~~il~~l-~~~~q~v~~S 157 (167)
T pfam00270 81 GGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQG--FGDDLEEILRRL-PPKRQILLLS 157 (167)
T ss_pred CCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCC--HHHHHHHHHHHC-CCCCCEEEEE
T ss_conf 7861788987640577079947899999998033121100389988088673358--299999999857-9999789997
Q ss_pred CCCHHHHCC
Q ss_conf 840231001
Q gi|255764515|r 159 GTPSPNGLI 167 (458)
Q Consensus 159 gTPi~n~~~ 167 (458)
||+- +++.
T Consensus 158 AT~~-~~~~ 165 (167)
T pfam00270 158 ATLP-RNVE 165 (167)
T ss_pred CCCC-HHHH
T ss_conf 2699-7785
No 65
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=2.4e-19 Score=135.43 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=94.0
Q ss_pred HCCCCCCCCHHHHHHCC--CCCEEEEHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf 01343333256654124--8840342223678886641000----------26533445899876424588558998442
Q gi|255764515|r 303 EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPA 370 (458)
Q Consensus 303 ~~~~~k~~~l~~il~~~--~~~kviif~~~~~~~~~i~~~~----------~~g~~~~~r~~~i~~f~~~~~~vli~s~~ 370 (458)
...++|++.+.+++++. +++++||||++...++.+...+ .++.+.++|..++++|++++..+++++ +
T Consensus 8 ~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t-~ 86 (131)
T cd00079 8 PVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVAT-D 86 (131)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEE-E
T ss_conf 386699999999999999789909999788999999999995589989999899999999999999775401048875-1
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEE
Q ss_conf 211162200178599990899898686445666620220203787752899
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 421 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~ 421 (458)
++++||||+. ++++|++|+|||+..+.|++||+ ||.||+..|.++
T Consensus 87 ~~~~Gldl~~-~~~vI~~~~~~s~~~~~Q~~GR~-----~R~gq~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPN-VSVVINYDLPWSPSSYLQRIGRA-----GRAGQKGTAILL 131 (131)
T ss_pred CCEECCCCCC-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCEEEEEC
T ss_conf 1200366102-87999978996989999897216-----708996379979
No 66
>KOG0350 consensus
Probab=99.78 E-value=1.2e-16 Score=119.15 Aligned_cols=352 Identities=17% Similarity=0.203 Sum_probs=187.0
Q ss_pred CCCHHHHHHHHHHHHC---------CCEEEEECCCCCHHHH-HHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 8747899999999967---------9809995889986899-9999999997599--94999916046569999999985
Q gi|255764515|r 2 NLAPHQTKIVDWILDH---------KRCAIWASMGSGKTVS-VLTALSYIHLWGE--KSVLVIAPLRVAQSVWTSEVQRW 69 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~---------~~~ll~~~~G~GKT~~-al~~~~~l~~~~~--~~~LIv~P~~l~~~~W~~Ei~kf 69 (458)
.++|-|...+.|++.- +-.++..++|+|||+. +|-+...|..... -+.+||+|...+..|-+++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 54505888888999861479998877547755789884566513789997038734057999954799999999999985
Q ss_pred CCCCCCEEEEEECCHHHHHHH--HC-CCC----CEEEECCCCHHHHHHHCCCCCCC-----CEEECCCCCCCCCCCCCCH
Q ss_conf 588881599985897898887--30-779----86998064202334420001132-----2044045310024654311
Q gi|255764515|r 70 SNFSHMNISVITGTVKQRTKV--LK-TPA----VLYVINFENLGWLVQELKGTWPF-----ATIVVDESTKLKSFRLRQG 137 (458)
Q Consensus 70 ~~~~~~~~~~~~g~~~~r~~~--~~-~~~----~i~i~s~e~~~~~~~~~~~~~~~-----~~iIiDEaH~lkn~~~~~~ 137 (458)
+...++.|....|..+...+. +. ... +|+|+|...+ .+++.....| ..+|||||-++-+
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL---VDHl~~~k~f~Lk~LrfLVIDEADRll~------ 309 (620)
T KOG0350 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL---VDHLNNTKSFDLKHLRFLVIDEADRLLD------ 309 (620)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHH---HHHCCCCCCCCHHHCEEEEECHHHHHHH------
T ss_conf 6688659886014540578999972599765436697372688---8860489875644535777525778999------
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHH-HHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 56777766543059807996584023-10010134677517888775327788777369564033000024555545589
Q gi|255764515|r 138 SKTARALAKPAWESERFIELTGTPSP-NGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQK 216 (458)
Q Consensus 138 s~~~~~l~~~~~~~~~~l~LTgTPi~-n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (458)
+.++.= .+.++.+.+||-. -.+.+++.+.. +. -+..+.+..... +................
T Consensus 310 -qsfQ~W------l~~v~~~~~~~k~~~~~~nii~~~~---~~--~pt~~~e~~t~~------~~~~~~l~kL~~satLs 371 (620)
T KOG0350 310 -QSFQEW------LDTVMSLCKTMKRVACLDNIIRQRQ---AP--QPTVLSELLTKL------GKLYPPLWKLVFSATLS 371 (620)
T ss_pred -HHHHHH------HHHHHHHHCCCHHHCCHHHHHHHCC---CC--CCHHHHHHHHHC------CCCCCHHHHHHCCHHHH
T ss_conf -999988------9999998377401047154441014---67--740058777412------77675267653013330
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99997424543320000100100110003452453689988899999985103345202234788887542035410002
Q gi|255764515|r 217 EIEAQLSDCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYD 296 (458)
Q Consensus 217 ~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~ 296 (458)
.....+.+..+. -|.. ..+..+ . ........ .+ .
T Consensus 372 qdP~Kl~~l~l~----------~Prl--~~v~~~--~----------------~~ryslp~---~l------~------- 405 (620)
T KOG0350 372 QDPSKLKDLTLH----------IPRL--FHVSKP--L----------------IGRYSLPS---SL------S------- 405 (620)
T ss_pred CCHHHHHHHHCC----------CCCE--EEEECC--C----------------CEEEECCH---HH------H-------
T ss_conf 496887653327----------9835--886225--4----------------32661575---54------2-------
Q ss_pred CCCCCHHCCC--CCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHC--------------CCCCCCHHHHHHHHHHHCCC
Q ss_conf 2343000134--3333256654124884034222367888664100--------------02653344589987642458
Q gi|255764515|r 297 EEKHWKEVHD--EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA--------------FPQGRTLDKDPCTIQEWNEG 360 (458)
Q Consensus 297 ~~~~~~~~~~--~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~~--------------~~~g~~~~~r~~~i~~f~~~ 360 (458)
......+ -|.-.+..+++..+..++|+|++-.+...++... |.++...+.|...+..|+.|
T Consensus 406 ---~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g 482 (620)
T KOG0350 406 ---HRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG 482 (620)
T ss_pred ---HCEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---13342023554376999997740104899952468899999999998626440255652344388999999987538
Q ss_pred CCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 85589984422111622001785999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 361 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 361 ~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
++++|||| ++.+-|+++-. .+.||.||+|-+...+.-|.||-. |.||.- ++|-++.. .|++.+..+.+|
T Consensus 483 ~i~vLIcS-D~laRGiDv~~-v~~VINYd~P~~~ktyVHR~GRTA-----RAgq~G--~a~tll~~--~~~r~F~klL~~ 551 (620)
T KOG0350 483 DINVLICS-DALARGIDVND-VDNVINYDPPASDKTYVHRAGRTA-----RAGQDG--YAITLLDK--HEKRLFSKLLKK 551 (620)
T ss_pred CCEEEEEH-HHHHCCCCCCC-CCEEEECCCCCHHHHHHHHHCCCC-----CCCCCC--EEEEEECC--CCCHHHHHHHHH
T ss_conf 95299852-36554776024-604763589812657877602210-----056774--47896315--540379999987
No 67
>KOG0333 consensus
Probab=99.75 E-value=3.5e-16 Score=116.26 Aligned_cols=332 Identities=17% Similarity=0.200 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHH----HHHHHHHH-------HHCCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 478999999999679809995889986899----99999999-------9759994999916046569999999985588
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVS----VLTALSYI-------HLWGEKSVLVIAPLRVAQSVWTSEVQRWSNF 72 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~----al~~~~~l-------~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~ 72 (458)
-|-|..++--+++++..+...++|+|||.- .+.++..+ +.-.....+|++|+..+.+|-++|-.||+..
T Consensus 269 tpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~ 348 (673)
T KOG0333 269 TPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKP 348 (673)
T ss_pred CHHHHHHCCCHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCC
T ss_conf 46788631101014772368731677532000158899870898414442346860012033799999999999875030
Q ss_pred CCCEEEEEEC-CHHH-HHHHHCCCCCEEEECCCCHH-HHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8815999858-9789-88873077986998064202-3344200011322044045310024654311567777665430
Q gi|255764515|r 73 SHMNISVITG-TVKQ-RTKVLKTPAVLYVINFENLG-WLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 73 ~~~~~~~~~g-~~~~-r~~~~~~~~~i~i~s~e~~~-~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.+.++..+.| -+.+ ....+.....++|.+.-.+- .+-+.++-.-.-..||+|||.++-..+-.. ...+.
T Consensus 349 lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~--dv~~i------ 420 (673)
T KOG0333 349 LGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEP--DVQKI------ 420 (673)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCH--HHHHH------
T ss_conf 1432899854633665302464154144247407888777788875058467624066654246667--78889------
Q ss_pred CCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59807996584023100101346775178887753277887773695640330000245555455899999742454332
Q gi|255764515|r 150 ESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSL 229 (458)
Q Consensus 150 ~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (458)
|+.-|..|- .|+-.-.. ....+.. .+..
T Consensus 421 -------L~~mPssn~-----------k~~tde~~-----------------------------~~~~~~~---~~~~-- 448 (673)
T KOG0333 421 -------LEQMPSSNA-----------KPDTDEKE-----------------------------GEERVRK---NFSS-- 448 (673)
T ss_pred -------HHHCCCCCC-----------CCCCCCHH-----------------------------HHHHHHH---HCCC--
T ss_conf -------983876345-----------88863102-----------------------------1888875---1031--
Q ss_pred HCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 00001001001100034524536899888999999851033452022347888875420354100022343000134333
Q gi|255764515|r 230 DIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 309 (458)
Q Consensus 230 ~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~ 309 (458)
. + .. . ........|++...+....+.+....-. .+... .-..++-| .-.....+.|.
T Consensus 449 ~-k-~y---r-qT~mftatm~p~verlar~ylr~pv~vt-ig~~g-----k~~~rveQ-----------~v~m~~ed~k~ 505 (673)
T KOG0333 449 S-K-KY---R-QTVMFTATMPPAVERLARSYLRRPVVVT-IGSAG-----KPTPRVEQ-----------KVEMVSEDEKR 505 (673)
T ss_pred C-C-CE---E-EEEEEECCCCHHHHHHHHHHHHCCEEEE-ECCCC-----CCCCCHHE-----------EEEEECCHHHH
T ss_conf 2-1-02---5-7899844787679999999852776999-54678-----98602111-----------78881556889
Q ss_pred CCHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCC
Q ss_conf 325665412488403422236788866410----------0026533445899876424588558998442211162200
Q gi|255764515|r 310 KALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 379 (458)
Q Consensus 310 ~~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~ 379 (458)
+.|.++++.....++|||.|.+...+.+.+ .+++|.+.++|..+++.|.++...||+++ +++|-||+.+
T Consensus 506 kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-DvAgRGIDIp 584 (673)
T KOG0333 506 KKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVAT-DVAGRGIDIP 584 (673)
T ss_pred HHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCC
T ss_conf 999999984799987999831324899999986443247996178527789999999871578779983-2212577777
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 178599990899898686445666620220203787752899998589
Q gi|255764515|r 380 YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 380 ~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
.- ++||+||+.=+..++.-+|||- .|-|+.-. - .-|+++.
T Consensus 585 nV-SlVinydmaksieDYtHRIGRT-----gRAGk~Gt-a-iSflt~~ 624 (673)
T KOG0333 585 NV-SLVINYDMAKSIEDYTHRIGRT-----GRAGKSGT-A-ISFLTPA 624 (673)
T ss_pred CC-CEEEECCHHHHHHHHHHHHCCC-----CCCCCCCE-E-EEEECCC
T ss_conf 61-2146220556589998874234-----44666753-6-8986401
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=1.3e-15 Score=112.89 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCC----CCCCEEE
Q ss_conf 89999999996798--099958899868999999999997599949999160-4656999999998558----8881599
Q gi|255764515|r 6 HQTKIVDWILDHKR--CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSN----FSHMNIS 78 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~--~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~----~~~~~~~ 78 (458)
||.++.+.+.+..+ .++..++|+|||+.++.-+ + .+..++|+|.|. ++..+| .+.++.|.. .....+.
T Consensus 1 hq~~~~~~~~~~~~~~ivitAPTgsGKT~Aa~lp~--l--~~~~~~lyi~P~kAL~~Dq-~~~l~~~~~~~~~~~~~~~~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPL--L--HGENDTIALYPTNALIEDQ-TEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH--H--HCCCCEEEECCHHHHHHHH-HHHHHHHHHHHCCCCCCCEE
T ss_conf 96899999976899869998999856999999999--7--3898799977789999999-99999999874423464402
Q ss_pred EEECCH----------------------HHHHHHHCCCCCEEEECCCCHHHHHHHCC---------CCCCCCEEECCCCC
Q ss_conf 985897----------------------89888730779869980642023344200---------01132204404531
Q gi|255764515|r 79 VITGTV----------------------KQRTKVLKTPAVLYVINFENLGWLVQELK---------GTWPFATIVVDEST 127 (458)
Q Consensus 79 ~~~g~~----------------------~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---------~~~~~~~iIiDEaH 127 (458)
.+.|.. ..|.........|+++|.|++........ .....+.|||||.|
T Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDEiH 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEH
T ss_conf 11464323344465555343445410256654302589909992889999997620136510399998516747756200
Q ss_pred CCCCCCCCCHHHHHHHHH--HHHHCCCEEEEECCCCHH
Q ss_conf 002465431156777766--543059807996584023
Q gi|255764515|r 128 KLKSFRLRQGSKTARALA--KPAWESERFIELTGTPSP 163 (458)
Q Consensus 128 ~lkn~~~~~~s~~~~~l~--~~~~~~~~~l~LTgTPi~ 163 (458)
.+..............+. ......++.++|||||-+
T Consensus 156 ~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 00676208999999999998633689808998279980
No 69
>KOG0338 consensus
Probab=99.72 E-value=1.9e-15 Score=111.82 Aligned_cols=279 Identities=18% Similarity=0.246 Sum_probs=161.9
Q ss_pred EEECCCCCHHHH-HHHHHHHHHHCCC----CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC--CHHHHHHHHCCC
Q ss_conf 995889986899-9999999997599----949999160465699999999855888815999858--978988873077
Q gi|255764515|r 22 IWASMGSGKTVS-VLTALSYIHLWGE----KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITG--TVKQRTKVLKTP 94 (458)
Q Consensus 22 l~~~~G~GKT~~-al~~~~~l~~~~~----~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g--~~~~r~~~~~~~ 94 (458)
-+..+|+|||.- ++-.++.|.+.+. -++||+||+.-+.-|-.+-+.+.+.+-.+.+....| +-+.-...+.+.
T Consensus 223 a~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~ 302 (691)
T KOG0338 223 ACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSR 302 (691)
T ss_pred HEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 40114687114567889999852735676126999835089999999999998766040244452474578899998308
Q ss_pred CCEEEECCCCHHHHHHHCCCCCCC-----CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCH
Q ss_conf 986998064202334420001132-----204404531002465431156777766543059807996584023100101
Q gi|255764515|r 95 AVLYVINFENLGWLVQELKGTWPF-----ATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDL 169 (458)
Q Consensus 95 ~~i~i~s~e~~~~~~~~~~~~~~~-----~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el 169 (458)
-+|+|.|...+ .+++.+...| ..+|+|||.++-.. .-.--.+-+..+..+.+.-++.|||. ...+.||
T Consensus 303 PDIVIATPGRl---IDHlrNs~sf~ldsiEVLvlDEADRMLee---gFademnEii~lcpk~RQTmLFSATM-teeVkdL 375 (691)
T KOG0338 303 PDIVIATPGRL---IDHLRNSPSFNLDSIEVLVLDEADRMLEE---GFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDL 375 (691)
T ss_pred CCEEEECCHHH---HHHHCCCCCCCCCCEEEEEECHHHHHHHH---HHHHHHHHHHHHCCCCCCCEEEHHHH-HHHHHHH
T ss_conf 98799465058---88751588765343257773338889999---99999999998551023001211225-7889999
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
Q ss_conf 34677517888775327788777369564033000024555545589999974245433200001001001100034524
Q gi|255764515|r 170 WGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKPILITKKVPL 249 (458)
Q Consensus 170 ~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l 249 (458)
.++ ++=.| .. +.+..
T Consensus 376 ~sl-SL~kP--------------------------------------------------------------vr--ifvd~ 390 (691)
T KOG0338 376 ASL-SLNKP--------------------------------------------------------------VR--IFVDP 390 (691)
T ss_pred HHH-HCCCC--------------------------------------------------------------EE--EEECC
T ss_conf 975-51798--------------------------------------------------------------58--98578
Q ss_pred CHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEHH
Q ss_conf 5368-998889999998510334520223478888754203541000223430001343333256654124884034222
Q gi|255764515|r 250 PQPV-MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAY 328 (458)
Q Consensus 250 ~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~~~~~~kviif~ 328 (458)
+... .+.-.++.+ -..+.... +--.+..++.+.-...++||.
T Consensus 391 ~~~~a~~LtQEFiR----IR~~re~d---------------------------------Rea~l~~l~~rtf~~~~ivFv 433 (691)
T KOG0338 391 NKDTAPKLTQEFIR----IRPKREGD---------------------------------REAMLASLITRTFQDRTIVFV 433 (691)
T ss_pred CCCCCHHHHHHHHE----ECCCCCCC---------------------------------CHHHHHHHHHHHCCCCEEEEE
T ss_conf 65444044477810----05564444---------------------------------178999999876043369997
Q ss_pred HHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 3678886641----------000265334458998764245885589984422111622001785999908998986864
Q gi|255764515|r 329 HFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQ 398 (458)
Q Consensus 329 ~~~~~~~~i~----------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~ 398 (458)
..+....++. ..+++.-+..+|-+.++.|.+.+++|||++ +.++-||++. +.-+||+|++|-+...+.
T Consensus 434 ~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT-DvAsRGLDI~-gV~tVINy~mP~t~e~Y~ 511 (691)
T KOG0338 434 RTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT-DVASRGLDIE-GVQTVINYAMPKTIEHYL 511 (691)
T ss_pred EHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEE-CHHHCCCCCC-CEEEEEECCCCHHHHHHH
T ss_conf 20877889999998730106655054108889999998774568779872-0444467765-516888426752689999
Q ss_pred HHHHHHHCCCCHHCC
Q ss_conf 456666202202037
Q gi|255764515|r 399 QMIERIGVTRQRQAG 413 (458)
Q Consensus 399 Q~~gRi~~~r~hR~G 413 (458)
-++||-. ||.|-|
T Consensus 512 HRVGRTA--RAGRaG 524 (691)
T KOG0338 512 HRVGRTA--RAGRAG 524 (691)
T ss_pred HHHHHHH--HCCCCC
T ss_conf 8740033--245676
No 70
>KOG0328 consensus
Probab=99.70 E-value=1.9e-15 Score=111.81 Aligned_cols=314 Identities=13% Similarity=0.182 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 8999999999679809995889986899-99999999975-999499991604656999999998558888159998589
Q gi|255764515|r 6 HQTKIVDWILDHKRCAIWASMGSGKTVS-VLTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGT 83 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~~ll~~~~G~GKT~~-al~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~ 83 (458)
-|..|+-.++..+..+.-..-|+|||.+ ++..+..+... .+-.+||+.|+.-+..|-++-+.-....-..+++...|.
T Consensus 53 IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg 132 (400)
T KOG0328 53 IQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGG 132 (400)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 77610245633661478704788844789866314034342003578954708999999999998324236448987357
Q ss_pred H--HHHHHHHCCCCCEEEECCCCHHHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 7--8988873077986998064202334-420001132204404531002465431156777766543059807996584
Q gi|255764515|r 84 V--KQRTKVLKTPAVLYVINFENLGWLV-QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 84 ~--~~r~~~~~~~~~i~i~s~e~~~~~~-~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
. .+..+.+...-+++.-+...+-... ...+......++|+|||..+-|.. -..+.+...+.+ +....+++.|||
T Consensus 133 ~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg--fk~Qiydiyr~l-p~~~Qvv~~SAT 209 (400)
T KOG0328 133 KNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG--FKEQIYDIYRYL-PPGAQVVLVSAT 209 (400)
T ss_pred CCCCHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHH--HHHHHHHHHHHC-CCCCEEEEEECC
T ss_conf 75103456532561475079815999998623101142689854589998756--778899999847-998669999645
Q ss_pred CHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 02310010134677517888775327788777369564033000024555545589999974245433200001001001
Q gi|255764515|r 161 PSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240 (458)
Q Consensus 161 Pi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 240 (458)
- |.|+. .+ .+.| + +.|
T Consensus 210 l----p~eil---em--------------t~kf--------------------------------m-----------tdp 225 (400)
T KOG0328 210 L----PHEIL---EM--------------TEKF--------------------------------M-----------TDP 225 (400)
T ss_pred C----CHHHH---HH--------------HHHH--------------------------------C-----------CCC
T ss_conf 8----69999---99--------------9874--------------------------------4-----------885
Q ss_pred C-EEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCC
Q ss_conf 1-000345245368998889999998510334520223478888754203541000223430001343333256654124
Q gi|255764515|r 241 I-LITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKA 319 (458)
Q Consensus 241 ~-~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~~~ 319 (458)
. .....-+++.+-.+.| +....+ + .=|++.|.++.+..
T Consensus 226 vrilvkrdeltlEgIKqf-------~v~ve~----------------------------E------ewKfdtLcdLYd~L 264 (400)
T KOG0328 226 VRILVKRDELTLEGIKQF-------FVAVEK----------------------------E------EWKFDTLCDLYDTL 264 (400)
T ss_pred EEEEEECCCCCHHHHHHH-------EEEECH----------------------------H------HHHHHHHHHHHHHH
T ss_conf 268870577766665554-------244132----------------------------2------55376898886430
Q ss_pred CCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEEC
Q ss_conf 88403422236788866410----------00265334458998764245885589984422111622001785999908
Q gi|255764515|r 320 NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 389 (458)
Q Consensus 320 ~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~ 389 (458)
.=...+|||+.+..++-+.+ ..+++...++|.+++++|+.|+.+||+.+ ++-+-|++.|+- +.+|+||
T Consensus 265 tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitT-DVwaRGiDv~qV-slviNYD 342 (400)
T KOG0328 265 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITT-DVWARGIDVQQV-SLVINYD 342 (400)
T ss_pred EHHEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE-CHHHCCCCCCEE-EEEEECC
T ss_conf 61147999626404368899988617336630577645679999987654783499971-044425875005-7899437
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 9989868644566662022020378775289999858996899999999
Q gi|255764515|r 390 LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 438 (458)
Q Consensus 390 ~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~ 438 (458)
+|-|...+.-++||- .|.|.+ -.++.|+..+ |-+++.-++
T Consensus 343 LP~nre~YIHRIGRS-----GRFGRk--GvainFVk~~--d~~~lrdie 382 (400)
T KOG0328 343 LPNNRELYIHRIGRS-----GRFGRK--GVAINFVKSD--DLRILRDIE 382 (400)
T ss_pred CCCCHHHHHHHHCCC-----CCCCCC--CEEEEEECHH--HHHHHHHHH
T ss_conf 885487876650135-----656776--0699875178--899999999
No 71
>KOG0343 consensus
Probab=99.70 E-value=1e-14 Score=107.36 Aligned_cols=320 Identities=16% Similarity=0.132 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCC-----CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 789999999996798099958899868999-99999999759-----994999916046569999999985588881599
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWG-----EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~-----~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~ 78 (458)
.-|...+-..+...-.+-|.-+|+|||+.- +-.++.|...+ .-.+|||.|+.-+.-|-.+.+.+-.........
T Consensus 94 eiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaG 173 (758)
T KOG0343 94 EIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAG 173 (758)
T ss_pred HHHHHHCCHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99876414220575000102358884465439999999971778878832699565299999999999987520564311
Q ss_pred EEEC-CHHHHHHHHCCCCCEEEECCCCHHHHHHH--CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 9858-97898887307798699806420233442--00011322044045310024654311567777665430598079
Q gi|255764515|r 79 VITG-TVKQRTKVLKTPAVLYVINFENLGWLVQE--LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 79 ~~~g-~~~~r~~~~~~~~~i~i~s~e~~~~~~~~--~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
.+-| ..-..+..--..-.|+||+...+-...++ .+..-.-.++|+|||.++-.. .-.+...++....+..+..+
T Consensus 174 LiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM---GFk~tL~~Ii~~lP~~RQTL 250 (758)
T KOG0343 174 LIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM---GFKKTLNAIIENLPKKRQTL 250 (758)
T ss_pred EEECCCHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH---HHHHHHHHHHHHCCHHHEEE
T ss_conf 366571268899766257769966178998754167878776047873208889877---67888999987377233046
Q ss_pred EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
+.||||. ++..||. -+++-||.. + .+..
T Consensus 251 LFSATqt-~svkdLa-RLsL~dP~~---------v-------------------------------------svhe---- 278 (758)
T KOG0343 251 LFSATQT-KSVKDLA-RLSLKDPVY---------V-------------------------------------SVHE---- 278 (758)
T ss_pred EEECCCC-HHHHHHH-HHHCCCCCE---------E-------------------------------------EEEC----
T ss_conf 6632551-1399999-753479857---------9-------------------------------------9723----
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHH
Q ss_conf 01001100034524536899888999999851033452022347888875420354100022343000134333325665
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVI 315 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~i 315 (458)
..+.-+|+....+ -.......|+++|-..
T Consensus 279 ---------~a~~atP~~L~Q~------------------------------------------y~~v~l~~Ki~~L~sF 307 (758)
T KOG0343 279 ---------NAVAATPSNLQQS------------------------------------------YVIVPLEDKIDMLWSF 307 (758)
T ss_pred ---------CCCCCCHHHHHHE------------------------------------------EEEEEHHHHHHHHHHH
T ss_conf ---------5333683645332------------------------------------------7997601478999999
Q ss_pred HHCCCCCEEEEHHHHHHHHHHHHH------------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCC
Q ss_conf 412488403422236788866410------------00265334458998764245885589984422111622001785
Q gi|255764515|r 316 IEKANAAPIIVAYHFNSDLARLQK------------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 383 (458)
Q Consensus 316 l~~~~~~kviif~~~~~~~~~i~~------------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~ 383 (458)
+..+...+.|||...-..+.-+++ .++++++..+|.++.++|.....-||+|+ +.++-||++. |.+
T Consensus 308 I~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T-Dv~aRGLDFp-aVd 385 (758)
T KOG0343 308 IKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT-DVAARGLDFP-AVD 385 (758)
T ss_pred HHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEE-HHHHCCCCCC-CCC
T ss_conf 98452543699986006899999999850899832542163137788999999987555589860-2554368986-433
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 384 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 384 ~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
+||-+|+|-+..++.-+.||.. |++..-.. +.++++ +=+|.+.+.+.+|
T Consensus 386 wViQ~DCPedv~tYIHRvGRtA-----R~~~~G~s--ll~L~p-sEeE~~l~~Lq~k 434 (758)
T KOG0343 386 WVIQVDCPEDVDTYIHRVGRTA-----RYKERGES--LLMLTP-SEEEAMLKKLQKK 434 (758)
T ss_pred EEEEECCCHHHHHHHHHHHHHH-----CCCCCCCE--EEEECC-HHHHHHHHHHHHC
T ss_conf 6998068205889998721221-----13677856--899763-1699999999875
No 72
>KOG0340 consensus
Probab=99.67 E-value=8.1e-14 Score=101.94 Aligned_cols=304 Identities=15% Similarity=0.191 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 478999999999679809995889986899-9999999997599-94999916046569999999985588881599985
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVS-VLTALSYIHLWGE-KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVIT 81 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~-al~~~~~l~~~~~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~ 81 (458)
-|-|...+-++++.+.|+=+.-+|+|||.. |+-.+..+...+. --.||++|+.-+.-|-.+.|.--...-.+++.++.
T Consensus 31 TpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~viv 110 (442)
T KOG0340 31 TPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIV 110 (442)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 82676524878546631031346887411222787776133887606999545288888888999984564563279997
Q ss_pred CCHH-HHHH-HHCCCCCEEEECCCCHHHHHHHCCCCCC-----CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 8978-9888-7307798699806420233442000113-----2204404531002465431156777766543059807
Q gi|255764515|r 82 GTVK-QRTK-VLKTPAVLYVINFENLGWLVQELKGTWP-----FATIVVDESTKLKSFRLRQGSKTARALAKPAWESERF 154 (458)
Q Consensus 82 g~~~-~r~~-~~~~~~~i~i~s~e~~~~~~~~~~~~~~-----~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~ 154 (458)
|... -... .+...-+++++|.+.+......-..... -..+++|||.++-+.. ...-...+....+..+-.
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~---f~d~L~~i~e~lP~~RQt 187 (442)
T KOG0340 111 GGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC---FPDILEGIEECLPKPRQT 187 (442)
T ss_pred CCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHCEEEEEECCHHHHHCCC---HHHHHHHHHCCCCCCCCE
T ss_conf 56887645444266987575176333541126876552555300467741302654156---056776665048876433
Q ss_pred EEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99658402310010134677517888775327788777369564033000024555545589999974245433200001
Q gi|255764515|r 155 IELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADY 234 (458)
Q Consensus 155 l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 234 (458)
+++||| +.+...+++.. | ...+ ..|+ + +-.
T Consensus 188 LlfSAT-itd~i~ql~~~-----~---i~k~-~a~~------------~----------------------------e~~ 217 (442)
T KOG0340 188 LLFSAT-ITDTIKQLFGC-----P---ITKS-IAFE------------L----------------------------EVI 217 (442)
T ss_pred EEEEEE-HHHHHHHHHCC-----C---CCCC-CCEE------------E----------------------------ECC
T ss_conf 799866-36579986368-----7---4555-0268------------8----------------------------526
Q ss_pred CCCCCCCE-EEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHH
Q ss_conf 00100110-00345245368998889999998510334520223478888754203541000223430001343333256
Q gi|255764515|r 235 QNIDKPIL-ITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313 (458)
Q Consensus 235 ~~l~~~~~-~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~ 313 (458)
.+.+.+.. .....-.+.....+|- +..|.
T Consensus 218 ~~vstvetL~q~yI~~~~~vkdaYL--------------------------------------------------v~~Lr 247 (442)
T KOG0340 218 DGVSTVETLYQGYILVSIDVKDAYL--------------------------------------------------VHLLR 247 (442)
T ss_pred CCCCCHHHHHHHEEECCHHHHHHHH--------------------------------------------------HHHHH
T ss_conf 9987254552022205444567889--------------------------------------------------98775
Q ss_pred HHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCC
Q ss_conf 65412488403422236788866410----------00265334458998764245885589984422111622001785
Q gi|255764515|r 314 VIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 383 (458)
Q Consensus 314 ~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~ 383 (458)
+.-++ +...++||.+-..+-..+.. .++.-++..+|-.++.+|+++..++||++ ++++-||+... ..
T Consensus 248 ~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT-DVAsRGLDIP~-V~ 324 (442)
T KOG0340 248 DFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT-DVASRGLDIPT-VE 324 (442)
T ss_pred HHHHC-CCCEEEEEEEHHHHHHHHHHHHHHHCEEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEE-CHHHCCCCCCC-EE
T ss_conf 22213-57608999604689999999996303445431100508889989987762674089973-13432789884-46
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHCCCC
Q ss_conf 99990899898686445666620220203787
Q gi|255764515|r 384 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 415 (458)
Q Consensus 384 ~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~ 415 (458)
.||++|+|-.|..+.-+.||-. ||.|.|..
T Consensus 325 LVvN~diPr~P~~yiHRvGRtA--RAGR~G~a 354 (442)
T KOG0340 325 LVVNHDIPRDPKDYIHRVGRTA--RAGRKGMA 354 (442)
T ss_pred EEEECCCCCCHHHHHHHHCCHH--CCCCCCCE
T ss_conf 7870688998788887603012--05677642
No 73
>KOG0347 consensus
Probab=99.65 E-value=9.8e-14 Score=101.46 Aligned_cols=337 Identities=15% Similarity=0.160 Sum_probs=187.6
Q ss_pred CEEEEECCCCCHHHHH-HHHHHHHHH-------------CCCC-CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 8099958899868999-999999997-------------5999-499991604656999999998558888159998589
Q gi|255764515|r 19 RCAIWASMGSGKTVSV-LTALSYIHL-------------WGEK-SVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGT 83 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~a-l~~~~~l~~-------------~~~~-~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~ 83 (458)
-.+=++++|+|||+.- |-+++.+.. .+.+ -.|||+|+.-+..|-...|..-...+.+.+..++|.
T Consensus 221 DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GG 300 (731)
T KOG0347 221 DILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGG 300 (731)
T ss_pred HCCCCCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECH
T ss_conf 00033346887424412325454330365376544677605764038963709999999999998613467278875230
Q ss_pred --HHHHHHHHCCCCCEEEECCCCHHHHHHH----CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----E
Q ss_conf --7898887307798699806420233442----00011322044045310024654311567777665430598----0
Q gi|255764515|r 84 --VKQRTKVLKTPAVLYVINFENLGWLVQE----LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESE----R 153 (458)
Q Consensus 84 --~~~r~~~~~~~~~i~i~s~e~~~~~~~~----~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~----~ 153 (458)
...-..+++...+|+|.|...+=-+.++ +....+..++|+||+-++-- ...-.-..+.+..+....+ .
T Consensus 301 LavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmve--kghF~Els~lL~~L~e~~~~~qrQ 378 (731)
T KOG0347 301 LAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVE--KGHFEELSKLLKHLNEEQKNRQRQ 378 (731)
T ss_pred HHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCEEEEECCHHHHHH--HCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 579999999852998799366289999975106664233240788734777755--110999999999860311051012
Q ss_pred EEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 79965840231001013467751788877532778877736956403300002455554558999997424543320000
Q gi|255764515|r 154 FIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIAD 233 (458)
Q Consensus 154 ~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 233 (458)
-+..|||-. +.... | +.. .+ ...... ......+...+....++-. +.
T Consensus 379 TlVFSATlt---------~~~~~-~---~~~------~~----k~~~k~---------~~~~~kiq~Lmk~ig~~~k-pk 425 (731)
T KOG0347 379 TLVFSATLT---------LVLQQ-P---LSS------SR----KKKDKE---------DELNAKIQHLMKKIGFRGK-PK 425 (731)
T ss_pred EEEEEEEEE---------HHHCC-H---HHH------HH----HCCCHH---------HHHHHHHHHHHHHHCCCCC-CE
T ss_conf 589987763---------33217-0---577------65----422114---------5566799999998475689-82
Q ss_pred CCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHH
Q ss_conf 10010011000345245368998889999998510334520223478888754203541000223430001343333256
Q gi|255764515|r 234 YQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313 (458)
Q Consensus 234 ~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~ 313 (458)
.+++++...-+-. + .+. .+.|.+. +|--.+.
T Consensus 426 ------------iiD~t~q~~ta~~-l-~Es----------------------~I~C~~~-------------eKD~yly 456 (731)
T KOG0347 426 ------------IIDLTPQSATAST-L-TES----------------------LIECPPL-------------EKDLYLY 456 (731)
T ss_pred ------------EEECCCCHHHHHH-H-HHH----------------------HHCCCCC-------------CCCEEEE
T ss_conf ------------6766820447888-8-877----------------------6358854-------------4540689
Q ss_pred HHHHCCCCCEEEEHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCC
Q ss_conf 6541248840342223678886641000----------265334458998764245885589984422111622001785
Q gi|255764515|r 314 VIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 383 (458)
Q Consensus 314 ~il~~~~~~kviif~~~~~~~~~i~~~~----------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~ 383 (458)
-++....|+ -+||||-...+.+|...+ +..+...+|-..+++|.+....|||++ ++++-||+++ +..
T Consensus 457 Yfl~ryPGr-TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaT-DVAARGLDIp-~V~ 533 (731)
T KOG0347 457 YFLTRYPGR-TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIAT-DVAARGLDIP-GVQ 533 (731)
T ss_pred EEEEECCCC-EEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-HHHHCCCCCC-CCC
T ss_conf 988636983-5998411889999999974169997102577889999876998744888179962-3444258887-863
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC---------------------CHHHHHHHHHHHHHH
Q ss_conf 99990899898686445666620220203787752899998589---------------------968999999999999
Q gi|255764515|r 384 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---------------------TIDELVLQRLRTKST 442 (458)
Q Consensus 384 ~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~---------------------tide~i~~~~~~K~~ 442 (458)
+||||..|-+...+.-+-||-.| |. ...|.+ .|+.++ .+++.++..+.+...
T Consensus 534 HVIHYqVPrtseiYVHRSGRTAR--A~----~~Gvsv-ml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvr 606 (731)
T KOG0347 534 HVIHYQVPRTSEIYVHRSGRTAR--AN----SEGVSV-MLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVR 606 (731)
T ss_pred EEEEEECCCCCCEEEECCCCCCC--CC----CCCEEE-EEECHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHH
T ss_conf 67896068753246762665322--56----788379-986817757899999987323677730021789999999999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q gi|255764515|r 443 IQDLLLN 449 (458)
Q Consensus 443 ~~~~~~~ 449 (458)
++..+-+
T Consensus 607 LA~ei~~ 613 (731)
T KOG0347 607 LAREIDK 613 (731)
T ss_pred HHHHHHH
T ss_conf 9998887
No 74
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.6e-14 Score=103.41 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH-HHHCCCCCCEEEEE
Q ss_conf 87478999999999679809995889986899999999999759994999916046569999999-98558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEV-QRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei-~kf~~~~~~~~~~~ 80 (458)
+|.|+|.+|+..+....+.+++..+|+|||+.+-.++......|. ++...+|--.+.||=..|+ .+|... .-.+.++
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~ 196 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLM 196 (1041)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC-CEEECCCHHHHHHHHHHHHHHHHHHH-HHHCCCE
T ss_conf 967899999999847995799733789855599999999987189-44861630664206799999986005-6540401
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 58978988873077986998064202334420-00113220440453100246543115677776654305980799658
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTG 159 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTg 159 (458)
+|+. ..+.+..+.|++-|-+++....- ....+-..||+||.|.+.....+ . .-..+..+.++.-+.++|||
T Consensus 197 TGDv-----~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG--~-VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 197 TGDV-----SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERG--V-VWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred ECCE-----EECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCC--H-HHHHHHHHCCCCCCEEEEEC
T ss_conf 0543-----42799966886099999986258610135306888766650463221--2-57899986677776899967
Q ss_pred CCHHH
Q ss_conf 40231
Q gi|255764515|r 160 TPSPN 164 (458)
Q Consensus 160 TPi~n 164 (458)
| ++|
T Consensus 269 T-v~N 272 (1041)
T COG4581 269 T-VPN 272 (1041)
T ss_pred C-CCC
T ss_conf 8-898
No 75
>KOG0335 consensus
Probab=99.64 E-value=6.5e-14 Score=102.53 Aligned_cols=309 Identities=19% Similarity=0.205 Sum_probs=171.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCC-----------CCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 874789999999996798099958899868999-99999999759-----------994999916046569999999985
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWG-----------EKSVLVIAPLRVAQSVWTSEVQRW 69 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~-----------~~~~LIv~P~~l~~~~W~~Ei~kf 69 (458)
+.-|.|+-++.-+.+.+....++++|+|||.-= +-++.++...+ ....||++|++-+.+|-..|..||
T Consensus 96 ~ptpvQk~sip~i~~GrdlmacAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~ 175 (482)
T KOG0335 96 KPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF 175 (482)
T ss_pred CCCCCEECCCCEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 89861560422442588427882578851378888899999864865666567788972599817378766788888764
Q ss_pred CCCCCCEEEEEECCHHHHHHH--HCCCCCEEEECCCCHHHHHHHCCCC-CCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 588881599985897898887--3077986998064202334420001-1322044045310024654311567777665
Q gi|255764515|r 70 SNFSHMNISVITGTVKQRTKV--LKTPAVLYVINFENLGWLVQELKGT-WPFATIVVDESTKLKSFRLRQGSKTARALAK 146 (458)
Q Consensus 70 ~~~~~~~~~~~~g~~~~r~~~--~~~~~~i~i~s~e~~~~~~~~~~~~-~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~ 146 (458)
.....++..+..|..+.+... .....+++++|...+..+.+.-.-. ..-.++|+|||-++-..-+-
T Consensus 176 ~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF----------- 244 (482)
T KOG0335 176 SYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGF----------- 244 (482)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCHHHHHHHCCEEEHHHCCEEEECCHHHHHHHCCC-----------
T ss_conf 022122033005784454422333257557885575056455415112623858995236776663266-----------
Q ss_pred HHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43059807996584023100101346775178887753277887773695640330000245555455899999742454
Q gi|255764515|r 147 PAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCC 226 (458)
Q Consensus 147 ~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (458)
..+...++.-+++|..|.-.-+ .|.. +|-.. . .......+.+..
T Consensus 245 -~p~Ir~Iv~~~~~~~~~~~qt~-----------mFSA---tfp~~----i-----------------q~l~~~fl~~~y 288 (482)
T KOG0335 245 -EPQIRKIVEQLGMPPKNNRQTL-----------LFSA---TFPKE----I-----------------QRLAADFLKDNY 288 (482)
T ss_pred -CHHHHHHHCCCCCCCCCCEEEE-----------EEEC---CCCHH----H-----------------HHHHHHHHHHCC
T ss_conf -6207999625588874661378-----------8735---57756----6-----------------644788764151
Q ss_pred HHHHCCCCCCCCCCCE-EEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
Q ss_conf 3320000100100110-003452453689988899999985103345202234788887542035410002234300013
Q gi|255764515|r 227 LSLDIADYQNIDKPIL-ITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH 305 (458)
Q Consensus 227 ~~~~~~~~~~l~~~~~-~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~ 305 (458)
+.........-..... ...+|.-.
T Consensus 289 i~laV~rvg~~~~ni~q~i~~V~~~------------------------------------------------------- 313 (482)
T KOG0335 289 IFLAVGRVGSTSENITQKILFVNEM------------------------------------------------------- 313 (482)
T ss_pred EEEEEEEECCCCCCCEEEEEEECCH-------------------------------------------------------
T ss_conf 3888753046665634676642111-------------------------------------------------------
Q ss_pred CCCCCCHHHHHH---------CCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 433332566541---------2488403422236788866410----------002653344589987642458855899
Q gi|255764515|r 306 DEKIKALEVIIE---------KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLF 366 (458)
Q Consensus 306 ~~k~~~l~~il~---------~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli 366 (458)
.|...|.+++. +...++++||+.-+...+.+.. .+++..+..+|...++.|.+|+.+++|
T Consensus 314 -~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335 314 -EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred -HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf -3578999886134678665776431389996130032699999861798745603325563799998776469866798
Q ss_pred EEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEE
Q ss_conf 844221116220017859999089989868644566662022020378775289
Q gi|255764515|r 367 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 420 (458)
Q Consensus 367 ~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v 420 (458)
++ ..++-|||... ..+||.||+|-+-.++.-++||- -|-|+.-..+.
T Consensus 393 aT-~VaaRGlDi~~-V~hVInyDmP~d~d~YvHRIGRT-----GR~Gn~G~ats 439 (482)
T KOG0335 393 AT-NVAARGLDIPN-VKHVINYDMPADIDDYVHRIGRT-----GRVGNGGRATS 439 (482)
T ss_pred EE-HHHHCCCCCCC-CCEEEEEECCCCHHHHHHHCCCC-----CCCCCCCEEEE
T ss_conf 70-36654788768-74358863675246677741543-----55777732688
No 76
>KOG0342 consensus
Probab=99.63 E-value=1.7e-13 Score=99.93 Aligned_cols=310 Identities=17% Similarity=0.204 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHCC-----CCCEEEEECCHHHHHHHHHHHHHHCCC-CCC
Q ss_conf 747899999999967980999588998689999-9999999759-----994999916046569999999985588-881
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVL-TALSYIHLWG-----EKSVLVIAPLRVAQSVWTSEVQRWSNF-SHM 75 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al-~~~~~l~~~~-----~~~~LIv~P~~l~~~~W~~Ei~kf~~~-~~~ 75 (458)
|-|-|...+.-++..+..+.+.-+|+|||+-=+ -+++.+.... .-.++||||+.-+..|-..|.+.-... +..
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~ 184 (543)
T KOG0342 105 MTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESI 184 (543)
T ss_pred CHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02888742676679843124512688741010468999998536577787148996562899998999999999727677
Q ss_pred EEEEEECCHHHHH--HHHCCCCCEEEECCCCHHHHHHHCCC--CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 5999858978988--87307798699806420233442000--1132204404531002465431156777766543059
Q gi|255764515|r 76 NISVITGTVKQRT--KVLKTPAVLYVINFENLGWLVQELKG--TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES 151 (458)
Q Consensus 76 ~~~~~~g~~~~r~--~~~~~~~~i~i~s~e~~~~~~~~~~~--~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~ 151 (458)
.+.++-|....+. +.+.....++|.|...+....+.... ...-+++|+|||-++-..+-. .-.+.+.++-.+-
T Consensus 185 ~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~---~di~~Ii~~lpk~ 261 (543)
T KOG0342 185 TVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFE---EDVEQIIKILPKQ 261 (543)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCHHHCCCEEEEECCHHHHHCCCH---HHHHHHHHHCCCC
T ss_conf 3478767741058999751555278867841776765578412212203575020356652518---8899998752355
Q ss_pred CEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 80799658402310010134677517888775327788777369564033000024555545589999974245433200
Q gi|255764515|r 152 ERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDI 231 (458)
Q Consensus 152 ~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (458)
...++.|||- +....++. . -.+..-.. .
T Consensus 262 rqt~LFSAT~-~~kV~~l~---~---------------------------------------------~~L~~d~~---~ 289 (543)
T KOG0342 262 RQTLLFSATQ-PSKVKDLA---R---------------------------------------------GALKRDPV---F 289 (543)
T ss_pred CCEEEEECCC-CHHHHHHH---H---------------------------------------------HHHCCCCE---E
T ss_conf 3046764789-68899999---8---------------------------------------------76337746---8
Q ss_pred CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 00100100110003452453689988899999985103345202234788887542035410002234300013433332
Q gi|255764515|r 232 ADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKA 311 (458)
Q Consensus 232 ~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~ 311 (458)
.++.+--. .+.. .++.| +......+.++-.
T Consensus 290 v~~~d~~~-----------~~Th----------------------------e~l~Q-----------gyvv~~~~~~f~l 319 (543)
T KOG0342 290 VNVDDGGE-----------RETH----------------------------ERLEQ-----------GYVVAPSDSRFSL 319 (543)
T ss_pred EECCCCCC-----------CCHH----------------------------HCCCC-----------EEEECCCCCHHHH
T ss_conf 62478997-----------3023----------------------------24664-----------0796265411799
Q ss_pred HHHHHHCCCC-CEEEEHHHHHHHHH---HH-------HHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 5665412488-40342223678886---64-------1000265334458998764245885589984422111622001
Q gi|255764515|r 312 LEVIIEKANA-APIIVAYHFNSDLA---RL-------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 312 l~~il~~~~~-~kviif~~~~~~~~---~i-------~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
+..++.+..+ .|++||+..-.... .+ .-.++++.+..+|.....+|.+.+.-||+|| ++++-|+|+.
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cT-DVaARGlD~P- 397 (543)
T KOG0342 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCT-DVAARGLDIP- 397 (543)
T ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEC-CHHHCCCCCC-
T ss_conf 99999973477249999330267999999985068753244257853220238998861066439960-3221368888-
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 7859999089989868644566662022020378775289999858
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
..+.||-|++|-+|..+.-|+||-. |.|-+ -..+.++++
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTa-----R~gk~--G~alL~l~p 436 (543)
T KOG0342 398 DVDWVVQYDPPSDPEQYIHRVGRTA-----REGKE--GKALLLLAP 436 (543)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCC-----CCCCC--CEEEEEECH
T ss_conf 8407998589999899898732122-----36898--638999676
No 77
>KOG0351 consensus
Probab=99.61 E-value=5e-14 Score=103.23 Aligned_cols=298 Identities=17% Similarity=0.221 Sum_probs=170.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160-4656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.++|-|.++|..++..+.+.+.+++|.||.+.= -+-.+... +-+|||.|. ||+.+| +.+. ....+....+
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCY--QlPA~l~~--gitvVISPL~SLm~DQ----v~~L-~~~~I~a~~L 334 (941)
T KOG0351 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCY--QLPALLLG--GVTVVISPLISLMQDQ----VTHL-SKKGIPACFL 334 (941)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEECCCCEEEEE--ECCCCCCC--CCEEEECCHHHHHHHH----HHHH-HHCCCCEEEC
T ss_conf 588439999999974884699953488625676--66610138--9369963389999999----9743-2148541323
Q ss_pred ECC--HHHHHHHHC----C--CCCEEEECCCCHHHH---H---HHCCCCCCCCEEECCCCCCCCCCCCC-CHHHHHHHHH
Q ss_conf 589--789888730----7--798699806420233---4---42000113220440453100246543-1156777766
Q gi|255764515|r 81 TGT--VKQRTKVLK----T--PAVLYVINFENLGWL---V---QELKGTWPFATIVVDESTKLKSFRLR-QGSKTARALA 145 (458)
Q Consensus 81 ~g~--~~~r~~~~~----~--~~~i~i~s~e~~~~~---~---~~~~~~~~~~~iIiDEaH~lkn~~~~-~~s~~~~~l~ 145 (458)
.+. ...+...+. . ...++-+|.|++... . ..+.....-.++|+||||-+..++-. +. .++.+.
T Consensus 335 ~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp--~Yk~l~ 412 (941)
T KOG0351 335 SSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRP--SYKRLG 412 (941)
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHCCCCHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCH--HHHHHH
T ss_conf 565668889999999857887678999677886333215667875067870488872278876642233347--789999
Q ss_pred HHHHCCC--EEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5430598--07996584023100101346775178887753277887773695640330000245555455899999742
Q gi|255764515|r 146 KPAWESE--RFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLS 223 (458)
Q Consensus 146 ~~~~~~~--~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (458)
.+..+.+ -.++||||-...=-.|+-..|++-+|. .+..+
T Consensus 413 ~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~s-------------------------------------- 453 (941)
T KOG0351 413 LLRIRFPGVPFIALTATATERVREDVIRSLGLRNPE-LFKSS-------------------------------------- 453 (941)
T ss_pred HHHHHCCCCCEEEEEHHCCHHHHHHHHHHHCCCCCC-EECCC--------------------------------------
T ss_conf 998527899768753002088999999982788863-22256--------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 45433200001001001100034524536899888999999851033452022347888875420354100022343000
Q gi|255764515|r 224 DCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKE 303 (458)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~ 303 (458)
.+ ++. +...|..... .
T Consensus 454 -----------fn--R~N-L~yeV~~k~~--------------------~------------------------------ 469 (941)
T KOG0351 454 -----------FN--RPN-LKYEVSPKTD--------------------K------------------------------ 469 (941)
T ss_pred -----------CC--CCC-CEEEEEECCC--------------------C------------------------------
T ss_conf -----------79--988-5599985667--------------------5------------------------------
Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCC
Q ss_conf 13433332566541248840342223678886641----------00026533445899876424588558998442211
Q gi|255764515|r 304 VHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQ----------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373 (458)
Q Consensus 304 ~~~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~----------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~ 373 (458)
+.-+..+..+-....+...||||....+-+.+. ..++.|.+..+|..+-..|..++.+|+++++ |-|
T Consensus 470 --~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATV-AFG 546 (941)
T KOG0351 470 --DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATV-AFG 546 (941)
T ss_pred --CCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEE-ECC
T ss_conf --31688988765128999837996882319999999987352057552678878889999998568870899985-224
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 1622001785999908998986864456666202202037877528999
Q gi|255764515|r 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 374 ~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
.|||-.. ...||||.+|-+...+-|-.||. -|.|+...|..|+
T Consensus 547 MGIdK~D-VR~ViH~~lPks~E~YYQE~GRA-----GRDG~~s~C~l~y 589 (941)
T KOG0351 547 MGIDKPD-VRFVIHYSLPKSFEGYYQEAGRA-----GRDGLPSSCVLLY 589 (941)
T ss_pred CCCCCCC-EEEEEECCCCHHHHHHHHHCCCC-----CCCCCCCEEEEEC
T ss_conf 7877786-35999777861478888740336-----7678800267742
No 78
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.60 E-value=1.2e-12 Score=94.85 Aligned_cols=157 Identities=14% Similarity=0.034 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHC---C-CEEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 747899999999967---9-80999588998689999999999975---9994999916046569999999985588881
Q gi|255764515|r 3 LAPHQTKIVDWILDH---K-RCAIWASMGSGKTVSVLTALSYIHLW---GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHM 75 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~---~-~~ll~~~~G~GKT~~al~~~~~l~~~---~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~ 75 (458)
.+|+|..+++..... . ...|-+++|.|||..++..+...... ...+++.|.|-+.+.++-.+.+..+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 13556799999873225575189991688871999999999975311354562899655899999999999875123554
Q ss_pred EEEEEECCHHHHHHHHCC-CCCEEEECCCCHHHH----------------HHHC----CCCCCCCEEECCCCCCCCCCCC
Q ss_conf 599985897898887307-798699806420233----------------4420----0011322044045310024654
Q gi|255764515|r 76 NISVITGTVKQRTKVLKT-PAVLYVINFENLGWL----------------VQEL----KGTWPFATIVVDESTKLKSFRL 134 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~~-~~~i~i~s~e~~~~~----------------~~~~----~~~~~~~~iIiDEaH~lkn~~~ 134 (458)
.....+|........... .....+++.++..+. .... .......++|+||.|.+ +..+
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~-~~~~ 354 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY-ADET 354 (733)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHHHC-CCCC
T ss_conf 331001310255651701002258881242236204522206999855740466725778876467787427541-6543
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 311567777665430598079965840
Q gi|255764515|r 135 RQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 135 ~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
...-....+..+......++++|||+
T Consensus 355 -~~~~l~~~i~~l~~~g~~ill~SATl 380 (733)
T COG1203 355 -MLAALLALLEALAEAGVPVLLMSATL 380 (733)
T ss_pred -HHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -08999999999996899789992789
No 79
>KOG0345 consensus
Probab=99.59 E-value=2.3e-12 Score=93.17 Aligned_cols=301 Identities=19% Similarity=0.222 Sum_probs=171.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHH-CCC---C--CEEEEECCHHHHHHHHHHHHHHCC-CC
Q ss_conf 8747899999999967980999588998689999-99999997-599---9--499991604656999999998558-88
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVL-TALSYIHL-WGE---K--SVLVIAPLRVAQSVWTSEVQRWSN-FS 73 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al-~~~~~l~~-~~~---~--~~LIv~P~~l~~~~W~~Ei~kf~~-~~ 73 (458)
++-|-|..++-.++.++-..+-..+|+|||+-=+ -+++.+.. .+. . ..|||+|+.-+..|-.+-+.-|.. .+
T Consensus 28 ~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~ 107 (567)
T KOG0345 28 KMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLP 107 (567)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 36877874667885278568985678871066899999999861157896512479965719999999999999998503
Q ss_pred CCEEEEEECCH--HHHHHHHC-CCCCEEEECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 81599985897--89888730-7798699806420233442---000113220440453100246543115677776654
Q gi|255764515|r 74 HMNISVITGTV--KQRTKVLK-TPAVLYVINFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKP 147 (458)
Q Consensus 74 ~~~~~~~~g~~--~~r~~~~~-~~~~i~i~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~ 147 (458)
.+++..+.|.. .+..+.+. ....|+|.|...+...... ......-.++|+|||-++-..+ -....+.+...
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmg---Fe~~~n~ILs~ 184 (567)
T KOG0345 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMG---FEASVNTILSF 184 (567)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCHHHCCCCCCCCEEEECCHHHHHCCC---HHHHHHHHHHH
T ss_conf 654599976864777999999709958994762499998453000361331157751467674432---79999999986
Q ss_pred HHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 30598079965840231001013467751788877532778877736956403300002455554558999997424-54
Q gi|255764515|r 148 AWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSD-CC 226 (458)
Q Consensus 148 ~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 226 (458)
-++.++.=+-|||-.+ ...||. ..-+.+ .-
T Consensus 185 LPKQRRTGLFSATq~~-~v~dL~------------------------------------------------raGLRNpv~ 215 (567)
T KOG0345 185 LPKQRRTGLFSATQTQ-EVEDLA------------------------------------------------RAGLRNPVR 215 (567)
T ss_pred CCCCCCCCCCEEHHHH-HHHHHH------------------------------------------------HHHCCCCEE
T ss_conf 6210002443002146-688999------------------------------------------------853568636
Q ss_pred HHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCC
Q ss_conf 33200001001001100034524536899888999999851033452022347888875420354100022343000134
Q gi|255764515|r 227 LSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHD 306 (458)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~ 306 (458)
+.+..+.... +|..... ........
T Consensus 216 V~V~~k~~~~-------------tPS~L~~------------------------------------------~Y~v~~a~ 240 (567)
T KOG0345 216 VSVKEKSKSA-------------TPSSLAL------------------------------------------EYLVCEAD 240 (567)
T ss_pred EEECCCCCCC-------------CCHHHHH------------------------------------------EEEEECHH
T ss_conf 5412344555-------------8423111------------------------------------------25675778
Q ss_pred CCCCCHHHHHHCCCCCEEEEHHH-------HHHHHHHHHH-----CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCC
Q ss_conf 33332566541248840342223-------6788866410-----00265334458998764245885589984422111
Q gi|255764515|r 307 EKIKALEVIIEKANAAPIIVAYH-------FNSDLARLQK-----AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 374 (458)
Q Consensus 307 ~k~~~l~~il~~~~~~kviif~~-------~~~~~~~i~~-----~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~ 374 (458)
.|+..+.+++.....+|+|||.. |...+..+.. .+++-...+.|...++.|.+....+|+|+ ++++-
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T-DVaAR 319 (567)
T KOG0345 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT-DVAAR 319 (567)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHHHHCCCCEEEEE-HHHHC
T ss_conf 88999999996245462799934754099999888876078747986220123468899999871568618860-45553
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCC
Q ss_conf 622001785999908998986864456666202202037
Q gi|255764515|r 375 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 413 (458)
Q Consensus 375 GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~G 413 (458)
|||+. .-+.||.||||-+|..+.-+.||-. |+.|.|
T Consensus 320 GlDip-~iD~VvQ~DpP~~~~~FvHR~GRTa--R~gr~G 355 (567)
T KOG0345 320 GLDIP-GIDLVVQFDPPKDPSSFVHRCGRTA--RAGREG 355 (567)
T ss_pred CCCCC-CCEEEEECCCCCCHHHHHHHCCHHH--HCCCCC
T ss_conf 68988-9707997079998147777412144--356766
No 80
>KOG0951 consensus
Probab=99.58 E-value=7.1e-13 Score=96.24 Aligned_cols=337 Identities=17% Similarity=0.196 Sum_probs=158.1
Q ss_pred CCCEEEEECCCCCHHHHHH-HHHHHHHHC---------CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHH
Q ss_conf 7980999588998689999-999999975---------999499991604656999999998558888159998589789
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVL-TALSYIHLW---------GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQ 86 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al-~~~~~l~~~---------~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~ 86 (458)
..+.+++.++|+|||-.|+ .++..+... +..++..|+|--.+.+.|...|.++....++.|.-.+|+...
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLVqE~VgsfSkRla~~GItV~ElTgD~~l 404 (1674)
T KOG0951 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 67378742678882379999999998535454454102561379984289999999988886423567179873265410
Q ss_pred HHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCH-HHHHHHHHH--HHHCCCEEEEECCC
Q ss_conf 888730779869980642023344200---011322044045310024654311-567777665--43059807996584
Q gi|255764515|r 87 RTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQG-SKTARALAK--PAWESERFIELTGT 160 (458)
Q Consensus 87 r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~-s~~~~~l~~--~~~~~~~~l~LTgT 160 (458)
-...+. ..++++++.|...-.-+.-. ..--+.++|+||-|-+-..++..- |-..|.... -.....+.++||||
T Consensus 405 ~~~qie-eTQVIVtTPEKwDiITRk~gdraY~qlvRLlIIDEIHLLhDdRGpVLESIVaRt~r~ses~~e~~RlVGLSAT 483 (1674)
T KOG0951 405 GKEQIE-ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSAT 483 (1674)
T ss_pred HHHHHH-CCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 044321-2202870642222111046742388888887654443215566407889999999986512457436410155
Q ss_pred CHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 02310010134677517888775327788777369564033000024555545589999974245433200001001001
Q gi|255764515|r 161 PSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240 (458)
Q Consensus 161 Pi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 240 (458)
.+| ..|.-+.+..-.++ ++.+-.+|+.-... +- ..+.....+..+ .+.+.+.++....+-... .+
T Consensus 484 -LPN-y~DV~~Fl~v~~~g--lf~fd~syRpvPL~--qq--~Igitek~~~~~-----~qamNe~~yeKVme~agk--~q 548 (1674)
T KOG0951 484 -LPN-YEDVASFLRVDPEG--LFYFDSSYRPVPLK--QQ--YIGITEKKPLKR-----FQAMNEACYEKVLEHAGK--NQ 548 (1674)
T ss_pred -CCC-HHHHHHHHCCCCCC--CCCCCCCCCCCCCC--CE--EECCCCCCCHHH-----HHHHHHHHHHHHHHHCCC--CC
T ss_conf -786-16557775558532--41357555767764--14--763303780677-----777789999999973787--85
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCC
Q ss_conf 10003452453689988899999985103345202234788887542035410002234300013433332566541248
Q gi|255764515|r 241 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 320 (458)
Q Consensus 241 ~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~~~~ 320 (458)
.. +.|.-..+..+.-..++...+ + + +.+.+.++-- +... +.-..+....|-.-|.+++.-
T Consensus 549 VL--VFVHsRKET~ktA~aIRd~~l-e---~-----dtls~fmre~---s~s~----eilrtea~~~kn~dLkdLLpy-- 608 (1674)
T KOG0951 549 VL--VFVHSRKETAKTARAIRDKAL-E---E-----DTLSRFMRED---SASR----EILRTEAGQAKNPDLKDLLPY-- 608 (1674)
T ss_pred EE--EEEEECHHHHHHHHHHHHHHH-H---H-----HHHHHHHHCC---CCHH----HHHHHHHHCCCCHHHHHHHHC--
T ss_conf 89--999833578899999999886-4---5-----3799987634---4114----565544420158307877313--
Q ss_pred CCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEE----EECC---CC-
Q ss_conf 840342223678886641000265334458998764245885589984422111622001785999----9089---98-
Q gi|255764515|r 321 AAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV----FFSL---WW- 392 (458)
Q Consensus 321 ~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI----~~~~---~w- 392 (458)
| +.. -+.|.+...|...-+.|.+|+.+|++. +++.+-|+||. |..++| .||+ -|
T Consensus 609 g----faI------------HhAGl~R~dR~~~EdLf~~g~iqvlvs-tatlawgvnlp-ahtViikgtqvy~pekg~w~ 670 (1674)
T KOG0951 609 G----FAI------------HHAGLNRKDRELVEDLFADGHIQVLVS-TATLAWGVNLP-AHTVIIKGTQVYDPEKGRWT 670 (1674)
T ss_pred C----CEE------------ECCCCCCCHHHHHHHHHHCCCEEEEEE-EHHHHHHCCCC-CCEEEECCCCCCCCCCCCCC
T ss_conf 5----133------------116778623778999874486268875-02456424777-62689607621583457666
Q ss_pred --CHHHHHHHHHHHHCC
Q ss_conf --986864456666202
Q gi|255764515|r 393 --DLEEHQQMIERIGVT 407 (458)
Q Consensus 393 --n~~~~~Q~~gRi~~~ 407 (458)
+|.+..|..||.-|.
T Consensus 671 elsp~dv~qmlgragrp 687 (1674)
T KOG0951 671 ELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred CCCHHHHHHHHHHCCCC
T ss_conf 27879999997544897
No 81
>KOG0348 consensus
Probab=99.58 E-value=2.1e-12 Score=93.45 Aligned_cols=373 Identities=18% Similarity=0.185 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHCC-------CCCEEEEECCHHHHHHHHHHHHHHCCCCCC--
Q ss_conf 899999999967980999588998689999-9999999759-------994999916046569999999985588881--
Q gi|255764515|r 6 HQTKIVDWILDHKRCAIWASMGSGKTVSVL-TALSYIHLWG-------EKSVLVIAPLRVAQSVWTSEVQRWSNFSHM-- 75 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al-~~~~~l~~~~-------~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~-- 75 (458)
-|..++-.+++.+-.++-..+|+|||+.=+ -++..|.... .--.|||||+.-+-.|-++-+.|.....++
T Consensus 163 VQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIV 242 (708)
T KOG0348 163 VQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIV 242 (708)
T ss_pred HHHCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 76502035525863478857788621799999999997268655556883489980419999999999998725743773
Q ss_pred EEEEEECCHHHHHHH-HCCCCCEEEECCCCHHHHHHHCCCCCC-----CCEEECCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 599985897898887-307798699806420233442000113-----220440453100246543-1156777766543
Q gi|255764515|r 76 NISVITGTVKQRTKV-LKTPAVLYVINFENLGWLVQELKGTWP-----FATIVVDESTKLKSFRLR-QGSKTARALAKPA 148 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~-~~~~~~i~i~s~e~~~~~~~~~~~~~~-----~~~iIiDEaH~lkn~~~~-~~s~~~~~l~~~~ 148 (458)
-..++.|..+..++. +...-.|+|-|...+. ++++.... -.-||+|||-++-..+-. .-++..+++....
T Consensus 243 Pg~lmGGEkkKSEKARLRKGiNILIgTPGRLv---DHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~ 319 (708)
T KOG0348 243 PGVLMGGEKKKSEKARLRKGINILIGTPGRLV---DHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQ 319 (708)
T ss_pred ECEEECCCCCCCHHHHHHCCCEEEECCCHHHH---HHHHCCCHHEEEEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 02122363310178887548548975842788---987430022100356898534367876243003999999875002
Q ss_pred H-CC--------CEEEEECCCCHH--HHCCCHHHHHHHCCCCC-CCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 0-59--------807996584023--10010134677517888-775327788777369564033000024555545589
Q gi|255764515|r 149 W-ES--------ERFIELTGTPSP--NGLIDLWGQIWFLDKGK-RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQK 216 (458)
Q Consensus 149 ~-~~--------~~~l~LTgTPi~--n~~~el~~ll~~l~~~~-~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (458)
. .+ .-.++||||-.. |++.|+ .+=||-. .+....... . +...+..
T Consensus 320 ~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~----sLkDpv~I~ld~s~~~~-----------------~--p~~~a~~ 376 (708)
T KOG0348 320 NAECKDPKLPHQLQNMLLSATLTDGVNRLADL----SLKDPVYISLDKSHSQL-----------------N--PKDKAVQ 376 (708)
T ss_pred CHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC----CCCCCEEEECCCHHHHC-----------------C--CCHHHHH
T ss_conf 00102556637877676665567778887633----15685564043012203-----------------8--6314566
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHCCCCCCCC
Q ss_conf 99997424543320000100100110003452453689988899999985103345202234788887-54203541000
Q gi|255764515|r 217 EIEAQLSDCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVK-CLQLANGAVYY 295 (458)
Q Consensus 217 ~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~q~~~~~~~~ 295 (458)
++-. . ..-..-+...+|........|--+.--.-.+..+....+..........+.+...... .-.+-++....
T Consensus 377 ev~~----~-~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348 377 EVDD----G-PAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred HCCC----C-CCCCCCCCCCCCHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 3377----5-3456320123868765006852874108999999999865444230699996325789999999865402
Q ss_pred CCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCC
Q ss_conf 22343000134333325665412488403422236788866410002653344589987642458855899844221116
Q gi|255764515|r 296 DEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 375 (458)
Q Consensus 296 ~~~~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~G 375 (458)
..+...... ...|.+ ..-++.-..+++++++..+|....+.|....-.||+|+ ++++-|
T Consensus 452 ~~e~~s~~~-------------~s~g~~-------~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcT-DVAaRG 510 (708)
T KOG0348 452 HLEGSSGAP-------------DSEGLP-------PLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCT-DVAARG 510 (708)
T ss_pred CCCCCCCCC-------------CCCCCH-------HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEH-HHHHCC
T ss_conf 323666786-------------667981-------03314637884274348899999875303544278850-345426
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 22001785999908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 376 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 376 lnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
|||.+- ..||-||+|++++++.-++||-. |+|.+-. ...|.++...| ....+..+
T Consensus 511 LDlP~V-~~vVQYd~P~s~adylHRvGRTA-----RaG~kG~--alLfL~P~Eae--y~~~l~~~ 565 (708)
T KOG0348 511 LDLPHV-GLVVQYDPPFSTADYLHRVGRTA-----RAGEKGE--ALLFLLPSEAE--YVNYLKKH 565 (708)
T ss_pred CCCCCC-CEEEEECCCCCHHHHHHHHHHHH-----HCCCCCC--EEEEECCCHHH--HHHHHHHH
T ss_conf 888776-76998279998899999840454-----3467771--57886651799--99988750
No 82
>KOG0344 consensus
Probab=99.57 E-value=4.5e-14 Score=103.50 Aligned_cols=300 Identities=17% Similarity=0.178 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC------CCCCEEEEECCHHHHHHHHHHHHHHC--CCCCC
Q ss_conf 789999999996798099958899868999-9999999975------99949999160465699999999855--88881
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW------GEKSVLVIAPLRVAQSVWTSEVQRWS--NFSHM 75 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~------~~~~~LIv~P~~l~~~~W~~Ei~kf~--~~~~~ 75 (458)
|-|..++-.++..+.++-+.++|+|||+.= +-.+.+|... ..-..+|+.|...+.+|-..|+.+.. .....
T Consensus 161 ~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~ 240 (593)
T KOG0344 161 PIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSL 240 (593)
T ss_pred CCCCHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 31001156664133058863578862056556999999875203576542788844449999999999985577778753
Q ss_pred EEEEEECC---HHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 59998589---789888730779869980642023344200---011322044045310024654311567777665430
Q gi|255764515|r 76 NISVITGT---VKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 76 ~~~~~~g~---~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
...-+..+ .++........+++.+.|.-.+..+...-. .......+|+|||-.+.++ ..-..+....+..+..
T Consensus 241 ~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s 319 (593)
T KOG0344 241 RAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP-EFFVEQLADIYSACQS 319 (593)
T ss_pred HHHHCCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHEEEEEEECHHHHHHCH-HHHHHHHHHHHHHHCC
T ss_conf 455166665311033246777887886187999998558975320120356766468765081-5699999999998528
Q ss_pred CCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59807996584023100101346775178887753277887773695640330000245555455899999742454332
Q gi|255764515|r 150 ESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSL 229 (458)
Q Consensus 150 ~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 229 (458)
..-++=+.|||- ..++++|+.......
T Consensus 320 ~~i~~a~FSat~-------------------------~~~VEE~~~~i~~~~---------------------------- 346 (593)
T KOG0344 320 PDIRVALFSATI-------------------------SVYVEEWAELIKSDL---------------------------- 346 (593)
T ss_pred CCHHHHHHHCCC-------------------------CHHHHHHHHHHHCCC----------------------------
T ss_conf 522256632146-------------------------077999999865053----------------------------
Q ss_pred HCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 00001001001100034524536899888999999851033452022347888875420354100022343000134333
Q gi|255764515|r 230 DIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKI 309 (458)
Q Consensus 230 ~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~ 309 (458)
..+.+...+.+....+ .++. ...-...|+
T Consensus 347 -------------~~vivg~~~sa~~~V~---Qelv-----------------------------------F~gse~~K~ 375 (593)
T KOG0344 347 -------------KRVIVGLRNSANETVD---QELV-----------------------------------FCGSEKGKL 375 (593)
T ss_pred -------------EEEEEECCHHHHHHHH---HHHE-----------------------------------EEECCHHHH
T ss_conf -------------3689842525765545---5512-----------------------------------110434577
Q ss_pred CCHHHHHHCCCCCEEEEHHHHHHHHHHHHH-----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 325665412488403422236788866410-----------002653344589987642458855899844221116220
Q gi|255764515|r 310 KALEVIIEKANAAPIIVAYHFNSDLARLQK-----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 310 ~~l~~il~~~~~~kviif~~~~~~~~~i~~-----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
-++.+++...-.-+++||-+...-...+.. .+++..+..+|.+.+++|..|++.||+|+ ...+-||+|
T Consensus 376 lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-dll~RGiDf 454 (593)
T KOG0344 376 LALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-DLLARGIDF 454 (593)
T ss_pred HHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEH-HHHHCCCCC
T ss_conf 8899998615899748988538889999998642357663467636666677899999850670688850-466545564
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCC
Q ss_conf 01785999908998986864456666202202037877
Q gi|255764515|r 379 QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKR 416 (458)
Q Consensus 379 ~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~ 416 (458)
+ +.|.||+||.|-+-..+.-++||.. |.|+.-
T Consensus 455 ~-gvn~VInyD~p~s~~syihrIGRtg-----Rag~~g 486 (593)
T KOG0344 455 K-GVNLVINYDFPQSDLSYIHRIGRTG-----RAGRSG 486 (593)
T ss_pred C-CCCEEEECCCCCHHHHHHHHHHCCC-----CCCCCC
T ss_conf 5-7636895378722478888730257-----889886
No 83
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.56 E-value=5.3e-13 Score=96.99 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC---CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 874789999999996798099958899868999-9999999975---999499991604656999999998558888159
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW---GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~---~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
++.|-|..++-.+++.+..++.+++|+|||+.- +-++..+... +...+||+||+.-+..|-.+++.++.....+++
T Consensus 21 ~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~ 100 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKV 100 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999999997799889975799722288886999998616676896699996879999999999998505798389
Q ss_pred EEEECCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 9985897--8988873077986998064202334420-001132204404531002465431156777766543059807
Q gi|255764515|r 78 SVITGTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERF 154 (458)
Q Consensus 78 ~~~~g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~ 154 (458)
....|.. ......+....+++|.|...+....+.. .....-.++|+|||+.+-+.+- ..-...+.+...+...+
T Consensus 101 ~~~~gg~~~~~~~~~l~~~~~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~gf---~~~i~~I~~~l~~~~Q~ 177 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF---EDQIREILKLLPKDRQT 177 (203)
T ss_pred EEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCC---HHHHHHHHHHCCCCCEE
T ss_conf 998389887999999853875999681899999984886513224899985888874776---99999999858967779
Q ss_pred EEECCCCHHHHCCC
Q ss_conf 99658402310010
Q gi|255764515|r 155 IELTGTPSPNGLID 168 (458)
Q Consensus 155 l~LTgTPi~n~~~e 168 (458)
++.|||- +..+.+
T Consensus 178 ~lfSAT~-~~~v~~ 190 (203)
T cd00268 178 LLFSATM-PKEVRD 190 (203)
T ss_pred EEEEECC-CHHHHH
T ss_conf 9998049-988999
No 84
>KOG0336 consensus
Probab=99.55 E-value=8.7e-12 Score=89.65 Aligned_cols=110 Identities=13% Similarity=0.260 Sum_probs=80.9
Q ss_pred CCCHHHHHHC-CCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 3325665412-488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 309 IKALEVIIEK-ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 309 ~~~l~~il~~-~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
+..+..+++. +...|+|||+.-+.+.+.+.. .++++.....|+.+++.|+.|+++||+++ +.++-||+
T Consensus 452 ~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT-DlaSRGlD 530 (629)
T KOG0336 452 LEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVAT-DLASRGLD 530 (629)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CHHHCCCC
T ss_conf 99999999855888618999831032210231021146101102587224359999976415816999972-23433788
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 00178599990899898686445666620220203787752899998589
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
+... ++|++||.|-|-..+--++||. .|+.|.| +. .-+++.+
T Consensus 531 v~Di-THV~NyDFP~nIeeYVHRvGrt--GRaGr~G----~s-is~lt~~ 572 (629)
T KOG0336 531 VPDI-THVYNYDFPRNIEEYVHRVGRT--GRAGRTG----TS-ISFLTRN 572 (629)
T ss_pred CHHC-CEEECCCCCCCHHHHHHHHCCC--CCCCCCC----CE-EEEEEHH
T ss_conf 2002-0354057875599999871235--6577776----32-7888630
No 85
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.54 E-value=5.1e-11 Score=85.00 Aligned_cols=323 Identities=19% Similarity=0.250 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH-HH-CCCCCC
Q ss_conf 87478999999999----6798099958899868999999999997599949999160465699999999-85-588881
Q gi|255764515|r 2 NLAPHQTKIVDWIL----DHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQ-RW-SNFSHM 75 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~----~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~-kf-~~~~~~ 75 (458)
+|-|+|..+.+.++ ++.-.++.+-+|+|||=+.-..++.....| .++.|..|.-- . .-|+. ++ ..++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvD---V-clEl~~Rlk~aF~~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVD---V-CLELYPRLKQAFSNC 171 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCC-CEEEEECCCCC---C-HHHHHHHHHHHHCCC
T ss_conf 327247899999999987157689997427985101699999999659-86998468610---1-177789999762149
Q ss_pred EEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 59998589789888730779869980642023344200011322044045310024654311567777665430598079
Q gi|255764515|r 76 NISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
++..++|++..... .-.++.++++.++ ....||++|+||.-.+ |-. ......-++.+....-...+
T Consensus 172 ~I~~Lyg~S~~~fr----~plvVaTtHQLlr-------Fk~aFD~liIDEVDAF--P~~-~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR----APLVVATTHQLLR-------FKQAFDLLIIDEVDAF--PFS-DDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CEEEEECCCCHHCC----CCEEEEEHHHHHH-------HHHHCCEEEEECCCCC--CCC-CCHHHHHHHHHHHCCCCCEE
T ss_conf 86667258713133----4479976688888-------8864338998302456--566-78889999997512367369
Q ss_pred EECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 96584023100101346775178887753277887773695640330000245555455899999742454332000010
Q gi|255764515|r 156 ELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQ 235 (458)
Q Consensus 156 ~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 235 (458)
.|||||-..=-.+ +..+ . +....+ .....
T Consensus 238 ylTATp~k~l~r~-------~~~g-------------------------------------~----~~~~kl---p~RfH 266 (441)
T COG4098 238 YLTATPTKKLERK-------ILKG-------------------------------------N----LRILKL---PARFH 266 (441)
T ss_pred EEECCCHHHHHHH-------HHHC-------------------------------------C----EEEEEC---CHHHC
T ss_conf 9964880788887-------5407-------------------------------------7----567634---46543
Q ss_pred CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC-CHHH
Q ss_conf 010011000345245368998889999998510334520223478888754203541000223430001343333-2566
Q gi|255764515|r 236 NIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIK-ALEV 314 (458)
Q Consensus 236 ~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~-~l~~ 314 (458)
.-|.+.....+.... .+.. .-+|+. ++..
T Consensus 267 ~~pLpvPkf~w~~~~---~k~l-----------------------------------------------~r~kl~~kl~~ 296 (441)
T COG4098 267 GKPLPVPKFVWIGNW---NKKL-----------------------------------------------QRNKLPLKLKR 296 (441)
T ss_pred CCCCCCCCEEEECCH---HHHH-----------------------------------------------HHCCCCHHHHH
T ss_conf 899898742886447---7776-----------------------------------------------64447789999
Q ss_pred HHHC--CCCCEEEEHHHHHHHHHHHHHCCCC----------CCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCC
Q ss_conf 5412--4884034222367888664100026----------533445899876424588558998442211162200178
Q gi|255764515|r 315 IIEK--ANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 382 (458)
Q Consensus 315 il~~--~~~~kviif~~~~~~~~~i~~~~~~----------g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~ 382 (458)
+++. .+|.+++||..-...+......+.. .+....|.+.++.|++|+..+|+.+ .-..-|+++.. .
T Consensus 297 ~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-TILERGVTfp~-v 374 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITT-TILERGVTFPN-V 374 (441)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEE-EHHHCCCCCCC-C
T ss_conf 999987438828999250588999999998618864215653367017899999875863899984-40332664356-2
Q ss_pred CEEEEECCC--CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 599990899--89868644566662022020378775289999858996899999999999999999855413745
Q gi|255764515|r 383 NILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETI 456 (458)
Q Consensus 383 ~~iI~~~~~--wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~~~~~~ 456 (458)
++.++-.-+ ++.+.+.|.-||+- |+++.- +-.| ++| ..| +-..|.+...+=++++.. +.+++.+
T Consensus 375 dV~Vlgaeh~vfTesaLVQIaGRvG--Rs~~~P-tGdv--~FF-H~G-~skaM~~A~keIk~MN~l---g~k~~~~ 440 (441)
T COG4098 375 DVFVLGAEHRVFTESALVQIAGRVG--RSLERP-TGDV--LFF-HYG-KSKAMKQARKEIKEMNKL---GFKRGLI 440 (441)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCC--CCCCCC-CCCE--EEE-ECC-CHHHHHHHHHHHHHHHHH---HHHCCCC
T ss_conf 3999547764201889999752316--787689-8758--999-646-338999999999999887---6442046
No 86
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family; InterPro: IPR004473 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the R subunit (HsdR) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC; the R protein (HsdR) is required for both nuclease and ATPase activity , , , .; GO: 0003677 DNA binding, 0005524 ATP binding, 0009035 Type I site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system.
Probab=99.53 E-value=1.5e-13 Score=100.40 Aligned_cols=161 Identities=18% Similarity=0.252 Sum_probs=97.8
Q ss_pred HHHHHHHHHHH----------CC-CEEEEECCCCCHHHHHHHHHHHHH--H-CCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 89999999996----------79-809995889986899999999999--7-5999499991604656999999998558
Q gi|255764515|r 6 HQTKIVDWILD----------HK-RCAIWASMGSGKTVSVLTALSYIH--L-WGEKSVLVIAPLRVAQSVWTSEVQRWSN 71 (458)
Q Consensus 6 ~Q~~~v~~~~~----------~~-~~ll~~~~G~GKT~~al~~~~~l~--~-~~~~~~LIv~P~~l~~~~W~~Ei~kf~~ 71 (458)
||..||+.+.+ .+ +|++.|-.|+|||+|++-++..+. . .....+++||=..-+..|-..|+..+..
T Consensus 301 ~qy~av~ki~~~~~~~~~~k~~~n~G~iWHtQGSGKtlTm~f~A~k~~~~~~~~~p~v~fvvDR~eLd~Ql~~~~~~~~~ 380 (813)
T TIGR00348 301 MQYRAVKKIVESILRKEKGKDKRNKGLIWHTQGSGKTLTMLFLARKLRKQKELKNPKVFFVVDRRELDEQLYKEFSSLKD 380 (813)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99999999999998531378863674489850763788999999999874652698499997272778899999987642
Q ss_pred CCCCEEEEEECCHHHHHH-HHCCC----------CCEEEECCCCHHH----HHHHCCCCCCCC--------EEECCCCCC
Q ss_conf 888159998589789888-73077----------9869980642023----344200011322--------044045310
Q gi|255764515|r 72 FSHMNISVITGTVKQRTK-VLKTP----------AVLYVINFENLGW----LVQELKGTWPFA--------TIVVDESTK 128 (458)
Q Consensus 72 ~~~~~~~~~~g~~~~r~~-~~~~~----------~~i~i~s~e~~~~----~~~~~~~~~~~~--------~iIiDEaH~ 128 (458)
.-....--..+.+.... +-..+ ..+++++.+++.. ...+.....+|. .||+|||||
T Consensus 381 -~~~~~~~~~eS~~~Lk~~L~~~~~sennPn~~k~g~~~t~IqKF~~~~~~k~~e~~~~~~~~i~~~r~~vv~i~DEaHR 459 (813)
T TIGR00348 381 -LIKDCAERIESIAELKELLEKNDESENNPNISKRGIIITTIQKFDDELLDKLKEEEEKFPESIIIDRKEVVVIIDEAHR 459 (813)
T ss_pred -HCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCC
T ss_conf -0101042067888999987517764567553567679996001040344536888743873689871608999706755
Q ss_pred CCCCC------CCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
Q ss_conf 02465------43115677776654305980799658402310010
Q gi|255764515|r 129 LKSFR------LRQGSKTARALAKPAWESERFIELTGTPSPNGLID 168 (458)
Q Consensus 129 lkn~~------~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~e 168 (458)
=.-.. +.-.+..++.+.+...+| ..++=|||||.-.=.+
T Consensus 460 sqyG~tqklhnGkfqtGla~~~~~~lknA-~f~gFTGTPI~~~d~~ 504 (813)
T TIGR00348 460 SQYGKTQKLHNGKFQTGLAKALKKALKNA-SFFGFTGTPISKKDRD 504 (813)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCHHH-HHHCCCCCCCCHHCCC
T ss_conf 53534110004413589999998743112-0101224776532477
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.52 E-value=8.1e-11 Score=83.79 Aligned_cols=152 Identities=19% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCCHHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 8747899999999967---9809995889986899999999999759994999916046569999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDH---KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~---~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~ 78 (458)
.|.+.|..+++.+.+. ..+||...+|+|||-.-+.+++.....| +.+||++|-.-+..|+.+-+...++ .++.
T Consensus 168 ~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevYl~li~~~l~~G-kqvLiLvPEI~lt~q~~~rl~~~fg---~~v~ 243 (699)
T PRK05580 168 TLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVYLQAIAEALAQG-KQALVLVPEIALTPQLLARFRARFG---ARVA 243 (699)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHHHHHC---CCEE
T ss_conf 88999999999998558887178747898607999999999999739-9789991767878999999998709---9579
Q ss_pred EEEC--CHHHHHHHH----CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9858--978988873----0779869980642023344200011322044045310--0246543115677776654305
Q gi|255764515|r 79 VITG--TVKQRTKVL----KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 79 ~~~g--~~~~r~~~~----~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
+++. +..+|.+.| .+...|+|-+..++- ....+.++||+||=|. .|-..+..+..+--++.+....
T Consensus 244 v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF------aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~~~ 317 (699)
T PRK05580 244 VLHSGLSDGERYRAWLAALRGEARVVIGTRSALF------APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAKQE 317 (699)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE------CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9648898579999999997699719997360110------6578984899973654544466687611999999999984
Q ss_pred CCEEEEECCCCHH
Q ss_conf 9807996584023
Q gi|255764515|r 151 SERFIELTGTPSP 163 (458)
Q Consensus 151 ~~~~l~LTgTPi~ 163 (458)
...+++.||||.-
T Consensus 318 ~~~liLgSaTPSl 330 (699)
T PRK05580 318 GCPVVLGSATPSL 330 (699)
T ss_pred CCCEEECCCCCCH
T ss_conf 9988961689999
No 88
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.51 E-value=7.9e-13 Score=95.96 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=93.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHC-CCC
Q ss_conf 980999588998689999999999975-999499991604656999999998558888159998589789888730-779
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLK-TPA 95 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~-~~~ 95 (458)
++|++.|-.|+|||+++.-++..+... +...+++||=..-+..|-.++|..|........ -..+.......+. ...
T Consensus 274 ~~G~IWHtqGSGKTltm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~--~~~s~~~Lk~~l~~~~~ 351 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP--KAESTSELKELLEDGKG 351 (962)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHCCCC
T ss_conf 7238984069837899999999998365999699996728899999999999887632044--44579999999865898
Q ss_pred CEEEECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 86998064202334420---00113220440453100246543115677776654305980799658402310
Q gi|255764515|r 96 VLYVINFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNG 165 (458)
Q Consensus 96 ~i~i~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~ 165 (458)
.+++||.+++....... ....+.-.||+||||+-- +-...+.+.....+ ...++.||||+...
T Consensus 352 ~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ------~G~~~~~~~~~~~~-a~~~gFTGTPi~~~ 417 (962)
T COG0610 352 KIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ------YGELAKLLKKALKK-AIFIGFTGTPIFKE 417 (962)
T ss_pred CEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCC------CHHHHHHHHHHHCC-CEEEEEECCCCCCC
T ss_conf 48999710264333333200047876799986401035------60789999987036-70897517856402
No 89
>KOG1513 consensus
Probab=99.50 E-value=7.5e-13 Score=96.09 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=60.2
Q ss_pred HHHHCCCCCCEEEEEHHHCCCCCCCCCC-------CCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 7642458855899844221116220017-------859999089989868644566662022020378775289999858
Q gi|255764515|r 354 IQEWNEGKIPLLFAHPASCGHGLNLQYG-------GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 354 i~~f~~~~~~vli~s~~~~~~GlnL~~a-------~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
.++|-+|+-.|.|+| .|++-||.||.- ..+-|-+++||++.+-.|..||- ||-.|-+...+.+||+.
T Consensus 850 KqrFM~GeK~vAIIS-EAaSSGISLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRT-----HRSNQVsaPEYVFlIse 923 (1300)
T KOG1513 850 KQRFMDGEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRT-----HRSNQVSAPEYVFLISE 923 (1300)
T ss_pred HHHHCCCCCEEEEEE-HHHCCCCEEECCHHHHHHHHEEEEEEECCCCHHHHHHHHCCC-----CCCCCCCCCEEEEEEHH
T ss_conf 765236652245451-233168602021555420124799997773153899985633-----22465678717998544
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 996899999999999
Q gi|255764515|r 427 NTIDELVLQRLRTKS 441 (458)
Q Consensus 427 ~tide~i~~~~~~K~ 441 (458)
= .-|+-+..+..|+
T Consensus 924 L-AGErRFAS~VAKR 937 (1300)
T KOG1513 924 L-AGERRFASIVAKR 937 (1300)
T ss_pred H-CCCHHHHHHHHHH
T ss_conf 2-1324789999999
No 90
>KOG0947 consensus
Probab=99.49 E-value=7e-12 Score=90.21 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 87478999999999679809995889986899999999999759994999916046569999999985588881599985
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVIT 81 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~ 81 (458)
+|-++|++|+..+.......+|+.+-+|||+.|=++++.-.. +..+++.-.|-..+.||=.++|..-.+ ++..++
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-h~TR~iYTSPIKALSNQKfRDFk~tF~----DvgLlT 371 (1248)
T KOG0947 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-HMTRTIYTSPIKALSNQKFRDFKETFG----DVGLLT 371 (1248)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHH-HCCCEEECCHHHHHCCCHHHHHHHHCC----CCCEEE
T ss_conf 766789999999972781799713778843699999999886-355157526346540015788877426----665451
Q ss_pred CCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC-CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 897898887307798699806420233442000-1132204404531002465431156777766543059807996584
Q gi|255764515|r 82 GTVKQRTKVLKTPAVLYVINFENLGWLVQELKG-TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 82 g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~-~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
|+.+ ++.....+|+|-|-++...-.--. ...-+.||+||.|++.+.... .-.-..+ ...++--..++||||
T Consensus 372 GDvq-----inPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRG--vVWEEVi-IMlP~HV~~IlLSAT 443 (1248)
T KOG0947 372 GDVQ-----INPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERG--VVWEEVI-IMLPRHVNFILLSAT 443 (1248)
T ss_pred CCEE-----ECCCCCEEEEHHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCC--CCCEEEE-EECCCCCEEEEEECC
T ss_conf 4433-----2777546765699999987515543211336987403541441356--2210122-532554159998465
Q ss_pred CHHHH
Q ss_conf 02310
Q gi|255764515|r 161 PSPNG 165 (458)
Q Consensus 161 Pi~n~ 165 (458)
++|.
T Consensus 444 -VPN~ 447 (1248)
T KOG0947 444 -VPNT 447 (1248)
T ss_pred -CCCH
T ss_conf -7981
No 91
>KOG0341 consensus
Probab=99.47 E-value=7.8e-13 Score=96.00 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=85.8
Q ss_pred CCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCC
Q ss_conf 333325665412488403422236788866410----------0026533445899876424588558998442211162
Q gi|255764515|r 307 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 376 (458)
Q Consensus 307 ~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gl 376 (458)
+|+..+.+.+.+. .-+++|||.-+..++.|.+ ++++|.-.+.|...|+.|+.|+-+||+++ ++++-||
T Consensus 408 aKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT-DVASKGL 485 (610)
T KOG0341 408 AKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT-DVASKGL 485 (610)
T ss_pred HHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CCHHCCC
T ss_conf 0120699876127-9966998414567478999998725136874168656678889999865787458873-1000368
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 2001785999908998986864456666202202037877528999985899689999
Q gi|255764515|r 377 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 434 (458)
Q Consensus 377 nL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~ 434 (458)
+++.. .++|+||+|-.-..+--++||- .|-|.+ -...-|+.+++-+.-++
T Consensus 486 DFp~i-qHVINyDMP~eIENYVHRIGRT-----GRsg~~--GiATTfINK~~~esvLl 535 (610)
T KOG0341 486 DFPDI-QHVINYDMPEEIENYVHRIGRT-----GRSGKT--GIATTFINKNQEESVLL 535 (610)
T ss_pred CCCCC-HHHCCCCCHHHHHHHHHHHCCC-----CCCCCC--CEEEEEECCCCHHHHHH
T ss_conf 97450-4440478808899999971246-----778886--40222114563188898
No 92
>KOG0326 consensus
Probab=99.46 E-value=8.3e-13 Score=95.83 Aligned_cols=313 Identities=19% Similarity=0.227 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-CCCCEEEEECCH---HHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 789999999996798099958899868999-9999999975-999499991604---65699999999855888815999
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-GEKSVLVIAPLR---VAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-~~~~~LIv~P~~---l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
|-|++++-..+..+..|.-+--|+|||-.- |-.++.+... ..=..+|++|.. +..+|-..|+.|+. .+.+.+
T Consensus 110 PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~---~i~vmv 186 (459)
T KOG0326 110 PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL---GIKVMV 186 (459)
T ss_pred CCCCCCCCEEECCHHHHHHCCCCCCCCCCEECHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCC---CEEEEE
T ss_conf 75302354442351355550189887330441256652822100447999616326678879999986046---849999
Q ss_pred EECCHHHHHHHHC--CCCCEEEECCCCHHHHHHHCCC-CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 8589789888730--7798699806420233442000-113220440453100246543115677776654305980799
Q gi|255764515|r 80 ITGTVKQRTKVLK--TPAVLYVINFENLGWLVQELKG-TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 80 ~~g~~~~r~~~~~--~~~~i~i~s~e~~~~~~~~~~~-~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~ 156 (458)
.+|...-+.++.. ..-+++|-+...+-.+.+.--. ..+-.++|+|||..+-+..- ......+...-++.+..++
T Consensus 187 ttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F---~~~~e~li~~lP~~rQill 263 (459)
T KOG0326 187 TTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF---QPIVEKLISFLPKERQILL 263 (459)
T ss_pred ECCCCCCCCCEEEECCCEEEEECCCHHHHHHHHCCCCCCHHCEEEEECHHHHHHCHHH---HHHHHHHHHHCCCCCEEEE
T ss_conf 4388654432056158269997287178888862652200114787410554414145---6789999875785420467
Q ss_pred ECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 65840231001013467751788877532778877736956403300002455554558999997424543320000100
Q gi|255764515|r 157 LTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQN 236 (458)
Q Consensus 157 LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 236 (458)
-||| ++. ....|..++....
T Consensus 264 ySAT-FP~--------------------tVk~Fm~~~l~kP--------------------------------------- 283 (459)
T KOG0326 264 YSAT-FPL--------------------TVKGFMDRHLKKP--------------------------------------- 283 (459)
T ss_pred EECC-CCH--------------------HHHHHHHHHCCCC---------------------------------------
T ss_conf 6313-640--------------------5888999860586---------------------------------------
Q ss_pred CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 10011000345245368998889999998510334520223478888754203541000223430001343333256654
Q gi|255764515|r 237 IDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVII 316 (458)
Q Consensus 237 l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il 316 (458)
..+...-+++..-...|=.+ ...+.|+..|..+.
T Consensus 284 ----y~INLM~eLtl~GvtQyYaf------------------------------------------V~e~qKvhCLntLf 317 (459)
T KOG0326 284 ----YEINLMEELTLKGVTQYYAF------------------------------------------VEERQKVHCLNTLF 317 (459)
T ss_pred ----CEEEHHHHHHHCCHHHHEEE------------------------------------------ECHHHHHHHHHHHH
T ss_conf ----02204656320352321011------------------------------------------02355556499898
Q ss_pred HCCCCCEEEEHHHHHHHHHHHHHCCC----------CCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEE
Q ss_conf 12488403422236788866410002----------65334458998764245885589984422111622001785999
Q gi|255764515|r 317 EKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV 386 (458)
Q Consensus 317 ~~~~~~kviif~~~~~~~~~i~~~~~----------~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI 386 (458)
.+..=...|||||-..-++.+.+.+. .-+..+.|..+.-.|.+|.++.|+|| +..--||+.| |.|++|
T Consensus 318 skLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVct-DL~TRGIDiq-avNvVI 395 (459)
T KOG0326 318 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCT-DLFTRGIDIQ-AVNVVI 395 (459)
T ss_pred HHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH-HHHHCCCCCC-EEEEEE
T ss_conf 87500445999636317679898888616436677888877654245565432532012420-2330465541-025999
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 908998986864456666202202037877528999985899689999999999
Q gi|255764515|r 387 FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 387 ~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
+||.|-|+..+.-++||- .|.|- .-..+.|++-+ |...+..++++
T Consensus 396 NFDfpk~aEtYLHRIGRs-----GRFGh--lGlAInLitye--drf~L~~IE~e 440 (459)
T KOG0326 396 NFDFPKNAETYLHRIGRS-----GRFGH--LGLAINLITYE--DRFNLYRIEQE 440 (459)
T ss_pred ECCCCCCHHHHHHHCCCC-----CCCCC--CCEEEEEEEHH--HHHHHHHHHHH
T ss_conf 637887778999871677-----65787--62479987503--24438899998
No 93
>KOG4284 consensus
Probab=99.45 E-value=2e-11 Score=87.42 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCC-CCCCEEEEEECC
Q ss_conf 999999999679809995889986899-999999999759-99499991604656999999998558-888159998589
Q gi|255764515|r 7 QTKIVDWILDHKRCAIWASMGSGKTVS-VLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSN-FSHMNISVITGT 83 (458)
Q Consensus 7 Q~~~v~~~~~~~~~ll~~~~G~GKT~~-al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~-~~~~~~~~~~g~ 83 (458)
|..|+-.....--.++-.--|+||||. ++++...|.... .-..+||+|+.-+.-|-.+.|.+.++ +.+.++.++.|.
T Consensus 52 QaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGG 131 (980)
T KOG4284 52 QAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGG 131 (980)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 34321144315535898137888558998543022275667620699714356645799999986524457605899668
Q ss_pred HHHHHH-HHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 789888-73077986998064202334420-001132204404531002465431156777766543059807996584
Q gi|255764515|r 84 VKQRTK-VLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 84 ~~~r~~-~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
.....+ .-.....|+|-|...+..+.+.- .+.-..+++|+|||..+-....-+ -...-+....++.+.+++.|||
T Consensus 132 T~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq--~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284 132 TAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQ--DDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred CHHHHHHHHHHHCEEEECCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHCHHHHH--HHHHHHHHHCCHHHEEEEEECC
T ss_conf 5435556665402378438358899987067771102688843177663202478--8899999745000025677335
No 94
>KOG0339 consensus
Probab=99.45 E-value=6.2e-11 Score=84.49 Aligned_cols=289 Identities=19% Similarity=0.245 Sum_probs=160.9
Q ss_pred ECCCCCHHHHHHH-HHHHH----H-HCCCCCE-EEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC--CHHHHHHHHCCC
Q ss_conf 5889986899999-99999----9-7599949-999160465699999999855888815999858--978988873077
Q gi|255764515|r 24 ASMGSGKTVSVLT-ALSYI----H-LWGEKSV-LVIAPLRVAQSVWTSEVQRWSNFSHMNISVITG--TVKQRTKVLKTP 94 (458)
Q Consensus 24 ~~~G~GKT~~al~-~~~~l----~-~~~~~~~-LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g--~~~~r~~~~~~~ 94 (458)
.-+|+|||---+. .+.+. . ..|..|+ ||+||+.-+..|-..|+++|.....+++...+| +.-+..+.+...
T Consensus 267 AktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g 346 (731)
T KOG0339 267 AKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEG 346 (731)
T ss_pred EECCCCCHHHHHHHHHHHHCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCC
T ss_conf 21157505677777777741405206899976999806389999999999986311264278863687488877765027
Q ss_pred CCEEEECCCCHHHHHHHCC-CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHH
Q ss_conf 9869980642023344200-011322044045310024654311567777665430598079965840231001013467
Q gi|255764515|r 95 AVLYVINFENLGWLVQELK-GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQI 173 (458)
Q Consensus 95 ~~i~i~s~e~~~~~~~~~~-~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll 173 (458)
..++|+|.+.+-...+... ....-.++|+||+-++-..+ .....|.|......-...++.|||- .-++.
T Consensus 347 ~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmG---fe~qVrSI~~hirpdrQtllFsaTf-~~kIe------ 416 (731)
T KOG0339 347 AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMG---FEPQVRSIKQHIRPDRQTLLFSATF-KKKIE------ 416 (731)
T ss_pred CEEEEECHHHHHHHHHHHCCCCEEEEEEEEECHHHHHCCC---CHHHHHHHHHHCCCCCEEEEEECCC-HHHHH------
T ss_conf 7289966288899988603331003578871111131265---4798999986448864279860310-68899------
Q ss_pred HHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHH
Q ss_conf 75178887753277887773695640330000245555455899999742454332000010010011000345245368
Q gi|255764515|r 174 WFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKPILITKKVPLPQPV 253 (458)
Q Consensus 174 ~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~ 253 (458)
...+..|.+.+ ++...++...-. -++..|..-+.+
T Consensus 417 ------------------------------------------~lard~L~dpV-rvVqg~vgean~--dITQ~V~V~~s~ 451 (731)
T KOG0339 417 ------------------------------------------KLARDILSDPV-RVVQGEVGEANE--DITQTVSVCPSE 451 (731)
T ss_pred ------------------------------------------HHHHHHHCCCE-EEEEEEHHCCCC--CHHHEEEECCCC
T ss_conf ------------------------------------------99999735972-678740102566--524246523681
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHH--
Q ss_conf 998889999998510334520223478888754203541000223430001343333256654124884034222367--
Q gi|255764515|r 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFN-- 331 (458)
Q Consensus 254 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~-- 331 (458)
.+.+.-+.+.+. +.....++|+|..-+
T Consensus 452 ~~Kl~wl~~~L~---------------------------------------------------~f~S~gkvlifVTKk~~ 480 (731)
T KOG0339 452 EKKLNWLLRHLV---------------------------------------------------EFSSEGKVLIFVTKKAD 480 (731)
T ss_pred HHHHHHHHHHHH---------------------------------------------------HHCCCCCEEEEEECCCC
T ss_conf 788899999755---------------------------------------------------01367847999942278
Q ss_pred --HHHHHHH------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf --8886641------00026533445899876424588558998442211162200178599990899898686445666
Q gi|255764515|r 332 --SDLARLQ------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIER 403 (458)
Q Consensus 332 --~~~~~i~------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gR 403 (458)
.....|. ..+++++-..+|.+.+.+|+.+..+||+++ +.++-|++.... ..||+||.--+-..+.|++||
T Consensus 481 ~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlvat-DvaargldI~~i-kTVvnyD~ardIdththrigr 558 (731)
T KOG0339 481 AEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVAT-DVAARGLDIPSI-KTVVNYDFARDIDTHTHRIGR 558 (731)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE-EHHHCCCCCCCC-CEEECCCCCCHHHHHHHHHHH
T ss_conf 999998732056325652274566777779998762477548884-076517875220-102343222106778877510
Q ss_pred HHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 620220203787752899998589
Q gi|255764515|r 404 IGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 404 i~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
-- |-|-+ . ..|-||++.
T Consensus 559 tg-----Rag~k-G-vayTlvTeK 575 (731)
T KOG0339 559 TG-----RAGEK-G-VAYTLVTEK 575 (731)
T ss_pred CC-----CCCCC-C-EEEEEECHH
T ss_conf 23-----35556-5-136873355
No 95
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.43 E-value=5e-11 Score=85.07 Aligned_cols=125 Identities=20% Similarity=0.220 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC-CEEEE-E
Q ss_conf 747899999999967980999588998689999999999975999499991604656999999998558888-15999-8
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSH-MNISV-I 80 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~-~~~~~-~ 80 (458)
+.-.|..=+..++.+..+.+.+++|+|||---+.++.++-..| ++++||+|++++..|=.+-+.+|..... .++.+ +
T Consensus 83 ~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~y 161 (1187)
T COG1110 83 PWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVY 161 (1187)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 6078899999987378448982788765479999999987558-749999667899999999999988653785246653
Q ss_pred ECC--HHHHHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 589--789888----7307798699806420233442000113220440453100
Q gi|255764515|r 81 TGT--VKQRTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKL 129 (458)
Q Consensus 81 ~g~--~~~r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~l 129 (458)
++. .+++.+ +-+++.+|+|+|-+.+....+.+.. .+||+|.+|..-.+
T Consensus 162 h~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~ 215 (1187)
T COG1110 162 HSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAI 215 (1187)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCC-CCCCEEEECCHHHH
T ss_conf 1236657799999998659963999747878866998404-57778998047889
No 96
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.42 E-value=3.4e-10 Score=79.99 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=53.7
Q ss_pred CCHHHHHHCCCCCEEEEHHHHHH---HHHHHHHC--------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 32566541248840342223678---88664100--------02653344589987642458855899844221116220
Q gi|255764515|r 310 KALEVIIEKANAAPIIVAYHFNS---DLARLQKA--------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 310 ~~l~~il~~~~~~kviif~~~~~---~~~~i~~~--------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
+.+..+++..+|.-.+.|+.+.. +...+... +.+|.+...|...+++|++++..||+++ .+-.||+|+
T Consensus 746 ~~i~~l~~~~~G~~LVLFtS~~~L~~v~~~l~~~~~~~~~~ll~Qg~~~~sr~~ll~~F~~~~~svLlGt-~SFwEGVDl 824 (932)
T PRK08074 746 AYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVTGGSRARLMKKFQQFDKAILLGT-SSFWEGIDI 824 (932)
T ss_pred HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEC-CCCCCCCCC
T ss_conf 9999999872999999926599999999998643335795599878987509999999984798499965-664356227
Q ss_pred CC-CCCEEEEECCCC
Q ss_conf 01-785999908998
Q gi|255764515|r 379 QY-GGNILVFFSLWW 392 (458)
Q Consensus 379 ~~-a~~~iI~~~~~w 392 (458)
.. +.+.||..-+|+
T Consensus 825 pGd~L~~ViI~kLPF 839 (932)
T PRK08074 825 PGDELSCLVIVRLPF 839 (932)
T ss_pred CCCCEEEEEEEECCC
T ss_conf 998868999980899
No 97
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=99.40 E-value=2.1e-11 Score=87.32 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=63.4
Q ss_pred CCCCEEEEHHHHHHHHHHHHHCCCC----------------CCCHHHHHHHHHHH----CCC------CCCEEEEEHHHC
Q ss_conf 4884034222367888664100026----------------53344589987642----458------855899844221
Q gi|255764515|r 319 ANAAPIIVAYHFNSDLARLQKAFPQ----------------GRTLDKDPCTIQEW----NEG------KIPLLFAHPASC 372 (458)
Q Consensus 319 ~~~~kviif~~~~~~~~~i~~~~~~----------------g~~~~~r~~~i~~f----~~~------~~~vli~s~~~~ 372 (458)
+.|..|+|||+-...+..+...+.+ +.+..++.+++.+| +.+ .-.++|+.|.++
T Consensus 309 s~g~~~~Vf~~~~~~v~~v~a~L~k~~~~~~~ltG~vr~~~~d~lar~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~ 388 (975)
T TIGR02621 309 SSGEAILVFCNTVDEVKKVVAKLPKEARRLEDLTGTVRGLERDMLARRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTG 388 (975)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCE
T ss_conf 27866999876843068988645774540776288104334785200131453148764567736689987799973242
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCC--EEEEEE
Q ss_conf 116220017859999089989868644566662022020378775--289999
Q gi|255764515|r 373 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA--VFVYYL 423 (458)
Q Consensus 373 ~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~--v~v~~l 423 (458)
.+|.||. +. +++ .|. =....+.||.||++ |.|.... +.|.|.
T Consensus 389 EVGadld-fd-hLv-t~~-~~~~sl~QRfGRvn-----R~G~r~~~~~~iVh~ 432 (975)
T TIGR02621 389 EVGADLD-FD-HLV-TDL-APFESLVQRFGRVN-----RFGERLDGSIAIVHS 432 (975)
T ss_pred EECCCCC-CC-HHH-HCC-CHHHHHHHHHHHHC-----CCCCCCCCEEEEEEC
T ss_conf 5503443-11-122-114-42457865430020-----002231650589856
No 98
>KOG0334 consensus
Probab=99.36 E-value=4.6e-10 Score=79.19 Aligned_cols=309 Identities=16% Similarity=0.190 Sum_probs=165.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-----CCCC-EEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 874789999999996798099958899868999-9999999975-----9994-99991604656999999998558888
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-----GEKS-VLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-----~~~~-~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
+.+|-|.+|+=.+...+-++-...+|+|||+-- +-.+.+...+ |.+| .||+||+.-+..|-.+++.+|....+
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCCCHHHHHCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98755664301222577458773268862034421155542047971107886479973777899999999999877417
Q ss_pred CEEEEE-ECCHHHH-HHHHCCCCCEEEECCCCHHHH-H---HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 159998-5897898-887307798699806420233-4---420001132204404531002465431156777766543
Q gi|255764515|r 75 MNISVI-TGTVKQR-TKVLKTPAVLYVINFENLGWL-V---QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 75 ~~~~~~-~g~~~~r-~~~~~~~~~i~i~s~e~~~~~-~---~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
+.+... .|+.... ...+.....|+|++...+-.. . ..+.....-..+++|||-++-.. + .
T Consensus 467 ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdm-g------------f- 532 (997)
T KOG0334 467 IRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDM-G------------F- 532 (997)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHC-C------------C-
T ss_conf 6279842785188789998678965996450323366615776233101103554112354400-4------------5-
Q ss_pred HCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05980799658402310010134677517888775327788777369564033000024555545589999974245433
Q gi|255764515|r 149 WESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLS 228 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (458)
.+.... +.++ +.|....-.+-.+| .+....+...
T Consensus 533 --ePq~~~-----Ii~n----------lrpdrQtvlfSatf----------------------pr~m~~la~~------- 566 (997)
T KOG0334 533 --EPQITR-----ILQN----------LRPDRQTVLFSATF----------------------PRSMEALARK------- 566 (997)
T ss_pred --CCCCEE-----HHHH----------CCHHHHHHHHHHHH----------------------HHHHHHHHHH-------
T ss_conf --754040-----9764----------66035434566220----------------------6999999988-------
Q ss_pred HHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 20000100100110003452453689988899999985103345202234788887542035410002234300013433
Q gi|255764515|r 229 LDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEK 308 (458)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k 308 (458)
....|.. +.|. ++.. ..+++. ..-......+.|
T Consensus 567 -----vl~~Pve----iiv~--------~~sv--------V~k~V~----------------------q~v~V~~~e~eK 599 (997)
T KOG0334 567 -----VLKKPVE----IIVG--------GRSV--------VCKEVT----------------------QVVRVCAIENEK 599 (997)
T ss_pred -----HHCCCEE----EEEC--------CCEE--------EECCEE----------------------EEEEEECCCHHH
T ss_conf -----6158808----9974--------6305--------742404----------------------899981483677
Q ss_pred CCCHHHHHH-CCCCCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCC
Q ss_conf 332566541-2488403422236788866410----------00265334458998764245885589984422111622
Q gi|255764515|r 309 IKALEVIIE-KANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 377 (458)
Q Consensus 309 ~~~l~~il~-~~~~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~Gln 377 (458)
+..|.+++. ..+..+.|||+.-....+.+.. .+++|.+...|...++.|+++.+.+|+++ ..++-||+
T Consensus 600 f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT-svvarGLd 678 (997)
T KOG0334 600 FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT-SVVARGLD 678 (997)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEH-HHHHCCCC
T ss_conf 99999999988624887999847147889999998568605430578756778858999745674289851-45426766
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEEC
Q ss_conf 0017859999089989868644566662022020378775289999858
Q gi|255764515|r 378 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 426 (458)
Q Consensus 378 L~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~ 426 (458)
... -.++|+||.|-...++--+.||- .|+.|-| ..|-|+.+
T Consensus 679 v~~-l~Lvvnyd~pnh~edyvhR~gRT--gragrkg-----~AvtFi~p 719 (997)
T KOG0334 679 VKE-LILVVNYDFPNHYEDYVHRVGRT--GRAGRKG-----AAVTFITP 719 (997)
T ss_pred CCC-EEEEEECCCCHHHHHHHHHHCCC--CCCCCCC-----EEEEEECH
T ss_conf 654-05899736631279999985135--6677763-----37998577
No 99
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=99.34 E-value=2.7e-10 Score=80.60 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=92.9
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE----EEEEC
Q ss_conf 99999999967980999588998689999999999975999499991604656999999998558888159----99858
Q gi|255764515|r 7 QTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI----SVITG 82 (458)
Q Consensus 7 Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~----~~~~g 82 (458)
|.-=...++.+..+.+..|||.|||.--++++.++..+..++++||.|++++..|=.+-|..+....++.. ..+++
T Consensus 89 Qk~WAKRv~~~~SFai~APTGVGKttFG~~mslflA~kKGkR~y~ilPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS 168 (1843)
T TIGR01054 89 QKSWAKRVLKGDSFAIVAPTGVGKTTFGLVMSLFLAKKKGKRSYIILPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHS 168 (1843)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
T ss_conf 79999996417964898058876779999999998654298789994707889999999875200257500002221011
Q ss_pred --CHHHH----HHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf --97898----887307798699806420233442000113220440453100
Q gi|255764515|r 83 --TVKQR----TKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKL 129 (458)
Q Consensus 83 --~~~~r----~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~l 129 (458)
+.+.+ +.+.+++++|+|+|-.-+....+.+.+.++|++|+||-.=.+
T Consensus 169 ~L~~~~kke~~Eri~~GDfdilitT~~FL~K~~~~L~~~y~F~liFVDDVDa~ 221 (1843)
T TIGR01054 169 KLSTKEKKEVKERIENGDFDILITTSMFLSKNFDKLKNQYKFDLIFVDDVDAL 221 (1843)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCEEEEEEEECHHHH
T ss_conf 26545678899987318917861224688876651789851448997153676
No 100
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.34 E-value=7e-11 Score=84.16 Aligned_cols=114 Identities=11% Similarity=0.248 Sum_probs=62.4
Q ss_pred CCCHHHH-HHCC-CCCEEEEHHHHHHHHHHHHHCCC-----------------CCCCHHHH--HHHHHHHCC----CCCC
Q ss_conf 3325665-4124-88403422236788866410002-----------------65334458--998764245----8855
Q gi|255764515|r 309 IKALEVI-IEKA-NAAPIIVAYHFNSDLARLQKAFP-----------------QGRTLDKD--PCTIQEWNE----GKIP 363 (458)
Q Consensus 309 ~~~l~~i-l~~~-~~~kviif~~~~~~~~~i~~~~~-----------------~g~~~~~r--~~~i~~f~~----~~~~ 363 (458)
+..+.++ ++.. .+.+++|++|.+.....++..+. ...-.++. ...+.+|.+ ...+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~~S~~~~~~~ 334 (424)
T TIGR01587 255 ISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELKKSAWKDNEK 334 (424)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 34666677874157786699985438999999998512652002124404477003667767999999851013544577
Q ss_pred EEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCC--CCCCEEEEEEEECC
Q ss_conf 89984422111622001785999908998986864456666202202037--87752899998589
Q gi|255764515|r 364 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQN 427 (458)
Q Consensus 364 vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~G--q~~~v~v~~li~~~ 427 (458)
.++++|+++..|||+. + +++| -| .=-+..+.||.||+.|+. .++| ...+|+|+.-..++
T Consensus 335 ~v~V~TQv~E~SlD~s-~-D~~i-Te-~aP~d~LiQR~GR~~R~~-~~~~d~~~~~~y~~~~~~~~ 395 (424)
T TIGR01587 335 FVIVATQVIEVSLDIS-V-DVMI-TE-LAPIDSLIQRLGRLNRYG-RKIGDIENREVYILTILLED 395 (424)
T ss_pred EEEEEEEEEEEEEECC-C-CHHH-HH-CCCHHHHHHHHHHHCCCC-CCCCCCCCCCEEEEEECCCC
T ss_conf 0699878788864204-4-4134-31-150123355421110113-56578898720378525788
No 101
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.33 E-value=3.5e-09 Score=73.85 Aligned_cols=152 Identities=22% Similarity=0.211 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHC----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCE
Q ss_conf 8747899999999967----98099958899868999999999997599949999160-465699999999855888815
Q gi|255764515|r 2 NLAPHQTKIVDWILDH----KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~----~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
.|.+-|..|++.+... ..+||...+|+|||=.=+-+++.....| +.+||++|- ++..+.|.+=-.+|. .+
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg----~~ 272 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG----AK 272 (730)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHHHHHC----CC
T ss_conf 038899999999997505666536767778858999999999999759-8799995653456999999999867----87
Q ss_pred EEEEEC--CHHHHHHHHC----CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHH
Q ss_conf 999858--9789888730----779869980642023344200011322044045310--02465431156777766543
Q gi|255764515|r 77 ISVITG--TVKQRTKVLK----TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 77 ~~~~~g--~~~~r~~~~~----~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~ 148 (458)
+.+++. ++.+|...|. +...++|-+..++- ....+-.+||+||=|- +|-.....+..+--++.+..
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHC------CCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 453146579278999999985597159997122330------72312576997024564324777777678999999988
Q ss_pred HCCCEEEEECCCCHHH
Q ss_conf 0598079965840231
Q gi|255764515|r 149 WESERFIELTGTPSPN 164 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n 164 (458)
....-+++-||||.-.
T Consensus 347 ~~~~pvvLgSATPSLE 362 (730)
T COG1198 347 KENAPVVLGSATPSLE 362 (730)
T ss_pred HCCCCEEEECCCCCHH
T ss_conf 6099889826887789
No 102
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=99.33 E-value=1.6e-10 Score=81.95 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=80.6
Q ss_pred CCHHHHHHC-CCCCEEEEHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 325665412-48840342223678886641000----------2653344589987642458855899844221116220
Q gi|255764515|r 310 KALEVIIEK-ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 310 ~~l~~il~~-~~~~kviif~~~~~~~~~i~~~~----------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
|.+.+|-.. ..+++++|=+=.+.|..-|..-| |.+--.=+|.++|..-+.|+++|||+ +.-.-|||||
T Consensus 435 DL~~EI~~R~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVG-INLLREGLDl 513 (667)
T TIGR00631 435 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVG-INLLREGLDL 513 (667)
T ss_pred HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEE-CCHHHCCCCC
T ss_conf 889999999972894899820167788999997058837987145578999999999844788408860-0020024651
Q ss_pred CCCCCEEEEEC-----CCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEE-EEEECCCHHHHHHHHHHHH
Q ss_conf 01785999908-----99898686445666620220203787752899-9985899689999999999
Q gi|255764515|r 379 QYGGNILVFFS-----LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY-YLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 379 ~~a~~~iI~~~-----~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~-~li~~~tide~i~~~~~~K 440 (458)
..=+=|.| +| ..-|...+.|-|||.+| +=-| .|..| .=|| +|+++.|-++-++.
T Consensus 514 PEVSLVAI-LDADKEGFLRSerSLIQTIGRAAR---N~~G---~VilYAD~iT-~sM~~AI~ET~RRR 573 (667)
T TIGR00631 514 PEVSLVAI-LDADKEGFLRSERSLIQTIGRAAR---NVNG---KVILYADKIT-DSMQKAIEETERRR 573 (667)
T ss_pred HHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHH---CCCC---EEEEECCCCC-HHHHHHHHHHHHHH
T ss_conf 14889976-327888998663027889888752---5796---5999728700-78999999878889
No 103
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.31 E-value=9.4e-10 Score=77.34 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=64.1
Q ss_pred CCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEE
Q ss_conf 4884034222367888664100----------026533445899876424588558998442211162200178599990
Q gi|255764515|r 319 ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 388 (458)
Q Consensus 319 ~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~ 388 (458)
..+++++|-+-.+.+...+..- ++.....-+|.+++...+.|+.+||++ +....|||+|... +.|..+
T Consensus 444 ~~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVG-INLLREGLDlPEV-SLVaIL 521 (657)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG-INLLREGLDIPEV-SLVAIL 521 (657)
T ss_pred HCCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEE-ECHHHCCCCCCCE-EEEEEE
T ss_conf 36976999954598999999999967980799626661889999999985888758975-0022045787613-579887
Q ss_pred CC-----CCCHHHHHHHHHHHHC
Q ss_conf 89-----9898686445666620
Q gi|255764515|r 389 SL-----WWDLEEHQQMIERIGV 406 (458)
Q Consensus 389 ~~-----~wn~~~~~Q~~gRi~~ 406 (458)
|- --|...+.|.+||..|
T Consensus 522 DADKeGFLRs~~SLiQtiGRAAR 544 (657)
T PRK05298 522 DADKEGFLRSERSLIQTIGRAAR 544 (657)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 06852210352059999878862
No 104
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=99.25 E-value=1e-11 Score=89.23 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCC
Q ss_conf 00265334458998764245885589984422111622001785999908998986864456666202202037
Q gi|255764515|r 340 AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 413 (458)
Q Consensus 340 ~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~G 413 (458)
.++++.+.++|...++.|++++.++++++ .++++|+|++. ++++|++++|||+..+.|+.||+ +|.|
T Consensus 12 ~i~g~~~~~~R~~~~~~f~~~~~~ilv~t-~~~~~Gid~~~-~~~vi~~~~~~s~~~~~Q~~GR~-----~R~g 78 (78)
T pfam00271 12 RLHGGLSQEEREEILEDFRNGKSKVLVAT-DVAGRGIDLPD-VNVVINYDLPWNPASYIQRIGRA-----GRAG 78 (78)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCC
T ss_conf 98697999999999999987997399992-56525677878-99999978996989999997268-----7799
No 105
>KOG0949 consensus
Probab=99.25 E-value=1.5e-08 Score=70.02 Aligned_cols=154 Identities=17% Similarity=0.112 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCHHHHHHHHHHH-HHH-CCCCCCEEEEEEC
Q ss_conf 8999999999679809995889986899999999-999759994999916046569999999-985-5888815999858
Q gi|255764515|r 6 HQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS-YIHLWGEKSVLVIAPLRVAQSVWTSEV-QRW-SNFSHMNISVITG 82 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~~~LIv~P~~l~~~~W~~Ei-~kf-~~~~~~~~~~~~g 82 (458)
||.+-.+-.=.+...+|..++-+|||+..-.+++ .|.....+-++.|+|+-.+.||-..++ .+| ++.....+.. -|
T Consensus 515 WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl-~g 593 (1330)
T KOG0949 515 WQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSL-LG 593 (1330)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCEECCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHH-HH
T ss_conf 88877665505662599820467861005899999985427987999664587766666778876336765631346-76
Q ss_pred C--HHHHHHHHCCCCCEEEECCCCHHHHHHH----CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9--7898887307798699806420233442----000113220440453100246543115677776654305980799
Q gi|255764515|r 83 T--VKQRTKVLKTPAVLYVINFENLGWLVQE----LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 83 ~--~~~r~~~~~~~~~i~i~s~e~~~~~~~~----~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~ 156 (458)
+ ...+.+-| ..+|.|+-.+-+....-. ...--....+|+||.|.+.|... +..-..+..+. . .-.++
T Consensus 594 ~ltqEYsinp~--nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed---~l~~Eqll~li-~-CP~L~ 666 (1330)
T KOG0949 594 DLTQEYSINPW--NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEED---GLLWEQLLLLI-P-CPFLV 666 (1330)
T ss_pred HHHHHHCCCCH--HCEEEEECHHHHHHHHCCCHHHHHHHHCCEEEEECHHHHCCCCCC---CHHHHHHHHHC-C-CCEEE
T ss_conf 66677357841--135999746789988638566530224005897112332465243---41899877745-7-87068
Q ss_pred ECCCCHHHHCCCH
Q ss_conf 6584023100101
Q gi|255764515|r 157 LTGTPSPNGLIDL 169 (458)
Q Consensus 157 LTgTPi~n~~~el 169 (458)
||||- ++|..+
T Consensus 667 LSATi--gN~~l~ 677 (1330)
T KOG0949 667 LSATI--GNPNLF 677 (1330)
T ss_pred EECCC--CCHHHH
T ss_conf 74133--888899
No 106
>PRK09401 reverse gyrase; Reviewed
Probab=99.24 E-value=7.6e-09 Score=71.83 Aligned_cols=129 Identities=20% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCC--CCEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160465699999999855888--815999
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFS--HMNISV 79 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~--~~~~~~ 79 (458)
++...|..=+..++.+..+.+.+++|+|||--.+.++.++..+ .+++++|.|+.++..|=.+-+..|.... ..++..
T Consensus 78 ~~w~~Qr~WakR~~~g~SFaiiAPTG~GKTtfgl~~sly~a~k-gkks~~i~PT~~Lv~Q~~~kl~~~~~~~~~~~~~~~ 156 (1176)
T PRK09401 78 EPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMALYLAKK-GKKSYIIFPTRLLVEQVVEKLRKLAEKVGVKVRLLY 156 (1176)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9848899999998668974898889988889999999999865-983999968889999999999999997099840899
Q ss_pred EECC--HHHHHH----HHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC-CCCC
Q ss_conf 8589--789888----730779869980642023344200011322044045310-0246
Q gi|255764515|r 80 ITGT--VKQRTK----VLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK-LKSF 132 (458)
Q Consensus 80 ~~g~--~~~r~~----~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~-lkn~ 132 (458)
++|. .+++.+ +-.++++|+|+|-.-+....+.+ ....|++|.+|-.-. +|+.
T Consensus 157 y~~~~~~~~kee~~~~~~~gdfdIlitT~~fl~kn~~~l-~~~~f~fifvDDVDs~LKss 215 (1176)
T PRK09401 157 YHSSLKKKEKEEFLERLEEGDFDILVTTSQFLSKNFDEL-PKDRFDFVFVDDVDAVLKSS 215 (1176)
T ss_pred EECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHC-CCCCCCEEEEECHHHHHHHH
T ss_conf 856776667899998865599868998567676548760-35688889993418777523
No 107
>KOG0332 consensus
Probab=99.22 E-value=1e-09 Score=77.16 Aligned_cols=308 Identities=19% Similarity=0.214 Sum_probs=155.1
Q ss_pred CCCCHHHHHHHHHH----------------HHC-CCEEEEE-CCCCCHHHH-HHHHHHHHHHC-CCCCEEEEECCHHHHH
Q ss_conf 98747899999999----------------967-9809995-889986899-99999999975-9994999916046569
Q gi|255764515|r 1 MNLAPHQTKIVDWI----------------LDH-KRCAIWA-SMGSGKTVS-VLTALSYIHLW-GEKSVLVIAPLRVAQS 60 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~----------------~~~-~~~ll~~-~~G~GKT~~-al~~~~~l~~~-~~~~~LIv~P~~l~~~ 60 (458)
|.|.|.=+.|+..| +.+ ++-++|- .-|+|||.. +++.+...... .....+.++|..-+..
T Consensus 95 L~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsRvd~~~~~PQ~iCLaPtrELA~ 174 (477)
T KOG0332 95 LRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAP 174 (477)
T ss_pred HCCCHHHHHHHHHHCCCCCCHHHHHHCCHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHH
T ss_conf 17798998578875268832577752125305982656655017886058999999873483335877405476177799
Q ss_pred HHHHHHHHHCCCCCCEEE-EEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC--CCCCCCEEECCCCCCCCCCCCCCH
Q ss_conf 999999985588881599-98589789888730779869980642023344200--011322044045310024654311
Q gi|255764515|r 61 VWTSEVQRWSNFSHMNIS-VITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK--GTWPFATIVVDESTKLKSFRLRQG 137 (458)
Q Consensus 61 ~W~~Ei~kf~~~~~~~~~-~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~--~~~~~~~iIiDEaH~lkn~~~~~~ 137 (458)
|-.+-+++-..+-.+... .+.|+...|..- -..+|++-+...+..+...+. ........++|||-.+-+..+-+.
T Consensus 175 Q~~eVv~eMGKf~~ita~yair~sk~~rG~~--l~eqIviGTPGtv~Dl~~klk~id~~kikvfVlDEAD~Mi~tqG~~D 252 (477)
T KOG0332 175 QTGEVVEEMGKFTELTASYAIRGSKAKRGNK--LTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQD 252 (477)
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCCCC--CHHHEEECCCCCHHHHHHHHHHHCHHHCEEEEECCHHHHHHCCCCCC
T ss_conf 8989999846701146899853764446773--32221317994289999998742766643888532255543136655
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 56777766543059807996584023100101346775178887753277887773695640330000245555455899
Q gi|255764515|r 138 SKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217 (458)
Q Consensus 138 s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (458)
+..+. ..........++-|||=.. ....|..+.....
T Consensus 253 -~S~rI-~~~lP~~~QllLFSATf~e---------------------~V~~Fa~kivpn~-------------------- 289 (477)
T KOG0332 253 -QSIRI-MRSLPRNQQLLLFSATFVE---------------------KVAAFALKIVPNA-------------------- 289 (477)
T ss_pred -CCHHH-HHHCCCCCEEEEEECHHHH---------------------HHHHHHHHHCCCC--------------------
T ss_conf -43104-4316876237764010377---------------------9999999854898--------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99974245433200001001001100034524536899888999999851033452022347888875420354100022
Q gi|255764515|r 218 IEAQLSDCCLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDE 297 (458)
Q Consensus 218 l~~~l~~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~ 297 (458)
..-..+.++..++...... +. |.
T Consensus 290 --------n~i~Lk~eel~L~~IkQly--v~----------------------------------------C~------- 312 (477)
T KOG0332 290 --------NVIILKREELALDNIKQLY--VL----------------------------------------CA------- 312 (477)
T ss_pred --------CEEEEEHHHCCCCCHHHHE--EE----------------------------------------CC-------
T ss_conf --------4036563430642134313--66----------------------------------------55-------
Q ss_pred CCCCHHCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHC----------CCCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 3430001343333256654124884034222367888664100----------026533445899876424588558998
Q gi|255764515|r 298 EKHWKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFA 367 (458)
Q Consensus 298 ~~~~~~~~~~k~~~l~~il~~~~~~kviif~~~~~~~~~i~~~----------~~~g~~~~~r~~~i~~f~~~~~~vli~ 367 (458)
....|++++.++..-..=..-||||+.+.....+... +++..+..+|..++++|++|+.+|||.
T Consensus 313 ------~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332 313 ------CRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf ------51667999999870111100589996202699999999843753678506530678899999986576069987
Q ss_pred EHHHCCCCCCCCCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEE
Q ss_conf 4422111622001785999908998------986864456666202202037877528999985
Q gi|255764515|r 368 HPASCGHGLNLQYGGNILVFFSLWW------DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 425 (458)
Q Consensus 368 s~~~~~~GlnL~~a~~~iI~~~~~w------n~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~ 425 (458)
+ .+++-||+.++ .+++|+||+|- .+..+.-|+||- .|.|-+ .+ .+.|+-
T Consensus 387 T-nV~ARGiDv~q-Vs~VvNydlP~~~~~~pD~etYlHRiGRt-----GRFGkk-G~-a~n~v~ 441 (477)
T KOG0332 387 T-NVCARGIDVAQ-VSVVVNYDLPVKYTGEPDYETYLHRIGRT-----GRFGKK-GL-AINLVD 441 (477)
T ss_pred E-CHHHCCCCCCE-EEEEEECCCCCCCCCCCCHHHHHHHHCCC-----CCCCCC-CE-EEEEEC
T ss_conf 0-11123565313-79999447764557898778898870234-----656655-24-898641
No 108
>KOG0327 consensus
Probab=99.22 E-value=9.1e-10 Score=77.42 Aligned_cols=311 Identities=16% Similarity=0.168 Sum_probs=165.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE-ECC
Q ss_conf 999999999679809995889986899999999999--75999499991604656999999998558888159998-589
Q gi|255764515|r 7 QTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIH--LWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI-TGT 83 (458)
Q Consensus 7 Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~--~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~-~g~ 83 (458)
|..|+--+........-.+.|+|||.+-...+.... .....-+||++|...+..|=..-...+...-...++.. .|.
T Consensus 53 QqrAI~p~i~G~dv~~qaqsgTgKt~af~i~ilq~iD~~~ke~qalilaPtreLa~q~~~v~~~lg~~~~~~v~~~igg~ 132 (397)
T KOG0327 53 QQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGT 132 (397)
T ss_pred HHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 76343553468744676302544114667888751374167777988613278889899998864112461466531764
Q ss_pred HHHHHH--HHCCCCCEEEECCCCHHHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 789888--73077986998064202334-420001132204404531002465431156777766543059807996584
Q gi|255764515|r 84 VKQRTK--VLKTPAVLYVINFENLGWLV-QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 84 ~~~r~~--~~~~~~~i~i~s~e~~~~~~-~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
...+.. +......+++-+...+.... ...+...+-.+.++|||-.+...+.. .+- ..+.......-..+++|||
T Consensus 133 ~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfk--dqI-~~if~~lp~~vQv~l~SAT 209 (397)
T KOG0327 133 NVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFK--DQI-YDIFQELPSDVQVVLLSAT 209 (397)
T ss_pred CCHHHHHHHHCCCCEEECCCCHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCHH--HHH-HHHHHHCCCCHHHEEECCC
T ss_conf 1003455552047635437850577764136456665467752436766305648--999-9999875943220100136
Q ss_pred CHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 02310010134677517888775327788777369564033000024555545589999974245433200001001001
Q gi|255764515|r 161 PSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240 (458)
Q Consensus 161 Pi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~ 240 (458)
- |.|+ +.. ..+|... +..+.+++.
T Consensus 210 ~----p~~v---l~v--------------t~~f~~~---------------------------pv~i~vkk~-------- 233 (397)
T KOG0327 210 M----PSDV---LEV--------------TKKFMRE---------------------------PVRILVKKD-------- 233 (397)
T ss_pred C----CHHH---HHH--------------HHHHCCC---------------------------CEEEEECCH--------
T ss_conf 8----5889---999--------------8874047---------------------------568995200--------
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHCCC
Q ss_conf 10003452453689988899999985103345202234788887542035410002234300013433332566541248
Q gi|255764515|r 241 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALEVIIEKAN 320 (458)
Q Consensus 241 ~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~k~~~l~~il~~~~ 320 (458)
+++ . +. ..|+ +. .....+|++.+.++.+ +
T Consensus 234 -------~lt-------l----~g--------------------ikq~---~i--------~v~k~~k~~~l~dl~~--~ 262 (397)
T KOG0327 234 -------ELT-------L----EG--------------------IKQF---YI--------NVEKEEKLDTLCDLYR--R 262 (397)
T ss_pred -------HHH-------H----HH--------------------EEEE---EE--------ECCCCCCCCHHHHHHH--H
T ss_conf -------201-------2----22--------------------0022---20--------1054311227999998--6
Q ss_pred CCEEEEHHHHHHHHHHHHH----------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 8403422236788866410----------002653344589987642458855899844221116220017859999089
Q gi|255764515|r 321 AAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 390 (458)
Q Consensus 321 ~~kviif~~~~~~~~~i~~----------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~ 390 (458)
-...++|||....+..+.. ++++....++|.....+|+.|..+|||.| ...+-|+++|. +..+|.|++
T Consensus 263 ~~q~~if~nt~r~v~~l~~~L~~~~~~~s~i~~d~~q~~R~~~~~~f~~g~srvlItt-dl~argidv~~-~slvinydl 340 (397)
T KOG0327 263 VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITT-DLLARGIDVQQ-VSLVVNYDL 340 (397)
T ss_pred HHCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCHHH-CCEEEEECC
T ss_conf 4310578510456777899986277337876346430034689998645872377412-21246541110-122565016
Q ss_pred CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 989868644566662022020378775289999858996899999999
Q gi|255764515|r 391 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 438 (458)
Q Consensus 391 ~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~ 438 (458)
|-+...+.-++||.- |.|- +-....++++. |++.++..+
T Consensus 341 P~r~~~yihR~gr~g-----r~gr--kg~~in~v~~~--d~~~lk~ie 379 (397)
T KOG0327 341 PARKENYIHRIGRAG-----RFGR--KGVAINFVTEE--DVRDLKDIE 379 (397)
T ss_pred CCCHHHHHHHCCCCC-----CCCC--CCEEEEEEHHH--HHHHHHHHH
T ss_conf 520666665255456-----5677--71355520175--688887389
No 109
>KOG0948 consensus
Probab=99.21 E-value=8.7e-10 Score=77.54 Aligned_cols=146 Identities=21% Similarity=0.286 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH-HCCCCCCEEEEE
Q ss_conf 8747899999999967980999588998689999999999975999499991604656999999998-558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQR-WSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~k-f~~~~~~~~~~~ 80 (458)
+|-|+|..|+.-+-++...|+-+-+-.|||+.|-.+++.- ...+.+++.-.|-..+.||=++|+.. |. +|...
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGLM 202 (1041)
T KOG0948 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFK-----DVGLM 202 (1041)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHH-HHHCCEEEEECHHHHHCCHHHHHHHHHHC-----CCCEE
T ss_conf 3480676545311279638998405788523799999999-87648589607315541154899998846-----36523
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHH---HCCCCCCCCEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEE
Q ss_conf 589789888730779869980642023344---2000113220440453100246543-115677776654305980799
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQ---ELKGTWPFATIVVDESTKLKSFRLR-QGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~---~~~~~~~~~~iIiDEaH~lkn~~~~-~~s~~~~~l~~~~~~~~~~l~ 156 (458)
+|+-. ++.+..-+|+|-|-++...- +......| ||+||.|.+|..... -+. ..+. +.+..-+.++
T Consensus 203 TGDVT-----InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWE---ETII-llP~~vr~VF 271 (1041)
T KOG0948 203 TGDVT-----INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWE---ETII-LLPDNVRFVF 271 (1041)
T ss_pred ECCEE-----ECCCCCEEEEHHHHHHHHHHCCCHHHHEEEE--EEEEEEHHCCCCCCCEEEE---EEEE-ECCCCCEEEE
T ss_conf 05446-----6898754533799999987433167552314--8862001001344560235---6678-5366603899
Q ss_pred ECCCCHHHH
Q ss_conf 658402310
Q gi|255764515|r 157 LTGTPSPNG 165 (458)
Q Consensus 157 LTgTPi~n~ 165 (458)
|||| ++|.
T Consensus 272 LSAT-iPNA 279 (1041)
T KOG0948 272 LSAT-IPNA 279 (1041)
T ss_pred EECC-CCCH
T ss_conf 9565-8777
No 110
>KOG0352 consensus
Probab=99.20 E-value=5.5e-09 Score=72.68 Aligned_cols=309 Identities=18% Similarity=0.207 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEEE-
Q ss_conf 7899999999967-98099958899868999999999997599949999160-46569999999985588881599985-
Q gi|255764515|r 5 PHQTKIVDWILDH-KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVIT- 81 (458)
Q Consensus 5 p~Q~~~v~~~~~~-~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~~- 81 (458)
|-|+.|+.-+... .-..+.+++|+||++.- -+-.|...| -++||.|- .++.+| .+.+.+ ++|.+-+
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCy--QLPaL~~~g--ITIV~SPLiALIkDQ-iDHL~~------LKVp~~SL 91 (641)
T KOG0352 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCY--QLPALVHGG--ITIVISPLIALIKDQ-IDHLKR------LKVPCESL 91 (641)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHH--HCHHHHHCC--EEEEECHHHHHHHHH-HHHHHH------HCCCHHHH
T ss_conf 5789989998834673799646887601454--265877288--189930789999999-877874------05616664
Q ss_pred ---CCHHHHHHHHC------CCCCEEEECCCCHH-----HHHHHCCCCCCCCEEECCCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf ---89789888730------77986998064202-----3344200011322044045310024654--31156777766
Q gi|255764515|r 82 ---GTVKQRTKVLK------TPAVLYVINFENLG-----WLVQELKGTWPFATIVVDESTKLKSFRL--RQGSKTARALA 145 (458)
Q Consensus 82 ---g~~~~r~~~~~------~~~~i~i~s~e~~~-----~~~~~~~~~~~~~~iIiDEaH~lkn~~~--~~~s~~~~~l~ 145 (458)
-+.++|..++- ....++-||.|... .+.+.+-.......+++||||-+.-++- .....+...++
T Consensus 92 NSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR 171 (641)
T KOG0352 92 NSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR 171 (641)
T ss_pred HCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 01210788999988887437751489976315556668999998874140224773346667762666682044466677
Q ss_pred HHHHCCCEEEEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54305980799658402310010134677517888775327788777369564033000024555545589999974245
Q gi|255764515|r 146 KPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDC 225 (458)
Q Consensus 146 ~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (458)
...... -.++||||.-..--.|+|.+|.+-.|--.+.. -.|+.+-+-..
T Consensus 172 S~~~~v-pwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~---------------------------- 220 (641)
T KOG0352 172 SVCPGV-PWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDN---------------------------- 220 (641)
T ss_pred HHCCCC-CEEEEECCCCHHHHHHHHHHHHCCCCHHHHCC--CCHHHHHHHHH----------------------------
T ss_conf 446999-66985434677677999999760585444057--41454445788----------------------------
Q ss_pred HHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCC
Q ss_conf 43320000100100110003452453689988899999985103345202234788887542035410002234300013
Q gi|255764515|r 226 CLSLDIADYQNIDKPILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVH 305 (458)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~~~~~~~~ 305 (458)
.+...+.|. |..+..-....+ +. |.
T Consensus 221 ~~K~~I~D~----------------------~~~LaDF~~~~L-G~--------------------~~------------ 245 (641)
T KOG0352 221 HMKSFITDC----------------------LTVLADFSSSNL-GK--------------------HE------------ 245 (641)
T ss_pred HHHHHHCCH----------------------HHHHHHHHHHHC-CC--------------------CH------------
T ss_conf 888764137----------------------778999999862-89--------------------04------------
Q ss_pred CCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHH----------HHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCC
Q ss_conf 43333256654124884034222367888664----------10002653344589987642458855899844221116
Q gi|255764515|r 306 DEKIKALEVIIEKANAAPIIVAYHFNSDLARL----------QKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 375 (458)
Q Consensus 306 ~~k~~~l~~il~~~~~~kviif~~~~~~~~~i----------~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~G 375 (458)
...+- ++.-...-||||......+.+ ..+++.|-...+|.++-+.+-+++.+|+.++ .+-|.|
T Consensus 246 -----~~~~~-~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT-~SFGMG 318 (641)
T KOG0352 246 -----KASQN-KKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT-VSFGMG 318 (641)
T ss_pred -----HHHCC-CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEE-ECCCCC
T ss_conf -----44117-87777732799602889998988753247626776500141126889999862788779996-024446
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEE
Q ss_conf 220017859999089989868644566662022020378775289999
Q gi|255764515|r 376 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 423 (458)
Q Consensus 376 lnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~l 423 (458)
++=. ....|||.+++-|.+-+.|--||. .|.|-..-|+.||-
T Consensus 319 VDKp-~VRFViHW~~~qn~AgYYQESGRA-----GRDGk~SyCRLYYs 360 (641)
T KOG0352 319 VDKP-DVRFVIHWSPSQNLAGYYQESGRA-----GRDGKRSYCRLYYS 360 (641)
T ss_pred CCCC-CEEEEEECCHHHHHHHHHHHCCCC-----CCCCCCCCEEEEEC
T ss_conf 6877-615999517056578998861535-----66777252013332
No 111
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.19 E-value=1.6e-08 Score=69.84 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=53.8
Q ss_pred CCCCCEEEEHHHHHHH---HHHHHHC----CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC-CCCEEEEEC
Q ss_conf 2488403422236788---8664100----0265334458998764245885589984422111622001-785999908
Q gi|255764515|r 318 KANAAPIIVAYHFNSD---LARLQKA----FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY-GGNILVFFS 389 (458)
Q Consensus 318 ~~~~~kviif~~~~~~---~~~i~~~----~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~-a~~~iI~~~ 389 (458)
..+|+-.+.|+++..+ .+.+... +.+|... .+...+++|++++..||+++ .+-.||+|+.. +...+|..-
T Consensus 645 ~~~g~~LVLFTS~~~l~~v~~~L~~~~~~~L~Qg~~g-s~~~l~~rF~~~~~siLlGt-~SFWEGVDlpG~~L~~vVI~k 722 (820)
T PRK07246 645 QEGQPILVLFNSKKHLLAVSDYLDQWQVSHLAQEKNG-TAYNIKKRFDRGEQTILLGL-GSFWEGVDFIQADRMIEVITR 722 (820)
T ss_pred HCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHCCCEEEEEC-CCCCCCCCCCCCCEEEEEEEE
T ss_conf 7499999995309999999999853799778867976-79999999984899699976-676466448998779999886
Q ss_pred CCCC----H--------------------------HHHHHHHHHHHC
Q ss_conf 9989----8--------------------------686445666620
Q gi|255764515|r 390 LWWD----L--------------------------EEHQQMIERIGV 406 (458)
Q Consensus 390 ~~wn----~--------------------------~~~~Q~~gRi~~ 406 (458)
+||- | -.+.|+.||.+|
T Consensus 723 LPF~~P~dPl~~a~~~~l~~~G~npF~~~~LP~AvlrlkQg~GRLIR 769 (820)
T PRK07246 723 LPFDNPEDPFVKKMSQYLLEEGKNPFYDYFLPMTILRLKQAIGRTMR 769 (820)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999980999999999998289952562299999999995703676
No 112
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.18 E-value=3.6e-11 Score=85.89 Aligned_cols=66 Identities=26% Similarity=0.452 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCC
Q ss_conf 0265334458998764245885589984422111622001785999908998986864456666202202037
Q gi|255764515|r 341 FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 413 (458)
Q Consensus 341 ~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~G 413 (458)
++++.+.++|...++.|++++.+||++ +.++++|+||+. ++++|++++|||+..+.|+.||+ +|.|
T Consensus 17 i~g~~~~~~R~~~~~~f~~~~~~ilv~-t~~~~~Gidl~~-~~~vI~~~~~~~~~~~~Q~~GR~-----~R~g 82 (82)
T smart00490 17 LHGGLSQEEREEILEKFNNGKIKVLVA-TDVAERGLDLPG-VDLVIIYDLPWSPASYIQRIGRA-----GRAG 82 (82)
T ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEE-EEEEEEECCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCC
T ss_conf 989699999999999998799719999-502421148988-99999978996989999997258-----7899
No 113
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.16 E-value=9.4e-08 Score=65.22 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHH---HHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 8747899999999---96798-09995889986899999999999759994999916046569999999
Q gi|255764515|r 2 NLAPHQTKIVDWI---LDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEV 66 (458)
Q Consensus 2 ~L~p~Q~~~v~~~---~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei 66 (458)
+.||+|.+....+ +.++. .++=.++|+|||+..|+.+.........+++|.+++..+..|-.+|.
T Consensus 15 ~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 15 EPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf 989899999999999981687189988998517599999999867752975999899576888987621
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=99.15 E-value=3.8e-08 Score=67.58 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=78.3
Q ss_pred HHHHHHCCCCCEEEEHHHHHH---HHHHHH--------HCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 566541248840342223678---886641--------000265334458998764245885589984422111622001
Q gi|255764515|r 312 LEVIIEKANAAPIIVAYHFNS---DLARLQ--------KAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 312 l~~il~~~~~~kviif~~~~~---~~~~i~--------~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
+.++.+-..++-++.|+.+.- +.+.+. ..+.++.+...+..++++|++|+-.||+++ .+-=||+||+.
T Consensus 757 I~e~~~~~~~~~LVLFTS~~mL~~V~~~l~~l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~-~SFWEGvDf~~ 835 (944)
T TIGR01407 757 IVELAALESPKILVLFTSKEMLKAVYDLLKELSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGA-SSFWEGVDFPG 835 (944)
T ss_pred HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECC-CCEECCCCCCC
T ss_conf 99997206896275164899999999985302002580667412677857899998614787566115-54002401179
Q ss_pred CCCE-EEEECCCCCH------------------------------HHHHHHHHHHHCCCCHHCCCCCC-EEEEE--EEEC
Q ss_conf 7859-9990899898------------------------------68644566662022020378775-28999--9858
Q gi|255764515|r 381 GGNI-LVFFSLWWDL------------------------------EEHQQMIERIGVTRQRQAGFKRA-VFVYY--LIAQ 426 (458)
Q Consensus 381 a~~~-iI~~~~~wn~------------------------------~~~~Q~~gRi~~~r~hR~Gq~~~-v~v~~--li~~ 426 (458)
...+ +|..=+|+.+ -++.|+.||++ |.-+.+. +.|.+ |+++
T Consensus 836 ~~~~~lvi~RLPF~nP~~pL~kk~~~~~~~EG~npF~~~~lP~A~~RlrQalGRli-----R~e~drg~~~~LD~Rl~~~ 910 (944)
T TIGR01407 836 NELVILVIPRLPFANPKEPLTKKKLQKLEEEGKNPFYDYALPMAILRLRQALGRLI-----RRENDRGSILVLDKRLVTK 910 (944)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHC-----CCCCCCEEEEEECCCCCCC
T ss_conf 97179998528677885389999998854311464111013079999877510002-----5523554689971101160
Q ss_pred C---CHHHHHHHHHHHHHHH--HHHHHHHHHC
Q ss_conf 9---9689999999999999--9999855413
Q gi|255764515|r 427 N---TIDELVLQRLRTKSTI--QDLLLNALKK 453 (458)
Q Consensus 427 ~---tide~i~~~~~~K~~~--~~~~~~~~~~ 453 (458)
. -+.+..-+...-|... ...++.++|+
T Consensus 911 ~Ygk~~~~~L~~~~~~K~~~qq~~~~~~~ik~ 942 (944)
T TIGR01407 911 RYGKRFLKSLPEVLSVKGLSQQLEELLEEIKE 942 (944)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47899998400015467603568999999972
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.15 E-value=1.3e-08 Score=70.35 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=75.9
Q ss_pred CHHHHHH-CCCCCEEEEHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCC
Q ss_conf 2566541-248840342223678886641000----------26533445899876424588558998442211162200
Q gi|255764515|r 311 ALEVIIE-KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 379 (458)
Q Consensus 311 ~l~~il~-~~~~~kviif~~~~~~~~~i~~~~----------~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~ 379 (458)
.+.+|-+ ...++.++|-+-.+.+..-+..-+ +.+--.-+|.+++..-+.|.++||++ +.-..|||+|.
T Consensus 435 L~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVG-INLLREGLDiP 513 (663)
T COG0556 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG-INLLREGLDLP 513 (663)
T ss_pred HHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE-EHHHHCCCCCC
T ss_conf 99999999964972999843688899999999866964786424403899999999975778748985-01331347886
Q ss_pred CCCCEEEEEC-----CCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 1785999908-----998986864456666202202037877528999985899689999999999
Q gi|255764515|r 380 YGGNILVFFS-----LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 440 (458)
Q Consensus 380 ~a~~~iI~~~-----~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K 440 (458)
.. +.|..+| .--|...+.|-+||.. |.-.- .|..|-=...+|+++.|-+..++.
T Consensus 514 EV-sLVAIlDADKeGFLRse~SLIQtIGRAA-----RN~~G-kvIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 514 EV-SLVAILDADKEGFLRSERSLIQTIGRAA-----RNVNG-KVILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred CE-EEEEEEECCCCCCCCCCCHHHHHHHHHH-----HCCCC-EEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 45-5798860685444345325999987886-----35797-399971011499999999888899
No 116
>KOG0346 consensus
Probab=99.11 E-value=6.5e-08 Score=66.20 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=85.4
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHC-----C--CCCEEEEECCHHHHHHHHHHHHHHCCCC--CCE
Q ss_conf 9999999996798099958899868999-9999999975-----9--9949999160465699999999855888--815
Q gi|255764515|r 7 QTKIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLW-----G--EKSVLVIAPLRVAQSVWTSEVQRWSNFS--HMN 76 (458)
Q Consensus 7 Q~~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~-----~--~~~~LIv~P~~l~~~~W~~Ei~kf~~~~--~~~ 76 (458)
|..|+-..++++..+--+-+|+|||..- |-++..+... + ....+|++|+.-+-.|-+.++++....- .++
T Consensus 46 Qs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr 125 (569)
T KOG0346 46 QSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLR 125 (569)
T ss_pred HHCCCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43221243248631465226887137889999999997640364324630699925099999999999999998787655
Q ss_pred EEEEE---CCHHHHHHHHCCCCCEEEECCCCHHHHHHH--CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99985---897898887307798699806420233442--0001132204404531002465431156777766543059
Q gi|255764515|r 77 ISVIT---GTVKQRTKVLKTPAVLYVINFENLGWLVQE--LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES 151 (458)
Q Consensus 77 ~~~~~---g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~--~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~ 151 (458)
+.-+. .++..+ .++....+|+|.|...+-..... +.....-..+|+|||--+-+.+. ..-.+.+....+..
T Consensus 126 ~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGY---eedlk~l~~~LPr~ 201 (569)
T KOG0346 126 AINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGY---EEDLKKLRSHLPRI 201 (569)
T ss_pred HHHHHCCCCHHHHH-HHHCCCCCEEEECHHHHHHHHHHCCCHHHHHEEEEEECHHHHHHHCCC---HHHHHHHHHHCCCH
T ss_conf 54210331167778-887059975871718899998606302120102578503566642360---88899998748825
Q ss_pred CEEEEECCCC
Q ss_conf 8079965840
Q gi|255764515|r 152 ERFIELTGTP 161 (458)
Q Consensus 152 ~~~l~LTgTP 161 (458)
...++||||-
T Consensus 202 ~Q~~LmSATl 211 (569)
T KOG0346 202 YQCFLMSATL 211 (569)
T ss_pred HHHEEEHHHH
T ss_conf 6502003135
No 117
>KOG0950 consensus
Probab=99.10 E-value=2.2e-08 Score=69.00 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=89.6
Q ss_pred CCCHHHHHHHH--HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 87478999999--9996798099958899868999999999997599949999160-46569999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVD--WILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~--~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~ 78 (458)
+|+.||.+... .++++++++...+++.|||+.|-..+......-.+.+|.+.|- +++. -=..+..-|....+..+.
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~-Ek~~~l~~~~~~~G~~ve 301 (1008)
T KOG0950 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQ-EKISALSPFSIDLGFPVE 301 (1008)
T ss_pred HHHHHHHHHHCCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCEEEECCEEEHHH-HHHHHHHHHCCCCCCCCH
T ss_conf 8999999871465342356558857876406799999999999887421167424210258-777640022033588622
Q ss_pred EEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCC---CCCEEECCCCCCCCCCCCCCHHHH----HHHHHHHHHCC
Q ss_conf 98589789888730779869980642023344200011---322044045310024654311567----77766543059
Q gi|255764515|r 79 VITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTW---PFATIVVDESTKLKSFRLRQGSKT----ARALAKPAWES 151 (458)
Q Consensus 79 ~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~---~~~~iIiDEaH~lkn~~~~~~s~~----~~~l~~~~~~~ 151 (458)
-+.|... .........+.+++.|+...+...+...- ..++|++||-|.+-... .+.-. .+.+......+
T Consensus 302 ~y~g~~~--p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~--rg~~lE~~l~k~~y~~~~~~ 377 (1008)
T KOG0950 302 EYAGRFP--PEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG--RGAILELLLAKILYENLETS 377 (1008)
T ss_pred HHCCCCC--CCCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--CCHHHHHHHHHHHHHCCCCC
T ss_conf 1126689--9886441045542037667688888761783304728975224640356--35589999999999632563
Q ss_pred CEEEEECCCCHHHH
Q ss_conf 80799658402310
Q gi|255764515|r 152 ERFIELTGTPSPNG 165 (458)
Q Consensus 152 ~~~l~LTgTPi~n~ 165 (458)
-..++|||| ++|.
T Consensus 378 ~~iIGMSAT-i~N~ 390 (1008)
T KOG0950 378 VQIIGMSAT-IPNN 390 (1008)
T ss_pred EEEEEEECC-CCCH
T ss_conf 467655241-4774
No 118
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.07 E-value=1.8e-08 Score=69.61 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=74.4
Q ss_pred HHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHH---HHHHHHHHHCCCCC--CEEEEEEC
Q ss_conf 99999996798099958899868999-99999999759994999916046569---99999998558888--15999858
Q gi|255764515|r 9 KIVDWILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPLRVAQS---VWTSEVQRWSNFSH--MNISVITG 82 (458)
Q Consensus 9 ~~v~~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~~l~~~---~W~~Ei~kf~~~~~--~~~~~~~g 82 (458)
+.++.+.+++..+|..++|+|||=+. ..++..-. ...++++.-|..+..- .+..+. -....+ +.|.+-..
T Consensus 12 ~i~~~l~~~~~~vl~a~tGsGKtTqvP~~ll~~~~--~~g~I~~~qPRR~AA~s~A~RvA~e--~~e~~G~~VGY~vR~e 87 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQQGG--INGKIIMLEPRRLAARNVAQRLAEQ--LGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCC--CCCCEEEECCHHHHHHHHHHHHHHH--HCCCCCCEEEEEECCC
T ss_conf 99999997997999908999989999999996468--8993899388399999999999997--2999998675782567
Q ss_pred CHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCEEEEECC
Q ss_conf 978988873077986998064202334420001132204404531002465431156777766543---05980799658
Q gi|255764515|r 83 TVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA---WESERFIELTG 159 (458)
Q Consensus 83 ~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~---~~~~~~l~LTg 159 (458)
+ + ......+.++|...+-.....--....+++||+||+|.= + -...-..-.+..+. ...-++++|||
T Consensus 88 ~-~-----~s~~Tri~~~T~GiLlr~l~~dp~L~~~~~vI~DE~HER-~---l~~Dl~l~l~~~~~~~~r~dLklvvMSA 157 (812)
T PRK11664 88 S-K-----VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHER-S---LQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred C-C-----CCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEECCCCC-C---HHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7-8-----899857999755899999724977677888999575468-7---5189999999999986189828999847
Q ss_pred CCHHHHCCCHHHHHHHC
Q ss_conf 40231001013467751
Q gi|255764515|r 160 TPSPNGLIDLWGQIWFL 176 (458)
Q Consensus 160 TPi~n~~~el~~ll~~l 176 (458)
|.-.....++++-+..+
T Consensus 158 Tld~~~~~~~~~~~~~i 174 (812)
T PRK11664 158 TLDNDRLQQLLPDAPYI 174 (812)
T ss_pred CCCHHHHHHHCCCCCEE
T ss_conf 88848899758999889
No 119
>KOG0353 consensus
Probab=99.07 E-value=2.6e-08 Score=68.62 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-HHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160-4656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL-RVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~-~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
+++|-|+++++.........+..++|-||++.- -+-.|. ...-+|||||- |++++|-. .+.. . +++...+
T Consensus 94 kfrplq~~ain~~ma~ed~~lil~tgggkslcy--qlpal~--adg~alvi~plislmedqil-~lkq-l---gi~as~l 164 (695)
T KOG0353 94 KFRPLQLAAINATMAGEDAFLILPTGGGKSLCY--QLPALC--ADGFALVICPLISLMEDQIL-QLKQ-L---GIDASML 164 (695)
T ss_pred HCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHH--CCCCEEEECHHHHHHHHHHH-HHHH-H---CCCHHHC
T ss_conf 347037877555222674699983799612452--235876--28745761026888899999-9998-0---8644430
Q ss_pred E-CCHHHHHH-----HHCCCCC--EEEECCCCHHH------HHHHCCCCCCCCEEECCCCCCCCCCCC--CCHHHHHHHH
Q ss_conf 5-89789888-----7307798--69980642023------344200011322044045310024654--3115677776
Q gi|255764515|r 81 T-GTVKQRTK-----VLKTPAV--LYVINFENLGW------LVQELKGTWPFATIVVDESTKLKSFRL--RQGSKTARAL 144 (458)
Q Consensus 81 ~-g~~~~r~~-----~~~~~~~--i~i~s~e~~~~------~~~~~~~~~~~~~iIiDEaH~lkn~~~--~~~s~~~~~l 144 (458)
. +++++-.+ +.+.++. .+-++.|.+.. ..+.-..-..|.++-+||.|-+.-++- ....+....+
T Consensus 165 nansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~il 244 (695)
T KOG0353 165 NANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGIL 244 (695)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEHHHHCCCCCCCHHHHHHH
T ss_conf 57554888989999870777615899964899877799999999876426048985310232654376657416888899
Q ss_pred HHHHHCCCEEEEECCCCHHHHCCCHH
Q ss_conf 65430598079965840231001013
Q gi|255764515|r 145 AKPAWESERFIELTGTPSPNGLIDLW 170 (458)
Q Consensus 145 ~~~~~~~~~~l~LTgTPi~n~~~el~ 170 (458)
.+-.. .--.++||||...|-+.|.-
T Consensus 245 krqf~-~~~iigltatatn~vl~d~k 269 (695)
T KOG0353 245 KRQFK-GAPIIGLTATATNHVLDDAK 269 (695)
T ss_pred HHHCC-CCCEEEEEHHHHCCHHHHHH
T ss_conf 97579-99656323110000356788
No 120
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.00 E-value=1.3e-07 Score=64.35 Aligned_cols=153 Identities=17% Similarity=0.115 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCHHHH---HHHHH-HHHHHCCCCCCEEEE
Q ss_conf 899999999967980999588998689999999999975999499991--604656---99999-999855888815999
Q gi|255764515|r 6 HQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA--PLRVAQ---SVWTS-EVQRWSNFSHMNISV 79 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~--P~~l~~---~~W~~-Ei~kf~~~~~~~~~~ 79 (458)
|-.+.++.+.+|.=.+++.|+|+|||=|.=-++... -.|. ...|+| |..+.. ..... |... .-...+.|.+
T Consensus 78 ~r~~i~~~i~~nqVvii~GeTGsGKTTQiPq~~le~-g~g~-~~~I~~TQPRRiAA~svA~RVA~E~~~-~lG~~VGY~V 154 (1295)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-GRGI-KGLIGHTQPRRLAARTVANRIAEELET-ELGGCVGYKV 154 (1295)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHC-CCCC-CCEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEEEE
T ss_conf 999999999979969997689998788999999962-7999-998997796599999999999998199-9899888894
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEE
Q ss_conf 85897898887307798699806420233442000113220440453100246543115677776654305--9807996
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE--SERFIEL 157 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~--~~~~l~L 157 (458)
-.. +.......+..+|-..+-.....-.....++.||+||+|.= +-..--..-.+..+..+ .-++++|
T Consensus 155 Rf~------~~~s~~t~i~~~TdGiLL~e~~~d~~L~~y~~iIiDEaHER----sl~~D~LLg~Lk~ll~~R~dLKvIim 224 (1295)
T PRK11131 155 RFN------DQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHER----SLNIDFILGYLKELLPRRPDLKVIIT 224 (1295)
T ss_pred CCC------CCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 569------88799977999765699998620998788777998685568----80199999999999833999889995
Q ss_pred CCCCHHHHCCCHHH
Q ss_conf 58402310010134
Q gi|255764515|r 158 TGTPSPNGLIDLWG 171 (458)
Q Consensus 158 TgTPi~n~~~el~~ 171 (458)
|||.-.......|+
T Consensus 225 SATid~e~fs~yF~ 238 (1295)
T PRK11131 225 SATIDPERFSRHFN 238 (1295)
T ss_pred CCCCCHHHHHHHCC
T ss_conf 58689799996579
No 121
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=98.98 E-value=5.5e-09 Score=72.66 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=72.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEE
Q ss_conf 99958899868999999999997599949999160465699999999855888815999858978988873077986998
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVI 100 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~ 100 (458)
.+-.-+|+|||-..|--+..-......++||++|+.++. +|...-......+ ..+.. ..........+.++
T Consensus 6 ~ld~HPGaGKTr~vLP~~v~~~i~~~lRtlVLaPTRVV~----~Em~eAL~g~~vr--~~t~a---~~~~~~~~~ivdvm 76 (146)
T pfam07652 6 VLDLHPGAGKTRKVLPELVRECIDRRLRTLVLAPTRVVL----AEMEEALRGLPIR--YHTPA---VSSEHTGREIVDVM 76 (146)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHH----HHHHHHHCCCCCE--EECHH---HHCCCCCCCEEEEE
T ss_conf 985389999702248999999997286189977279999----9999997589946--75234---31366888418897
Q ss_pred CCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH-HH-HCCCEEEEECCCC
Q ss_conf 0642023344200011322044045310024654311567777665-43-0598079965840
Q gi|255764515|r 101 NFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAK-PA-WESERFIELTGTP 161 (458)
Q Consensus 101 s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~-~~-~~~~~~l~LTgTP 161 (458)
.+-++....-.-....+|.++|+||||.. ++ .|-+.+-... .. ..-...++|||||
T Consensus 77 CHAT~t~r~l~~~~~~ny~viIMDE~H~~-DP----~SIAarG~~~~~~~~g~~a~i~mTATP 134 (146)
T pfam07652 77 CHATFTQRLLSPVRVPNYEVIIMDEAHFT-DP----ASIAARGYISTLVELGEAAAIFMTATP 134 (146)
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEECCCCC-CH----HHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 15988889736888564479998512238-98----999988999988543865799995689
No 122
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=4.3e-06 Score=55.17 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .++..-..+++-||+..--+ -..|...+-.|. ++.+
T Consensus 77 lg~r~ydvQl~Gg~~L~~G~iaEM~TGEGKTL~atlp-~ylnaL~GkgvhvvTvNdYLA~RDae~m~~vy~~l---Gltv 152 (823)
T PRK12906 77 LGLYPFDVQIIGGIALHFGNIAEMRTGEGKTLTATLP-VYLNALEGKGVHVVTVNEYLAKRDATEMGELYRWL---GLTV 152 (823)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHC---CCEE
T ss_conf 3897647899989998369525650688589999999-99986469980898054465586799999999980---9667
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.+ ++..|...+..+ ..+.++.+. |..+.+. ..-..++...||||+-.+
T Consensus 153 g~i~~~~~~~err~aY~~D-ItY~Tn~e~gFDYLRDnm~~~~~~~vqr~~~~aIvDEvDSi 212 (823)
T PRK12906 153 GLNLNDMSPDEKREAYNCD-ITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (823)
T ss_pred EEECCCCCHHHHHHHHCCC-CEEECCCCEECCCCCCCCCCCHHHHCCCCCCEEEEECHHHH
T ss_conf 1208999989999985078-44625655021113544126888834788855898541465
No 123
>KOG0337 consensus
Probab=98.85 E-value=1.4e-07 Score=64.20 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=75.7
Q ss_pred EEEEE-CCCCCHHHHH-HHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE-EEECCHHHH-HHHHCC
Q ss_conf 09995-8899868999-999999997--59994999916046569999999985588881599-985897898-887307
Q gi|255764515|r 20 CAIWA-SMGSGKTVSV-LTALSYIHL--WGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS-VITGTVKQR-TKVLKT 93 (458)
Q Consensus 20 ~ll~~-~~G~GKT~~a-l~~~~~l~~--~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~-~~~g~~~~r-~~~~~~ 93 (458)
-+.++ -+|+|||..- |-+++.|.. +..-+.||+.|+.-+.-|=.+-++.+..+-.++.. .+.|+..+. ...+..
T Consensus 60 dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~ 139 (529)
T KOG0337 60 DVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE 139 (529)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCC
T ss_conf 21005522786104678899999861364462024326708899999999998515421121011263248899998415
Q ss_pred CCCEEEECCCCHHHHHHH-CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 798699806420233442-0001132204404531002465431156777766543059807996584
Q gi|255764515|r 94 PAVLYVINFENLGWLVQE-LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 94 ~~~i~i~s~e~~~~~~~~-~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
..++++.|...+....-+ .........||+||+.++--.+- ..+..+.+.++.- +.-.+++|||
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgf--qeql~e~l~rl~~-~~QTllfSat 204 (529)
T KOG0337 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGF--QEQLHEILSRLPE-SRQTLLFSAT 204 (529)
T ss_pred CCCEEEECCCEEEEEEHHEECCCCCEEEEEEHHHHHHHHHHH--HHHHHHHHHHCCC-CCEEEEEECC
T ss_conf 998798248513420021001213225664101347876536--8999999875777-6307998523
No 124
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.79 E-value=7.6e-06 Score=53.66 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH---HHHHHHHHHHCCCCCCEE
Q ss_conf 98747899999999967980999588998689999999999975999499991604656---999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ---SVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~---~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .++..-..+++-||+...-+. ..|...+-.|+ ++.|
T Consensus 75 lg~~~~dvQl~g~~~l~~g~iaEm~TGEGKTL~a~l~-~~l~al~g~~vhvvTvNdYLA~RDa~~m~~iy~~l---Gl~v 150 (799)
T PRK09200 75 LGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMP-LYLNALEGKGVHLITTNDYLAKRDFEEMGQVYEFL---GLTV 150 (799)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHC---CCEE
T ss_conf 5997656899989998469524551788589999999-99997469981898005577788799999999982---9658
Q ss_pred EEEEC-------CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC------CCCCCCCEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99858-------9789888730779869980642-02334420------0011322044045310024654311567777
Q gi|255764515|r 78 SVITG-------TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL------KGTWPFATIVVDESTKLKSFRLRQGSKTARA 143 (458)
Q Consensus 78 ~~~~g-------~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~------~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~ 143 (458)
.+..+ ++..|...+..+ .++.++.+. +..+.+.+ .-..++...||||+-.+ .
T Consensus 151 g~~~~~~~~~~~~~~~r~~~Y~~d-i~Y~tn~e~gfDyLrDn~~~~~~~~v~r~~~~aivDEvDsi-------------L 216 (799)
T PRK09200 151 GLNFSDIDDYEYQAGEKKAIYEAD-IIYTTNSELGFDYLRDNLADSKEDKVLRPLNYAIIDEVDSI-------------L 216 (799)
T ss_pred EECCCCCCCCCCCHHHHHHHHHCC-CEECCCCCCHHHHHCCCCCCCHHHCCCCCCCEEEEECHHHH-------------H
T ss_conf 333688864437979999887477-22235654003453012015676525778966898532667-------------7
Q ss_pred HHHHHHCCCEEEEECCCCHHHHCCCHHHHHH
Q ss_conf 6654305980799658402310010134677
Q gi|255764515|r 144 LAKPAWESERFIELTGTPSPNGLIDLWGQIW 174 (458)
Q Consensus 144 l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~ 174 (458)
+ ..|..=+.+||.|-. ..++|..++
T Consensus 217 i----DeArtPliisg~~~~--~~~~~~~~~ 241 (799)
T PRK09200 217 L----DEAQTPLVISGAPRV--QSNLYHIAA 241 (799)
T ss_pred H----HCCCCCCEECCCCCC--CHHHHHHHH
T ss_conf 7----413564121489876--527999999
No 125
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=1.3e-05 Score=52.26 Aligned_cols=123 Identities=18% Similarity=0.283 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|...+-.|+ ++.+
T Consensus 79 lg~r~~dvQl~gg~~lh~g~iaEM~TGEGKTL~atlp-~ylnal~g~gvhvvTvNdYLA~RDae~m~~~y~~l---Gltv 154 (896)
T PRK13104 79 LGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLP-AYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFL---GLTV 154 (896)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 3897647999989998458514651788559999999-99987559971997265354464499999999981---9767
Q ss_pred EEEEC--CHHHHHHHHCCCCCE-EEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--978988873077986-9980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVL-YVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i-~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. +...|...+.. +| +.++.+. |..+.+. ..-..++...||||+-.+
T Consensus 155 g~i~~~~~~~~r~~aY~~--DitY~Tn~e~gFDyLrDnm~~~~~~~vqr~~~~aivDEvDSi 214 (896)
T PRK13104 155 GVIYPDMSHKEKQEAYKA--DIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred EEECCCCCHHHHHHHHCC--CEEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHH
T ss_conf 341899997999997149--937967865415235721113847625667764787422354
No 126
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=1.3e-05 Score=52.32 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|...+-.|+ ++.|
T Consensus 79 lg~r~~dvQl~gg~~lh~g~iaEM~TGEGKTL~atlp-~ylnal~g~gvhvvTvNdYLA~RDae~m~~~y~~l---Gltv 154 (913)
T PRK13103 79 MGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLA-VYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFL---GLSV 154 (913)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 4897646899989998468514651788559999999-99987559970997265365586699999999981---9768
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.++.+. |..+.+. ..-..++...||||+-.+
T Consensus 155 g~i~~~~~~~~r~~aY~~D-itY~tn~e~gFDyLRDnm~~~~~~~vqr~~~~aivDEvDSi 214 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAAD-ITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred EECCCCCCHHHHHHHCCCC-CEEECCCCCCCCCCCCCHHCCHHHHCCCCCCEEEEECHHHH
T ss_conf 5518999979999746688-64435764335345733104878843667764787423555
No 127
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=1.3e-05 Score=52.29 Aligned_cols=124 Identities=16% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .++..-..+++-||+..--+ -..|...+-+|+ ++.|
T Consensus 78 lg~~~~dvQl~gg~~l~~g~iaEM~TGEGKTL~atlp-~ylnal~g~gvhvvTvNdYLA~RDa~~m~~~~~~l---Gltv 153 (833)
T PRK12904 78 LGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLP-AYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYNFL---GLSV 153 (833)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 5897647899989999469524650688589999999-99997369981998155577787799999999981---9788
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.++.+. |..+.+. ..-..++...||||+-.+
T Consensus 154 g~i~~~~~~~~r~~aY~~d-itY~tn~e~gFDyLrDnm~~~~~~~v~r~~~~aivDE~DSi 213 (833)
T PRK12904 154 GVILSGMSPEERREAYAAD-ITYGTNNEFGFDYLRDNMVFSLEDRVQRGLNYAIVDEVDSI 213 (833)
T ss_pred EEECCCCCHHHHHHHHHCC-EEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCHHH
T ss_conf 0438999839999986377-13412543245412555437889875012572688641132
No 128
>KOG1802 consensus
Probab=98.74 E-value=1.6e-07 Score=63.75 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 8747899999999967980999588998689999999999975999499991604656999999998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
+|.--|..||...+.++=.||-.++|+|||+++-++.-++...+..++||++|.++..+|-.+-|.+
T Consensus 410 kLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802 410 KLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred HHCHHHHHHHHHHHCCCCEEEECCCCCCCEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 2246789999999759851554699988331168999999985289569981650028999999986
No 129
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.69 E-value=8.5e-07 Score=59.40 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHH---HHC-CCEEEEECCCCCHHHHHHHHH
Q ss_conf 8747899999999---967-980999588998689999999
Q gi|255764515|r 2 NLAPHQTKIVDWI---LDH-KRCAIWASMGSGKTVSVLTAL 38 (458)
Q Consensus 2 ~L~p~Q~~~v~~~---~~~-~~~ll~~~~G~GKT~~al~~~ 38 (458)
+-||.|.+.++.+ ++. +.+++-.++|+|||+..|..+
T Consensus 8 ~py~~Q~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~a 48 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 99989999999999999749979998999651899999999
No 130
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.69 E-value=8.5e-07 Score=59.40 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHH---HHC-CCEEEEECCCCCHHHHHHHHH
Q ss_conf 8747899999999---967-980999588998689999999
Q gi|255764515|r 2 NLAPHQTKIVDWI---LDH-KRCAIWASMGSGKTVSVLTAL 38 (458)
Q Consensus 2 ~L~p~Q~~~v~~~---~~~-~~~ll~~~~G~GKT~~al~~~ 38 (458)
+-||.|.+.++.+ ++. +.+++-.++|+|||+..|..+
T Consensus 8 ~py~~Q~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~a 48 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 99989999999999999749979998999651899999999
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=2.4e-05 Score=50.63 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .++..-..+++-||+..--+ -..|...+-+|+ ++.|
T Consensus 75 lg~r~ydvQl~gg~~l~~G~iaEM~TGEGKTL~atlp-~ylnal~g~gvhvvTvNdYLA~RDae~m~~~y~~l---Gltv 150 (885)
T PRK12903 75 LGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAP-VYLNALEGKGVIVSTVNEYLAERDAEEMGKVFKFL---GLSV 150 (885)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 1898637899989998459514650688579999999-99987469980898064565585599999999982---9656
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.++.+. +..+.+. ..-..++...|+||+-.+
T Consensus 151 g~~~~~~~~~~r~~aY~~d-itY~tn~e~gFDyLrDnm~~~~~~~vqr~~~~aIvDEvDSi 210 (885)
T PRK12903 151 GINKANMDPNLKREAYNCD-ITYSTHSELGFDYLRDNMVSSYEEKVQRGLNFCLIDEVDSI 210 (885)
T ss_pred EECCCCCCHHHHHHHHCCC-CEEECCCCEEECCCCCCCCCCHHHHCCCCCCEEEEECCHHH
T ss_conf 0118999979999985699-67977865030114001135837725889980366541144
No 132
>KOG0953 consensus
Probab=98.65 E-value=1.1e-06 Score=58.72 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=56.4
Q ss_pred CCCEEEEHHHHH-----HHHHH----HHHCCCCCCCHHHHHHHHHHHCC--CCCCEEEEEHHHCCCCCCCCCCCCEEEEE
Q ss_conf 884034222367-----88866----41000265334458998764245--88558998442211162200178599990
Q gi|255764515|r 320 NAAPIIVAYHFN-----SDLAR----LQKAFPQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFF 388 (458)
Q Consensus 320 ~~~kviif~~~~-----~~~~~----i~~~~~~g~~~~~r~~~i~~f~~--~~~~vli~s~~~~~~GlnL~~a~~~iI~~ 388 (458)
.|..++-|+... ..++. ....+.++-+++.|..--..||+ ++++||++| +|.|.||||. -++|||+
T Consensus 357 ~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~--IrRiiF~ 433 (700)
T KOG0953 357 PGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN--IRRIIFY 433 (700)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE-CCCCCCCCCC--EEEEEEE
T ss_conf 887699941114888899999855855489955899730688898737988762568862-3214554443--1179875
Q ss_pred CCC---------CCHHHHHHHHHHHHC
Q ss_conf 899---------898686445666620
Q gi|255764515|r 389 SLW---------WDLEEHQQMIERIGV 406 (458)
Q Consensus 389 ~~~---------wn~~~~~Q~~gRi~~ 406 (458)
++- -+.+...|.-||.-|
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953 434 SLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred ECCCCCCCCCEECCHHHHHHHHHCCCC
T ss_conf 035677662102568999988510154
No 133
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=3.2e-05 Score=49.87 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+++.-..+++-||+..--+ -..|...+-.|+ ++.+
T Consensus 115 lg~r~ydvQliGg~~Lh~G~IaEM~TGEGKTL~atlp-aylnAL~G~gVHvvTvNDYLA~RDae~mg~iy~fL---GLsv 190 (673)
T PRK12898 115 LGMRHFPVQLMGGLALLEGWLAEMQTGEGKTLTATLP-AGTAALAGRPVHVITVNDYLAERDAEQMRPLYEAL---GVTV 190 (673)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 3898646899989998458435750788589999999-99997369970898045577787699999999982---9778
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC-------------------------CCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-02334420-------------------------00113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL-------------------------KGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~-------------------------~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++.+|...+..+ ..+.+|-|. |..+.+.+ .-..++...||||+-.+
T Consensus 191 g~i~~~~~~~eRr~aY~~D-ItYgTn~E~GFDYLRDnm~~~~~~~~~~~~~~~l~~~~~~~~~~vqR~l~fAIVDEvDSI 269 (673)
T PRK12898 191 GCVIEDQDPEERRAAYGAD-VTYCTNKELVFDYLRDRIALGQRAGDARLALESLRGGSERSGQLLLRGLHFAIVDEADSV 269 (673)
T ss_pred EEECCCCCHHHHHHHHCCC-CEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCEEEEECHHHE
T ss_conf 4517999979999972699-579565233245776413023343211111011013346677751356753787330331
No 134
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=5e-05 Score=48.68 Aligned_cols=124 Identities=13% Similarity=0.200 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|...+-.|+ ++.+
T Consensus 79 lg~r~ydvQl~gg~~Lh~G~iaEM~TGEGKTL~atlp-~ylnal~g~gvhvvTvNdYLA~RDae~m~~vy~~l---Glsv 154 (908)
T PRK13107 79 FEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLP-AYLNALTGKGVHVITVNDYLARRDAENNRPLFEFL---GLTV 154 (908)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 3897547999989998469514651788559999999-99987559970997265355475499999999981---9757
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.+|.|. |..+.+. ..-..++...||||+-.+
T Consensus 155 g~i~~~~~~~er~~aY~~D-itY~Tn~e~gFDYLRDnm~~~~~~~vqr~~~~aivDEvDSi 214 (908)
T PRK13107 155 GINVAGLGQQEKKAAYNAD-ITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSI 214 (908)
T ss_pred EECCCCCCHHHHHHHCCCC-CEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHH
T ss_conf 3317999969999845688-64535764234235743015758753567764887422354
No 135
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.57 E-value=2.7e-06 Score=56.37 Aligned_cols=65 Identities=18% Similarity=0.126 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHH---HHH---CCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH-HHHHH
Q ss_conf 874789999999---996---7980-99958899868999999999997599949999160465699-99999
Q gi|255764515|r 2 NLAPHQTKIVDW---ILD---HKRC-AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSV-WTSEV 66 (458)
Q Consensus 2 ~L~p~Q~~~v~~---~~~---~~~~-ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~-W~~Ei 66 (458)
+-||-|.+-... .+. +++. ++=+++|+|||+--|.-+........++++|-+++..+++| +.+++
T Consensus 25 e~R~~Q~~Ma~~V~~al~~~~~~~~l~iEAgTGtGKTlaYL~Pai~~a~~~~~~vvIST~T~~LQeQL~~kDl 97 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYGRHILVIEAGTGVGKSLAYLLAGIPIARAEKKKLVISTATVALQEQLVHKDL 97 (697)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 7187899999999999616667866999899972089999999999999829979998898899999987079
No 136
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=98.55 E-value=2e-06 Score=57.12 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 4789999999996798099958899868999999999997599-949999160465699999999855888815999858
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGE-KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITG 82 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g 82 (458)
-+.|..+++.+.++.-..+..+.|+|||+.|++++..+...+. .+++|+=|. ++. .+++ ..+.|
T Consensus 6 ~~~Q~~~~~~l~~~~iv~~~GpAGtGKT~la~~~al~~l~~~~~~kiii~Rp~--v~~--g~~i-----------GfLPG 70 (205)
T pfam02562 6 TLGQKRYVEAIRKNDIVFGIGPAGTGKTYLAVAAAVDALKDGKVKRIILTRPA--VEA--GEKL-----------GFLPG 70 (205)
T ss_pred CHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC--CCC--CCCC-----------CCCCC
T ss_conf 88899999997179807998999860999999999999971894379997577--125--7754-----------55889
Q ss_pred CHHHH--------------------HHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 97898--------------------8873077986998064202334420001132204404531002465431156777
Q gi|255764515|r 83 TVKQR--------------------TKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTAR 142 (458)
Q Consensus 83 ~~~~r--------------------~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~ 142 (458)
+-.++ .+.+.....+-+.+...++. -++.-..||+|||+++ ...+..-
T Consensus 71 ~~~eK~~p~~~p~~d~l~~~~~~~~~~~l~~~~~Ie~~pl~~iRG------rTf~n~~iIvDEaQN~------t~~~lk~ 138 (205)
T pfam02562 71 DLEEKVDPYLRPLYDALYDMLGAEKVEKLIERGVIEIAPLAYMRG------RTLNDAFIILDEAQNT------TPEQMKM 138 (205)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEECCHHHHCC------CCCCCCEEEEECHHCC------CHHHHHH
T ss_conf 789999999999999999872899999999759756614676554------7625688999722139------9999999
Q ss_pred HHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 76654305980799658402310
Q gi|255764515|r 143 ALAKPAWESERFIELTGTPSPNG 165 (458)
Q Consensus 143 ~l~~~~~~~~~~l~LTgTPi~n~ 165 (458)
.+.++...+ ++.++|-|.|..
T Consensus 139 ilTRiG~~S--K~vi~GD~~Q~D 159 (205)
T pfam02562 139 FLTRIGFNS--KMVVTGDITQID 159 (205)
T ss_pred HHHHCCCCC--EEEEECCHHHCC
T ss_conf 984217996--899947866517
No 137
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.53 E-value=2.8e-06 Score=56.33 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=68.2
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHHCCCCCEEEEECCHHHH-HHHHHHHHHHCCCCC--CEEEEEECCHH
Q ss_conf 99999967980999588998689999-999999975999499991604656-999999998558888--15999858978
Q gi|255764515|r 10 IVDWILDHKRCAIWASMGSGKTVSVL-TALSYIHLWGEKSVLVIAPLRVAQ-SVWTSEVQRWSNFSH--MNISVITGTVK 85 (458)
Q Consensus 10 ~v~~~~~~~~~ll~~~~G~GKT~~al-~~~~~l~~~~~~~~LIv~P~~l~~-~~W~~Ei~kf~~~~~--~~~~~~~g~~~ 85 (458)
..+.+.++...+|..++|+|||=+.= .+++.-. .+...+.+.=|..+.. +.=.+-.+.+....+ +.|.+-..+..
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~ 136 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV 136 (845)
T ss_pred HHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 9999986978998679988758788999996001-668759965843899999999999983898676543799962267
Q ss_pred HHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH---HHHCCCEEEEECCCCH
Q ss_conf 9888730779869980642023344200011322044045310024654311567777665---4305980799658402
Q gi|255764515|r 86 QRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAK---PAWESERFIELTGTPS 162 (458)
Q Consensus 86 ~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~---~~~~~~~~l~LTgTPi 162 (458)
.....+-++|=..+-.....-.....+++||+||+|.= +-...-....+.. ....--+++.||||-=
T Consensus 137 ------s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER----Sl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 137 ------SPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER----SLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred ------CCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf ------87714689514799999843802045877997013355----68889999999999864688705999725358
Q ss_pred HHHCCCHHHHHH
Q ss_conf 310010134677
Q gi|255764515|r 163 PNGLIDLWGQIW 174 (458)
Q Consensus 163 ~n~~~el~~ll~ 174 (458)
..+.+.+|+..-
T Consensus 207 ~~rfs~~f~~ap 218 (845)
T COG1643 207 AERFSAYFGNAP 218 (845)
T ss_pred HHHHHHHCCCCC
T ss_conf 899997628998
No 138
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=6.8e-05 Score=47.89 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+.-+.+|=|||++|... .++..-..+++-||+..--+ -..|...+-.|+ ++.+
T Consensus 86 lG~r~ydVQliGg~~L~~G~IaEM~TGEGKTL~atlp-aylnAL~GkgVHvVTvNDYLA~RDaewm~piy~fL---GLtv 161 (775)
T PRK12326 86 LGLRPFDVQLLGALRLLAGDVVEMATGEGKTLAGAIA-AAGYALGGRRVHVITVNDYLARRDAEWMGPLLEAF---GLTV 161 (775)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 3898646899989998459536760688589999999-99996369980898225687887699999999982---9776
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.++.+. |..+.+. ..-..+++..||||+-.+
T Consensus 162 g~i~~~~~~~err~aY~~D-ItY~Tn~E~GFDYLRDnm~~~~~~~vqr~~~faIVDEvDSI 221 (775)
T PRK12326 162 GWITEESTAEERRAAYACD-VTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 221 (775)
T ss_pred CCCCCCCCHHHHHHHCCCC-CCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCEEEEECCCHH
T ss_conf 5378999979999844687-73115555324455132126988843677875998642000
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.49 E-value=8.5e-05 Score=47.30 Aligned_cols=124 Identities=19% Similarity=0.337 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .++..-..+++-||+..--+ -..|...+-+|+ ++.|
T Consensus 73 lg~r~~dvQl~gg~~Lh~G~iaEM~TGEGKTL~atlp-~ylnal~GkgvhvvTvNdYLA~RDae~m~~vy~~l---Glsv 148 (891)
T CHL00122 73 LGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLP-AYLNALTGKGVHIVTVNDYLARRDSEWMGQIYRFL---GLSV 148 (891)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 4897646999989998459524650688579999999-99997559972998064565686699999999982---9667
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH------CCCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-0233442------000113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~------~~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.+|.+. |..+.+. ..-..++...||||+-.+
T Consensus 149 g~i~~~~~~~er~~aY~~D-ItY~Tn~e~gFDyLRDnm~~~~~~~vqr~~~~aIvDEvDSi 208 (891)
T CHL00122 149 GLIQEDMSIEERKQNYKAD-ITYVTNSELGFDYLRDNMALSLSEVVQRPFNYCIIDEVDSI 208 (891)
T ss_pred EEECCCCCHHHHHHHHCCC-CEEECCCCEECCCCCCCCCCCHHHHHCCCCCEEEEECHHHH
T ss_conf 0208999979999983589-27978876222566633236878840889973788640455
No 140
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.41 E-value=2.2e-06 Score=56.95 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCHHHHHHHHHH-HHHHCCCCCCEEEEE
Q ss_conf 789999999996798099958899868999999999997---5999499991604656999999-998558888159998
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHL---WGEKSVLVIAPLRVAQSVWTSE-VQRWSNFSHMNISVI 80 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~---~~~~~~LIv~P~~l~~~~W~~E-i~kf~~~~~~~~~~~ 80 (458)
+||+.|+...+.++-++|-..+|+|||-+...++..+.. ....++...+|+.-...- -.| +..-...-.+
T Consensus 150 dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaR-L~Esi~~~~~~l~~----- 223 (607)
T PRK10875 150 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAAR-LTESLGKALRQLPL----- 223 (607)
T ss_pred CHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH-HHHHHHHHHHHCCC-----
T ss_conf 189999999875577899679998778899999999999645899708998822899999-99999878753476-----
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCH-------HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
Q ss_conf 5897898887307798699806420-------233442000113220440453100246543115677776654305980
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENL-------GWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESER 153 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~-------~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~ 153 (458)
+...+. .+.. -..|...+ .....+-.+..++|+||||||-.+ ...-..+.+..+.. .-
T Consensus 224 --~~~~~~-~~p~----~a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEASMV------Dl~Lm~~LL~Alp~--~a 288 (607)
T PRK10875 224 --TDEQKK-RIPE----DASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMI------DLPMMSRLIDALPD--HA 288 (607)
T ss_pred --CHHHHH-CCCC----CCEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH------HHHHHHHHHHHCCC--CC
T ss_conf --656663-3765----566589752967898765657799998898999073366------59999999982899--98
Q ss_pred EEEECCCCHH
Q ss_conf 7996584023
Q gi|255764515|r 154 FIELTGTPSP 163 (458)
Q Consensus 154 ~l~LTgTPi~ 163 (458)
+++|=|-|-|
T Consensus 289 RLILvGD~dQ 298 (607)
T PRK10875 289 RVIFLGDRDQ 298 (607)
T ss_pred EEEEECCHHH
T ss_conf 8999656232
No 141
>KOG1803 consensus
Probab=98.40 E-value=2.4e-06 Score=56.71 Aligned_cols=58 Identities=31% Similarity=0.375 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf 74789999999996798-099958899868999999999997599949999160465699
Q gi|255764515|r 3 LAPHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSV 61 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~ 61 (458)
|.+-|..|+.+...++. .++-.+||+|||.+...++..+..++ +++||.+|+++..+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdN 244 (649)
T KOG1803 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDN 244 (649)
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHCC-CEEEEECCCHHHHHH
T ss_conf 23779999999735688357557998884043999999999728-859997673678999
No 142
>KOG0349 consensus
Probab=98.40 E-value=2.3e-06 Score=56.79 Aligned_cols=94 Identities=16% Similarity=0.282 Sum_probs=75.1
Q ss_pred HCCCCCEEEEHHHHHHHHHHHHH-------------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCC
Q ss_conf 12488403422236788866410-------------00265334458998764245885589984422111622001785
Q gi|255764515|r 317 EKANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 383 (458)
Q Consensus 317 ~~~~~~kviif~~~~~~~~~i~~-------------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~a~~ 383 (458)
++..-.++||||..+..-+.+.+ .++++..+++|.+-++.|...+++.|||+ ++++-||+++ +-.
T Consensus 501 ~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict-dvaargldi~-g~p 578 (725)
T KOG0349 501 RRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT-DVAARGLDIT-GLP 578 (725)
T ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEE-HHHHCCCCCC-CCC
T ss_conf 55346745999703566167999998727864036888247882677887876652572799971-0443566542-772
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHCCC
Q ss_conf 9999089989868644566662022020378
Q gi|255764515|r 384 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 414 (458)
Q Consensus 384 ~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq 414 (458)
.+|+..+|-....+--++||+ .||.|.|-
T Consensus 579 ~~invtlpd~k~nyvhrigrv--graermgl 607 (725)
T KOG0349 579 FMINVTLPDDKTNYVHRIGRV--GRAERMGL 607 (725)
T ss_pred EEEEEECCCCCCHHHHHHHCC--CHHHHCCE
T ss_conf 599985586541154564020--14544050
No 143
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.37 E-value=0.00017 Score=45.42 Aligned_cols=123 Identities=18% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160465---69999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~~ 78 (458)
+|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|...+-+|+ ++.|.
T Consensus 92 ~m~~ydvQliGg~~Lh~G~IaEM~TGEGKTLvatlp-~ylnaL~GkgvHvvTvNdYLA~RDae~m~~vy~fL---Glsvg 167 (983)
T PRK12900 92 DMVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLP-TFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFH---GLSVG 167 (983)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHH---CCEEE
T ss_conf 677774699979998368314551788589999999-99986369982898145676786799999999984---97770
Q ss_pred EEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC------CCCCCCCEEECCCCCCC
Q ss_conf 9858--9789888730779869980642-02334420------00113220440453100
Q gi|255764515|r 79 VITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL------KGTWPFATIVVDESTKL 129 (458)
Q Consensus 79 ~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~------~~~~~~~~iIiDEaH~l 129 (458)
++.. ++..|...+..+ ..+.+|-|. |..+.+.+ .-..++...||||+-.+
T Consensus 168 ~i~~~~~~~err~aY~~D-ItYgTn~E~gFDYLRDnm~~~~~~~vqr~~~~aIVDEvDSi 226 (983)
T PRK12900 168 VILNSMRPEERREQYLCD-ITYGTNNEFGFDYLRDNMAGSPEEMVQRDFYFAIVDEVDSV 226 (983)
T ss_pred EECCCCCHHHHHHHHCCC-CEEECCCCCCCCCCHHCCCCCHHHHCCCCCCEEEEECHHHH
T ss_conf 308999989999987599-57878985424021004477868842788855898441566
No 144
>PRK09694 hypothetical protein; Provisional
Probab=98.37 E-value=5.8e-06 Score=54.36 Aligned_cols=152 Identities=19% Similarity=0.114 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHC--CCCCCEEEE
Q ss_conf 4789999999996798-09995889986899999999999759-9949999160465699999999855--888815999
Q gi|255764515|r 4 APHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWS--NFSHMNISV 79 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~--~~~~~~~~~ 79 (458)
+|=|.. ++-+-..++ .+|-++||.|||=-|+.++..|...+ ...+.+..|+..-.|+=.+-+..|. .++...+..
T Consensus 290 rplQ~~-~~~l~~~PgL~IiEAptG~GKTEAAL~~A~~L~~~~~~~Gl~faLPT~ATaNaMf~Rv~~~~~~~~~~~~v~L 368 (878)
T PRK09694 290 RQLQTL-VDALPLAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEAAASKLFPSPNLIL 368 (878)
T ss_pred CHHHHH-HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 679999-9845679987999758999758999999999997348983699774798899999999999997368997697
Q ss_pred EECCHHHH---H-------------------HHHCC-------CCCEEEECCCCHH-H-------HHHHCCCCCCCCEEE
Q ss_conf 85897898---8-------------------87307-------7986998064202-3-------344200011322044
Q gi|255764515|r 80 ITGTVKQR---T-------------------KVLKT-------PAVLYVINFENLG-W-------LVQELKGTWPFATIV 122 (458)
Q Consensus 80 ~~g~~~~r---~-------------------~~~~~-------~~~i~i~s~e~~~-~-------~~~~~~~~~~~~~iI 122 (458)
.+|..... . ..|.. -..+.|.|.+.+- . ..+.+ ...-..||
T Consensus 369 aHg~a~l~~~~~~l~~~~~~~~~~~~~~~~~~~W~~~~~Kr~LLap~~VGTiDQaLla~L~~kH~~LR~~--gLa~kvvI 446 (878)
T PRK09694 369 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGL--GIGRSVLI 446 (878)
T ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHH--HHCCCEEE
T ss_conf 4473655056665101367654454301577766411102231377154679999998746148999999--86287489
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 045310024654311567777665430598079965840
Q gi|255764515|r 123 VDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 123 iDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
|||+|.. ......-..+.+.-+......+++||||-
T Consensus 447 iDEVHAY---D~Ym~~lL~~lL~wl~~~g~~viLLSATL 482 (878)
T PRK09694 447 VDEVHAY---DAYMNGLLEAVLKAQAQVGGSVILLSATL 482 (878)
T ss_pred EECCCCC---CHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 7253334---58899999999999998399889992789
No 145
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.36 E-value=4.5e-06 Score=55.01 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH----HHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 47899999999967980999588998689999999----99997599--9499991604656999999998558888159
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVSVLTAL----SYIHLWGE--KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~----~~l~~~~~--~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
.++|..|++..+.+.-++|...||||||.|+.-++ .....+|. .++-+++|+.-... =-.|+-+-. ...+.
T Consensus 229 ~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~-RL~esl~~~-~~~L~- 305 (753)
T TIGR01447 229 TDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAA-RLAESLRKA-VKKLA- 305 (753)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHH-HHHHH-
T ss_conf 379999999986087689987988977899999999999989864997404788668447999-999999988-63223-
Q ss_pred EEEECCHHHHHHHHCCCCCEEEECCCCH--------HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9985897898887307798699806420--------23344200011322044045310024654311567777665430
Q gi|255764515|r 78 SVITGTVKQRTKVLKTPAVLYVINFENL--------GWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 78 ~~~~g~~~~r~~~~~~~~~i~i~s~e~~--------~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.-.+.-+. +.+ .+-.+-+.|.+.+ .....+..+..++|.||||||-.+ .-.-..+.+..+..
T Consensus 306 -~~~~aid~--~~~-~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMV------dl~lm~kL~~A~~~ 375 (753)
T TIGR01447 306 -AENMAIDE--DLI-AALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMV------DLPLMAKLLKALPP 375 (753)
T ss_pred -HHCCCCCH--HHH-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHC------CHHHHHHHHHHCCC
T ss_conf -42366587--985-487204568888616614787677677778898552787060022------67999999972263
Q ss_pred CCC------EEEEECCCC
Q ss_conf 598------079965840
Q gi|255764515|r 150 ESE------RFIELTGTP 161 (458)
Q Consensus 150 ~~~------~~l~LTgTP 161 (458)
.++ .++.|=|=+
T Consensus 376 ~~k~~KLy~~~LIllGD~ 393 (753)
T TIGR01447 376 NTKDKKLYADRLILLGDK 393 (753)
T ss_pred CCCCCCHHHCCCCEECCC
T ss_conf 001320101020012267
No 146
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.35 E-value=4.5e-06 Score=55.06 Aligned_cols=135 Identities=15% Similarity=0.200 Sum_probs=71.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHH-HHHHHH------HH-HHHCCCCCCEEEEEECCHHHHHH
Q ss_conf 8099958899868999999999997-599949999160465-699999------99-98558888159998589789888
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVA-QSVWTS------EV-QRWSNFSHMNISVITGTVKQRTK 89 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~-~~~W~~------Ei-~kf~~~~~~~~~~~~g~~~~r~~ 89 (458)
++=+-+|+|+|||++=+-.+-.|+. .|-.+.+||||...+ +.+... +| ..+-....++..++.........
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~ 155 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKF 155 (985)
T ss_pred EEEEEEECCCCCEEEHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH
T ss_conf 45689832788433179999999997484559999353898744577789999998651215730268972327788750
Q ss_pred HHCCCCCEEEECCCCHHHH---HHH-------CCC-----CCCC-------CEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7307798699806420233---442-------000-----1132-------20440453100246543115677776654
Q gi|255764515|r 90 VLKTPAVLYVINFENLGWL---VQE-------LKG-----TWPF-------ATIVVDESTKLKSFRLRQGSKTARALAKP 147 (458)
Q Consensus 90 ~~~~~~~i~i~s~e~~~~~---~~~-------~~~-----~~~~-------~~iIiDEaH~lkn~~~~~~s~~~~~l~~~ 147 (458)
.-+....+++++.+++... ... ... ..+. -.+|+||-|++... .++.+++..+
T Consensus 156 ~~~~~~~vLl~~~~A~nk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-----~k~~~~i~~l 230 (985)
T COG3587 156 KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-----DKTYGAIKQL 230 (985)
T ss_pred CCCCCCEEEEEEHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHCCCEEEECCHHHCCCC-----HHHHHHHHHC
T ss_conf 14788559998413325332111331605440057420015877898742987996471003541-----3788988730
Q ss_pred HHCCCEEEEECCC
Q ss_conf 3059807996584
Q gi|255764515|r 148 AWESERFIELTGT 160 (458)
Q Consensus 148 ~~~~~~~l~LTgT 160 (458)
++-..+=-+||
T Consensus 231 --~pl~ilRfgAT 241 (985)
T COG3587 231 --NPLLILRFGAT 241 (985)
T ss_pred --CCEEEEEECCC
T ss_conf --86079995564
No 147
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=9.8e-06 Score=52.98 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHH--------HHHCCC--C
Q ss_conf 789999999996798099958899868999999999997-59994999916046569999999--------985588--8
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVAQSVWTSEV--------QRWSNF--S 73 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~~~~W~~Ei--------~kf~~~--~ 73 (458)
+.|...++.+.++.-.+...+-|+|||+.|++++..+.. ....+++++=|. ++. .+++ +|+.+. |
T Consensus 62 ~~Q~~yi~~i~~~~ivf~~GpAGTGKT~lA~a~Al~~l~~~~~~kIIltRP~--V~~--ge~lGfLPGdl~EK~~Pyl~P 137 (262)
T PRK10536 62 EAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV--LQA--DEDLGFLPGDIAEKFAPYFRP 137 (262)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC--CCC--CCCCCCCCCCHHHHHHHHHHH
T ss_conf 6499999998619839998999875899999999999985888689996678--756--766676989879988788878
Q ss_pred CCE-EEEEECCHHHHHHHHC-CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 815-9998589789888730-77986998064202334420001132204404531002465431156777766543059
Q gi|255764515|r 74 HMN-ISVITGTVKQRTKVLK-TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES 151 (458)
Q Consensus 74 ~~~-~~~~~g~~~~r~~~~~-~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~ 151 (458)
-.+ .....|.. .....+. ....+-+.+...++.. .++-..||+|||+++ ...+..-.+.++...+
T Consensus 138 i~D~L~~~lg~~-~~~~~~~~e~G~Iei~PlafmRGr------Tf~na~IIvDEaQN~------T~~qmk~iLTRiG~~S 204 (262)
T PRK10536 138 VYDVLVRRLGAS-FMQYCLRPEIGKVEIAPFAYMRGR------TFENAVVILDEAQNV------TAAQMKMFLTRLGENV 204 (262)
T ss_pred HHHHHHHHHCHH-HHHHHHHHHCCCEEEEEHHHHCCC------CCCCEEEEEEHHHCC------CHHHHHHHHHHCCCCC
T ss_conf 999999996859-999998730594899875874477------514428998412128------9999988985425996
Q ss_pred CEEEEECCCCHHHH
Q ss_conf 80799658402310
Q gi|255764515|r 152 ERFIELTGTPSPNG 165 (458)
Q Consensus 152 ~~~l~LTgTPi~n~ 165 (458)
++.+||-|-|..
T Consensus 205 --KiVi~GD~~Q~D 216 (262)
T PRK10536 205 --TVIVNGDITQCD 216 (262)
T ss_pred --EEEEECCCCCCC
T ss_conf --899968820226
No 148
>KOG0329 consensus
Probab=98.27 E-value=2.3e-05 Score=50.69 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=81.4
Q ss_pred CCCCCHHHHH-HHHHHHHH-HCCCCCEEEEECCHHHHHHHHHHHHHHCC-CCCCEEEEEECC--HHHHHHHHCCCCCEEE
Q ss_conf 8899868999-99999999-75999499991604656999999998558-888159998589--7898887307798699
Q gi|255764515|r 25 SMGSGKTVSV-LTALSYIH-LWGEKSVLVIAPLRVAQSVWTSEVQRWSN-FSHMNISVITGT--VKQRTKVLKTPAVLYV 99 (458)
Q Consensus 25 ~~G~GKT~~a-l~~~~~l~-~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~-~~~~~~~~~~g~--~~~r~~~~~~~~~i~i 99 (458)
--|.|||..- ++.+..+. ..|.-.+||+|.+.-+.-|-..|.++|.. .|..++.++.|. .+...+.+..--.+++
T Consensus 87 ksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivV 166 (387)
T KOG0329 87 KSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVV 166 (387)
T ss_pred CCCCCCEEEEEHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHCCCEEEE
T ss_conf 25788436552223552378898079999962189999988999999754888458999755310346998827990897
Q ss_pred ECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 8064202334420-001132204404531002465431156777766543059807996584
Q gi|255764515|r 100 INFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
-+...+..+.++. +....-...|+|||..+-..- ..-+-.+.+-+..+..+.++..|||
T Consensus 167 gTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l--DMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329 167 GTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL--DMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred CCCHHHHHHHHHCCCCHHHCCEEEHHHHHHHHHHH--HHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 68288999987245753203211233377899987--8888799986328653203454201
No 149
>KOG0951 consensus
Probab=98.25 E-value=8.3e-05 Score=47.35 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH----HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHC
Q ss_conf 79809995889986899999999999759994999916046569----99999998558888159998589789888730
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS----VWTSEVQRWSNFSHMNISVITGTVKQRTKVLK 92 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~----~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~ 92 (458)
|.+.+++.+.|+|||++|=-++ +......++..++|...+.. -|.. +|....++.+..++|...-..+. .
T Consensus 1159 nd~v~vga~~gsgkt~~ae~a~--l~~~~~~~~vyi~p~~~i~~~~~~~w~~---~f~~~~G~~~~~l~ge~s~dlkl-~ 1232 (1674)
T KOG0951 1159 NDNVLVGAPNGSGKTACAELAL--LRPDTIGRAVYIAPLEEIADEQYRDWEK---KFSKLLGLRIVKLTGETSLDLKL-L 1232 (1674)
T ss_pred CCEEEEECCCCCCHHHHHHHHH--CCCCCCEEEEEECCHHHHHHHHHHHHHH---HHCCCCCCEEEECCCCCCCCHHH-H
T ss_conf 6618994578873448899986--2886632799843668999999999987---53104580688517865525677-6
Q ss_pred CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCC
Q ss_conf 779869980642023344200011322044045310024
Q gi|255764515|r 93 TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKS 131 (458)
Q Consensus 93 ~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn 131 (458)
...+++|.+.+....+. ....-++.|+||.|.+..
T Consensus 1233 ~~~~vii~tpe~~d~lq----~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951 1233 QKGQVIISTPEQWDLLQ----SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred HHCCEEEECHHHHHHHH----HHHHCCEEEEEHHHHHCC
T ss_conf 42455886635777775----543211686102344146
No 150
>KOG0922 consensus
Probab=98.20 E-value=6.2e-06 Score=54.21 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=73.8
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHH-HHHHHHCCCCC--CEEEEEECC
Q ss_conf 999999679809995889986899999999999759---994999916046569999-99998558888--159998589
Q gi|255764515|r 10 IVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWG---EKSVLVIAPLRVAQSVWT-SEVQRWSNFSH--MNISVITGT 83 (458)
Q Consensus 10 ~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~---~~~~LIv~P~~l~~~~W~-~Ei~kf~~~~~--~~~~~~~g~ 83 (458)
.+..+.++.-.++..|+|+|||=|.= .+|...| .+.+-+.=|..+..-.-. +-.+......+ ..+.+-..+
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQip---QyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed 135 (674)
T KOG0922 59 ILYAVEDNQVLIVIGETGSGKSTQIP---QYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFED 135 (674)
T ss_pred HHHHHHHCCEEEEECCCCCCCCCCHH---HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 99999878779998489898533276---999862656688277506716778889999999858976762226998456
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-C-CEEEEEC
Q ss_conf 789888730779869980642023344200---0113220440453100246543115677776654305-9-8079965
Q gi|255764515|r 84 VKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-S-ERFIELT 158 (458)
Q Consensus 84 ~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~-~~~l~LT 158 (458)
... ....+..+|-.. +.++.. ...+|+.||+||||. ++-.+.-....+.++..+ . -+++++|
T Consensus 136 ~ts------~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922 136 STS------KDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred CCC------CCEEEEEECCHH---HHHHHHCCCCCCCCCEEEEECHHH----HHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 678------733699961359---999885087645444899832231----0157889999999987327783699992
Q ss_pred CCCHHHHCCCHHHHHHHCC-CCCCCC
Q ss_conf 8402310010134677517-888775
Q gi|255764515|r 159 GTPSPNGLIDLWGQIWFLD-KGKRLG 183 (458)
Q Consensus 159 gTPi~n~~~el~~ll~~l~-~~~~l~ 183 (458)
||-=....+++|+.+..+. ||..++
T Consensus 203 ATlda~kfS~yF~~a~i~~i~GR~fP 228 (674)
T KOG0922 203 ATLDAEKFSEYFNNAPILTIPGRTFP 228 (674)
T ss_pred EEECHHHHHHHHCCCCEEEECCCCCC
T ss_conf 35248999998647956766688775
No 151
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00024 Score=44.59 Aligned_cols=143 Identities=18% Similarity=0.283 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHH---HHHHHHHHHHHHCCCCCCEEE
Q ss_conf 87478999999999679809995889986899999999999759994999916046---569999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRV---AQSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l---~~~~W~~Ei~kf~~~~~~~~~ 78 (458)
-++||-.+-+.-+.-+.+.+.-+-+|=|||++|... .++..-..+++.||+..-- ....|...+-.|.. +.+.
T Consensus 78 g~r~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp-~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LG---LsvG 153 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLP-AYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLG---LSVG 153 (822)
T ss_pred CCCHHHHHHHHCHHHCCCCEEEEECCCCHHHHHHHH-HHHHHCCCCCCEEEEEHHHHHHHCHHHHHHHHHHCC---CCEE
T ss_conf 897236999612352378144554377359998899-999723899748950048774428999899998768---8232
Q ss_pred EEE--CCHHHHHHHHCCCCCEEEECCCC---H--HHHH------HHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 985--89789888730779869980642---0--2334------420001132204404531002465431156777766
Q gi|255764515|r 79 VIT--GTVKQRTKVLKTPAVLYVINFEN---L--GWLV------QELKGTWPFATIVVDESTKLKSFRLRQGSKTARALA 145 (458)
Q Consensus 79 ~~~--g~~~~r~~~~~~~~~i~i~s~e~---~--~~~~------~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~ 145 (458)
+.. -++..+...+..+ ++|.+ + ..+. .+-....+....|+||+-.+
T Consensus 154 ~~~~~m~~~ek~~aY~~D-----ItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI---------------- 212 (822)
T COG0653 154 VILAGMSPEEKRAAYACD-----ITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI---------------- 212 (822)
T ss_pred ECCCCCCHHHHHHHHHCC-----CEECCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCHHHE----------------
T ss_conf 235889867868887337-----54305500175522214320587755036883887551440----------------
Q ss_pred HHHHCCCEEEEECCCCHHHHCCCHHHH
Q ss_conf 543059807996584023100101346
Q gi|255764515|r 146 KPAWESERFIELTGTPSPNGLIDLWGQ 172 (458)
Q Consensus 146 ~~~~~~~~~l~LTgTPi~n~~~el~~l 172 (458)
+...+.--+.+|| |...+ .++|..
T Consensus 213 -LIDEARtPLiISG-~~~~~-~~~Y~~ 236 (822)
T COG0653 213 -LIDEARTPLIISG-PAEDS-SELYKK 236 (822)
T ss_pred -EEECCCCCEEEEC-CCCCC-CHHHHH
T ss_conf -0000366523216-66567-259999
No 152
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=98.12 E-value=1.6e-05 Score=51.76 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=46.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEE
Q ss_conf 09995889986899999999999759-99499991604656999999998558888159998589789888730779869
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLY 98 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~ 98 (458)
+++-.++|+|||+.++.++..+.... ......+.+..-..+.-++.+.+-. +... ...+.... -+
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~--~~~~-----------~~~~~~~~-~f 69 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDL--KVRK-----------KKLFRKPT-SF 69 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHC--CHHH-----------CCCCCCCH-HH
T ss_conf 9997779938999999999998644026820899578669999999986041--2001-----------02000725-23
Q ss_pred EECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf 9806420233442000113220440453100246
Q gi|255764515|r 99 VINFENLGWLVQELKGTWPFATIVVDESTKLKSF 132 (458)
Q Consensus 99 i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~ 132 (458)
|-+.+ ....+++.+|+||||++.+.
T Consensus 70 i~~~~---------~~~~~~dvvivDEAhRl~~k 94 (348)
T pfam09848 70 INNLH---------KAPPHEDVVIVDEAHRLWTK 94 (348)
T ss_pred HCCCC---------CCCCCCCEEEEEHHHHHHHC
T ss_conf 16523---------57986778998317866543
No 153
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.03 E-value=0.00023 Score=44.68 Aligned_cols=84 Identities=15% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCHHHHHHCCCCCEEEEHHHHHHHH---HHHHHC-----CCCC--CC-HHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 3256654124884034222367888---664100-----0265--33-44589987642458855899844221116220
Q gi|255764515|r 310 KALEVIIEKANAAPIIVAYHFNSDL---ARLQKA-----FPQG--RT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 310 ~~l~~il~~~~~~kviif~~~~~~~---~~i~~~-----~~~g--~~-~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL 378 (458)
+.+..+++...|+-.+.|+.+..+. +.+... +.+| .+ ..-+...++.|++++..||+++ .+.-||+|+
T Consensus 460 ~~l~~li~~~~Gr~LvLFTS~r~~~~~ae~l~~~l~~~~l~Qge~~~~~~l~~~~~~~f~~~~~svLfGT-~SfWEGVDv 538 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAA-GGAWTGIDL 538 (636)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCC
T ss_conf 9999999870798899704099999999999722788658745764035689999998727899689867-764066257
Q ss_pred CCC---------CCEEEEECCCCCH
Q ss_conf 017---------8599990899898
Q gi|255764515|r 379 QYG---------GNILVFFSLWWDL 394 (458)
Q Consensus 379 ~~a---------~~~iI~~~~~wn~ 394 (458)
+.. .+.||..-+|+-+
T Consensus 539 pG~~~~~~~Gd~Ls~VII~rLPF~~ 563 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 8866678877742066575699899
No 154
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=98.00 E-value=0.0001 Score=46.85 Aligned_cols=138 Identities=18% Similarity=0.136 Sum_probs=78.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHC----CCC
Q ss_conf 999588998689999999999975999499991604656999999998558888159998-589789888730----779
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI-TGTVKQRTKVLK----TPA 95 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~-~g~~~~r~~~~~----~~~ 95 (458)
++...+|+|||=.-+.+++.....| +.+|+++|.--+..||.+.+.........-++.- . +...+...|. ...
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g-~~~~~l~Pei~l~~q~~~~~~~~fg~~~~~~h~~~l-~~~~~~~~w~~~~~g~~ 78 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSALVLVPEIALTPQTLQRFKGRFGSQVAVLHSGKL-SDSEKLDAWRKVKLGEA 78 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCC-CCHHHHHHHHHHHCCCC
T ss_conf 9545678861688899999997337-717897042110167899999971872010100136-73456889999851860
Q ss_pred CEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 869980642023344200011322044045310--024654-31156777766543059807996584023100
Q gi|255764515|r 96 VLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRL-RQGSKTARALAKPAWESERFIELTGTPSPNGL 166 (458)
Q Consensus 96 ~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~-~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~ 166 (458)
.++|-+...+ +....+..++|+||-|- +|.... ..+..+--++........-.++-||||..++.
T Consensus 79 ~~v~G~rsa~------f~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p~~lgsatP~le~~ 146 (524)
T TIGR00595 79 LVVIGTRSAL------FLPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCPVVLGSATPSLESY 146 (524)
T ss_pred EEEECCCHHH------HCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 0564030343------2462114547873464521001368855206788988764048857880567227899
No 155
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.94 E-value=0.0014 Score=40.01 Aligned_cols=123 Identities=20% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160465---69999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~~ 78 (458)
+|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|..-+-.|+ ++.+.
T Consensus 92 ~mrhydVQliGgivLh~G~IAEM~TGEGKTLvAtlp-ayLnAL~GkgVHVVTVNDYLA~RDaewMg~iy~fL---GLtVg 167 (969)
T PRK12899 92 DMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMP-LYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWL---GLTTG 167 (969)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHH---CCEEE
T ss_conf 777651799989998268413551788489999999-99986459970997264365686699999999980---97785
Q ss_pred EEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHH-------CCCCCCCCEEECCCCCCC
Q ss_conf 9858--9789888730779869980642-0233442-------000113220440453100
Q gi|255764515|r 79 VITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQE-------LKGTWPFATIVVDESTKL 129 (458)
Q Consensus 79 ~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~-------~~~~~~~~~iIiDEaH~l 129 (458)
++.. ++..|...+..+ ..+.++.|. |..+.+. ..-..++...||||+-.+
T Consensus 168 ~i~~~~~~~eRr~aY~~D-ItYgTn~E~GFDYLRDN~~a~~~~~~vqR~~~faIVDEvDSI 227 (969)
T PRK12899 168 VLVSGSPLEKRKAIYQCD-VVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (969)
T ss_pred EECCCCCHHHHHHHHCCC-CEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCE
T ss_conf 638998989999986699-678788666764013764426867751777744675233120
No 156
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=97.90 E-value=0.00012 Score=46.49 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=72.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCHHHHHHHHHH-HHHHCCCCCCEEEEEECCHHHHHHHHCCCCCE
Q ss_conf 099958899868999999999997599949999-1604656999999-99855888815999858978988873077986
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVI-APLRVAQSVWTSE-VQRWSNFSHMNISVITGTVKQRTKVLKTPAVL 97 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv-~P~~l~~~~W~~E-i~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i 97 (458)
.++=.+||+|||=--|..+..........+||| |-.| +..+ +.+|....-.....+..+... . +-...+.-
T Consensus 52 ~VVRAPMGSGKTTALi~wL~~~L~~~d~SvLVVSCRRS-----FT~tL~~Rf~~aGL~gFvtY~~s~~y-i-m~~~~f~R 124 (829)
T pfam02399 52 LVVRAPMGSGKTTALIEWLRAALDSPDTSVLVVSCRRS-----FTQTLLDRFNDAGLTGFVTYLDSTDY-V-MNGRPFRR 124 (829)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHH-----HHHHHHHHHHHCCCCCCEEEEECCCE-E-ECCCCCCE
T ss_conf 89976888871899999999973786654999970167-----89999999986698651357504434-7-67875323
Q ss_pred EEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9980642023344200011322044045310024----654311567777665430598079965840
Q gi|255764515|r 98 YVINFENLGWLVQELKGTWPFATIVVDESTKLKS----FRLRQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 98 ~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn----~~~~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
.++-.|++.+....+..+ ||.+|+||.-..-+ +.-.+-.+.-..+..+-.+++++++|-||-
T Consensus 125 LiVQiESLHRV~~~ll~~--YDvLILDEVMSti~QlySpTM~~L~~VDall~~LLr~CprIIAMDAT~ 190 (829)
T pfam02399 125 LIVQIESLHRVDENLLNN--YDVLILDEVMSTIGQLYSPTMRRLKEVDALLLRLLRNCPRIIAMDATV 190 (829)
T ss_pred EEEEEECCCCCCHHHCCC--CCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 688851111388334256--677985778888887606888999999999999985498279840204
No 157
>KOG1805 consensus
Probab=97.74 E-value=0.00045 Score=42.90 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE---
Q ss_conf 87478999999999679-80999588998689999999999975999499991604656999999998558888159---
Q gi|255764515|r 2 NLAPHQTKIVDWILDHK-RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI--- 77 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~-~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~--- 77 (458)
.|..-|.+|+.+.+.-. +.++..=||+|||-+...++..|...| +++|..+=++...+.----+..|. .+.++.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~-i~~lRLG~~ 746 (1100)
T KOG1805 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFG-IYILRLGSE 746 (1100)
T ss_pred HCCHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEEEHHHHHHHHHHHHHHCCC-CCEEECCCC
T ss_conf 318899999999873033220326998981225999999999738-818998505678899999875067-110344872
Q ss_pred EEEECCHHH--------------HHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 998589789--------------8887307798699806420233442000113220440453100
Q gi|255764515|r 78 SVITGTVKQ--------------RTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g~~~~--------------r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~l 129 (458)
..++..-++ ..+.+++ -.|+.+|--.+. .-++....||.+|+|||-.+
T Consensus 747 ~kih~~v~e~~~~~~~s~ks~~~l~~~~~~-~~IVa~TClgi~---~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805 747 EKIHPDVEEFTLTNETSEKSYADLKKFLDQ-TSIVACTCLGIN---HPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---CHHHHCCCCCEEEECCCCCC
T ss_conf 224468998712344545339999997289-767999715788---65552142678998651111
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.72 E-value=0.0032 Score=37.75 Aligned_cols=123 Identities=16% Similarity=0.245 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEEE
Q ss_conf 874789999999996798099958899868999999999997599949999160465---69999999985588881599
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNIS 78 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~~ 78 (458)
.|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|...+-+|+ ++.|.
T Consensus 169 gm~hydVQliGg~~Lh~G~IAEM~TGEGKTLvatlp-~yLnAL~GkgVHvVTvNDYLA~RDaewmg~iy~fL---Gltvg 244 (1111)
T PRK12901 169 DMVHYDVQLIGGVVLHKGKIAEMATGEGKTLVATLP-VFLNALTGNGVHVVTVNDYLAKRDSEWMGPLYMFH---GLSVD 244 (1111)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH---CCEEE
T ss_conf 885655799879998268515650688579999999-99997369980898315677887599889999994---98652
Q ss_pred EEE--C-CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC------CCCCCCCEEECCCCCCC
Q ss_conf 985--8-9789888730779869980642-02334420------00113220440453100
Q gi|255764515|r 79 VIT--G-TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL------KGTWPFATIVVDESTKL 129 (458)
Q Consensus 79 ~~~--g-~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~------~~~~~~~~iIiDEaH~l 129 (458)
++. . ++..|...+..+ ..+.||.+. |..+.+.+ .-..++...||||+-.+
T Consensus 245 ~i~~~~~~~~~rr~aY~~D-ItYgTn~EfGFDYLRDnm~~~~~~~vqr~~~~aIVDEvDSI 304 (1111)
T PRK12901 245 CIDKHQPNSDARRKAYEAD-ITYGTNNEFGFDYLRDNMAVSPKDLVQRKHNYAIVDEVDSV 304 (1111)
T ss_pred EECCCCCCHHHHHHHHHCC-CEECCCCCCCHHHHHHHCCCCHHHHCCCCCCEEEEECHHHH
T ss_conf 3269999979999987378-63415654102435640157878725677765888423666
No 159
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.70 E-value=7.4e-05 Score=47.68 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCC--CEEEEECCH
Q ss_conf 98747899999999967980999588998689999999999975-999--499991604
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLW-GEK--SVLVIAPLR 56 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~-~~~--~~LIv~P~~ 56 (458)
|+|.|.|.+||.+. .+.+++.+.+|+|||-+...-+.+|... +.. .+|+|+=+.
T Consensus 1 M~Ln~~Q~~AV~~~--~gp~lVlAGaGSGKT~tLt~Ria~Li~~~~v~P~~ILalTFT~ 57 (672)
T PRK10919 1 MRLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTN 57 (672)
T ss_pred CCCCHHHHHHHCCC--CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHH
T ss_conf 99998999998399--9998999738558799999999999866898933385442179
No 160
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=97.69 E-value=0.0019 Score=39.07 Aligned_cols=124 Identities=22% Similarity=0.369 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHHHHHHHCCCCCCEE
Q ss_conf 98747899999999967980999588998689999999999975999499991604---656999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLR---VAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~---l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
+.|+||-.+-+--+.=|.+.+-=+=||=||||+|... ++|+.=..++|=||+=.= ---..|...+-+|+ ++.|
T Consensus 57 lG~r~fDVQliGg~~LH~G~IAEMkTGEGKTL~AtLp-aYLNAL~GkGVHvVTVNdYLA~RD~e~m~~v~~FL---GL~V 132 (904)
T TIGR00963 57 LGLRPFDVQLIGGIVLHKGKIAEMKTGEGKTLVATLP-AYLNALTGKGVHVVTVNDYLARRDAEWMGQVYRFL---GLSV 132 (904)
T ss_pred HCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHC---CCEE
T ss_conf 3785618999999998089667831488628999999-99876517962799635044488899878999684---9368
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC------CCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-02334420------00113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL------KGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~------~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++.+|...+..+ ..+.||-|. |..+.+.. .-..+|...||||.=.+
T Consensus 133 Gl~~~~m~~~eRr~aY~cD-ITY~TNnELGFDYLRDNM~~~~ee~vqR~f~FAIIDEVDSI 192 (904)
T TIGR00963 133 GLILSSMSPEERREAYACD-ITYGTNNELGFDYLRDNMALSKEEKVQRPFNFAIIDEVDSI 192 (904)
T ss_pred EEECCCCCHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEEECCE
T ss_conf 8861799858999985498-16532654202466676411501210167222688642446
No 161
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=97.69 E-value=0.0012 Score=40.23 Aligned_cols=121 Identities=14% Similarity=-0.003 Sum_probs=63.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC------CCCCEEEE-ECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
Q ss_conf 980999588998689999999999975------99949999-16046569999999985588881599985897898887
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLW------GEKSVLVI-APLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKV 90 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~------~~~~~LIv-~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~ 90 (458)
++.+|..|.|-|||..+=-+... +-. ...|+++| +|.+.-+...+..|-.-...|... +++.....
T Consensus 62 p~lLlvGdsnnGKT~Iv~rF~~~-hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~----~~~~~~~~-- 134 (302)
T pfam05621 62 PNLLLVGPTNNGKSMIVEKFRRA-HPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRP----RPRLPEME-- 134 (302)
T ss_pred CCEEEEECCCCCHHHHHHHHHHH-CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC----CCCHHHHH--
T ss_conf 75588707988789999999996-799878666702189997699988689999999983787788----87789999--
Q ss_pred HCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 30779869980642023344200011322044045310024654311567777665430598079965840
Q gi|255764515|r 91 LKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 91 ~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
.....++....-.++||||.|++-......-.....++..++...+--+.+-||+
T Consensus 135 ----------------~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt~ 189 (302)
T pfam05621 135 ----------------QLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTR 189 (302)
T ss_pred ----------------HHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf ----------------9999999974987899854365604868899999999999863658786995319
No 162
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.68 E-value=0.0005 Score=42.64 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=18.8
Q ss_pred HHHHHHCCC--EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999996798--0999588998689999999999
Q gi|255764515|r 11 VDWILDHKR--CAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 11 v~~~~~~~~--~ll~~~~G~GKT~~al~~~~~l 41 (458)
+.+.+..++ +++..|+|+|||...=.++..+
T Consensus 35 L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l 67 (269)
T TIGR03015 35 LEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 999996489659997299898899999999845
No 163
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00012 Score=46.36 Aligned_cols=174 Identities=23% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHH-HHH-CCCEEEEECCCCC--HHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 874789999999-996-7980999588998--6899999999999759-9949999160465699999999855888815
Q gi|255764515|r 2 NLAPHQTKIVDW-ILD-HKRCAIWASMGSG--KTVSVLTALSYIHLWG-EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~~-~~~-~~~~ll~~~~G~G--KT~~al~~~~~l~~~~-~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
.+.|+|...... +.. ..+..++++.|.| ||+.+..........+ ..+.++++|..+. .+|..|...+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~- 161 (866)
T COG0553 84 ILIPHQLDIALEVLNELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLR-AQWVVELLEKFNIRLA- 161 (866)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCCHH-
T ss_conf 21322036777766543034444310143333303332356666655543201103640245-5677877764155367-
Q ss_pred EEEEECCHHHHHHHHCC-----CCCEEEECCCCHHHH---HHHCCCCCCC---CEEECCCCCCCCCCCC-----CCHHHH
Q ss_conf 99985897898887307-----798699806420233---4420001132---2044045310024654-----311567
Q gi|255764515|r 77 ISVITGTVKQRTKVLKT-----PAVLYVINFENLGWL---VQELKGTWPF---ATIVVDESTKLKSFRL-----RQGSKT 140 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~-----~~~i~i~s~e~~~~~---~~~~~~~~~~---~~iIiDEaH~lkn~~~-----~~~s~~ 140 (458)
+....+.. .....+.. .....+++.+..... .........| +++++||+|.+.+... ......
T Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (866)
T COG0553 162 VLDKEGLR-YLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETLE 240 (866)
T ss_pred HHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf 77542224-44320122343222102444323676542000133202210023555405776412342111100245678
Q ss_pred HHHHHHHHHCCC------EEEEECCCCHHHHCCCHHHHHHHCCC
Q ss_conf 777665430598------07996584023100101346775178
Q gi|255764515|r 141 ARALAKPAWESE------RFIELTGTPSPNGLIDLWGQIWFLDK 178 (458)
Q Consensus 141 ~~~l~~~~~~~~------~~l~LTgTPi~n~~~el~~ll~~l~~ 178 (458)
.........+.. ....+++||......+.++...+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (866)
T COG0553 241 YELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDP 284 (866)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 88866566404431122214441000433020000113201131
No 164
>KOG0920 consensus
Probab=97.65 E-value=0.001 Score=40.80 Aligned_cols=148 Identities=18% Similarity=0.093 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCCEEEEE--CCH--HHH-HHHHHHHHHHCCCCC--C
Q ss_conf 478999999999679809995889986899999999-99975999499991--604--656-999999998558888--1
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS-YIHLWGEKSVLVIA--PLR--VAQ-SVWTSEVQRWSNFSH--M 75 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~~~LIv~--P~~--l~~-~~W~~Ei~kf~~~~~--~ 75 (458)
+.++...++.+.++.-.++..++|.|||-|+--++. .....+ ...=||| |.. .+. ..+.. -++. ...+ .
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKtTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa-~ER~-~~~g~~V 251 (924)
T KOG0920 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVA-KERG-ESLGEEV 251 (924)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHHHH-HHHC-CCCCCEE
T ss_conf 7789999999974966999578898712246699999998628-99738866775177899999998-8754-6668713
Q ss_pred EEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 59998589789888730779869980642023344200011322044045310024654311567777665430598079
Q gi|255764515|r 76 NISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI 155 (458)
Q Consensus 76 ~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l 155 (458)
.+.+-......+ ...+..+|...+-..............||+||.|.= +..+.--=-..+.+.... ..-+++
T Consensus 252 GYqvrl~~~~s~------~t~L~fcTtGvLLr~L~~~~~l~~~thiivDEVHER-~i~~DflLi~lk~lL~~~-p~LkvI 323 (924)
T KOG0920 252 GYQVRLESKRSR------ETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHER-SINTDFLLILLKDLLPRN-PDLKVI 323 (924)
T ss_pred EEEEEEECCCCC------CEEEEEECHHHHHHHHCCCCCCCCCCEEEEEEEEEC-CCCCCCHHHHHHHHHHHC-CCCEEE
T ss_conf 689862013677------516898406899987546862145866544227971-677521799999886228-885699
Q ss_pred EECCCCH
Q ss_conf 9658402
Q gi|255764515|r 156 ELTGTPS 162 (458)
Q Consensus 156 ~LTgTPi 162 (458)
+||||--
T Consensus 324 LMSAT~d 330 (924)
T KOG0920 324 LMSATLD 330 (924)
T ss_pred EEEEECC
T ss_conf 8621126
No 165
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=97.65 E-value=9.6e-05 Score=46.98 Aligned_cols=105 Identities=9% Similarity=0.047 Sum_probs=60.6
Q ss_pred CCCHHHHHHCCCC-----CEEEEHHHH----HHHHHHHHHCCCCC---------CCHHHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf 3325665412488-----403422236----78886641000265---------33445899876424588558998442
Q gi|255764515|r 309 IKALEVIIEKANA-----APIIVAYHF----NSDLARLQKAFPQG---------RTLDKDPCTIQEWNEGKIPLLFAHPA 370 (458)
Q Consensus 309 ~~~l~~il~~~~~-----~kviif~~~----~~~~~~i~~~~~~g---------~~~~~r~~~i~~f~~~~~~vli~s~~ 370 (458)
+++++++.++... .-|+||-.- ...++.|.+.-..+ -|..|+++ =|+.+..+.+|+||.
T Consensus 281 ~~AvdEL~~e~~~eGkGPGDiLIFlpGEREIRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~R---vF~pHsGRRIVLaTN 357 (1320)
T TIGR01967 281 LAAVDELVAEGPDEGKGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQR---VFQPHSGRRIVLATN 357 (1320)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHCCHHHCCC---CCCCCCCCEEEEECC
T ss_conf 99999997427555789972676378886368999998446878704405522158644744---006859623453301
Q ss_pred HCCCCCCCCCCCCEEEEECCC--------------------CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEEECC
Q ss_conf 211162200178599990899--------------------898686445666620220203787752899998589
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLW--------------------WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 427 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~--------------------wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~ 427 (458)
++.+.|+-. +-++|| |+- =|=+.-.||.||| -|.+ +=.+++|-+++
T Consensus 358 VAETSLTVP-GI~YVI--DtGtARiSRYS~RTKVQRLPIEpISQASANQRkGRC-----GRV~---~GICIRLYSE~ 423 (1320)
T TIGR01967 358 VAETSLTVP-GIRYVI--DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRC-----GRVA---PGICIRLYSEE 423 (1320)
T ss_pred HHHHHCCCC-CCCCEE--CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC-----CCCC---CCEEEECCCHH
T ss_conf 013305788-711135--688532000100330133676603122320068875-----4147---77047557757
No 166
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.64 E-value=0.0017 Score=39.44 Aligned_cols=124 Identities=20% Similarity=0.343 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---HHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996798099958899868999999999997599949999160465---6999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA---QSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~---~~~W~~Ei~kf~~~~~~~~ 77 (458)
|-|+||-.+-+--+.-+.+.+--+.+|=|||++|... .+|..-..+++-||+..--+ -..|...+-.|+ ++.|
T Consensus 82 lg~r~ydvQliGg~~Lh~G~iaEM~TGEGKTL~atlp-~ylnAL~GkgvHvvTvNdYLA~RDae~m~~vy~fL---Gltv 157 (946)
T PRK12902 82 LGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLP-SYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFL---GLSV 157 (946)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 4897557999989998468413541788479999999-99986559970997265265686799999999981---9778
Q ss_pred EEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC------CCCCCCCEEECCCCCCC
Q ss_conf 99858--9789888730779869980642-02334420------00113220440453100
Q gi|255764515|r 78 SVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL------KGTWPFATIVVDESTKL 129 (458)
Q Consensus 78 ~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~------~~~~~~~~iIiDEaH~l 129 (458)
.++.. ++..|...+..+ ..+.+|.|. |..+.+.. .-..++...||||+-.+
T Consensus 158 g~i~~~~~~~er~~aY~~D-ItY~Tn~E~gFDYLRDnm~~~~~~~vqr~~~~aIvDEvDSi 217 (946)
T PRK12902 158 GLIQQDMSPEERKKNYACD-ITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (946)
T ss_pred EEECCCCCHHHHHHHHCCC-CEEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECHHHH
T ss_conf 3548998989999985898-27978887577235304478868843879965898542566
No 167
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.63 E-value=0.00034 Score=43.63 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH---HHH-----H----CCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 987478999999999679809995889986899999999---999-----7----5999499991604656999999998
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALS---YIH-----L----WGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~---~l~-----~----~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
++|-.-|.+|+..+.+++=.+|-..||+|||=+.=++++ .+. . ....+++.=||+.-.. -=-.|+
T Consensus 349 ~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAA-kRl~E~-- 425 (769)
T TIGR01448 349 LKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAA-KRLAEV-- 425 (769)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHH-HHCCCC--
T ss_conf 77068899999998609489985778886168999999999871687755312456776488737743788-851100--
Q ss_pred HCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 55888815999858978988873077986998064202334420001132204404531002465431156777766543
Q gi|255764515|r 69 WSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA 148 (458)
Q Consensus 69 f~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~ 148 (458)
|+.+...++-+-|. .. +. ....+.+....+.|+|||||+-.+ ..--..+.+..+.
T Consensus 426 -TG~~a~TIHRLlG~--------~~---------~~-~~~~k~~~~~~~~DL~IvDE~SM~------Dt~L~~~lL~a~P 480 (769)
T TIGR01448 426 -TGLEALTIHRLLGY--------GS---------DT-KSENKNLEDPIDADLLIVDESSMV------DTWLASSLLAAVP 480 (769)
T ss_pred -CCCHHHHHHHHHCC--------CC---------CC-CCCCHHHCCCCCCCEEEEECCCHH------HHHHHHHHHHHCC
T ss_conf -26212347786368--------98---------88-732110113478776998146218------8999999986179
Q ss_pred HCCCEEEEECCC
Q ss_conf 059807996584
Q gi|255764515|r 149 WESERFIELTGT 160 (458)
Q Consensus 149 ~~~~~~l~LTgT 160 (458)
..| +++|=|=
T Consensus 481 ~~a--~lllVGD 490 (769)
T TIGR01448 481 DHA--RLLLVGD 490 (769)
T ss_pred CCC--EEEEECC
T ss_conf 777--7988837
No 168
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.63 E-value=0.00015 Score=45.82 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 98099958899868999999999997
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHL 43 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~ 43 (458)
+..++..++|+|||-.|.+++..+.-
T Consensus 37 phlLf~GPpG~GKTt~A~~lA~~l~~ 62 (337)
T PRK12402 37 PHLVVYGPSGSGKTAAVRALARELYG 62 (337)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 76988892984899999999999679
No 169
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00055 Score=42.39 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 9874789999999996798----099958899868999999999997599949999160465699999999855888815
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
..|||||...-+.+.+.+| .|+..+.|+||+-.|..++..+.=...... -|... ...+.++....+.+
T Consensus 2 ~~~yPW~~~~w~~l~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~---~~Cg~-----C~sC~~~~~~~HPD 73 (328)
T PRK05707 2 AEIYPWQQSLWQQLAGRGRHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGG---GACGS-----CKGCQLLAAGSHPD 73 (328)
T ss_pred CCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC---CCCCC-----CHHHHHHHCCCCCC
T ss_conf 86766748999999977982204644799986799999999999848999998---99988-----88999987589998
Q ss_pred EEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCC
Q ss_conf 99985897898887307798699806420233442000---113220440453100
Q gi|255764515|r 77 ISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKL 129 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~l 129 (458)
++.+.-....+ .+..+.++.+.+.... .-.|..+|||+||.+
T Consensus 74 ~~~i~pe~~~~-----------~I~IdqIR~l~~~~~~~~~~g~~KV~iI~~Ae~m 118 (328)
T PRK05707 74 NFVLEPEEADK-----------PIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAM 118 (328)
T ss_pred EEEEECCCCCC-----------CCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHH
T ss_conf 79984266677-----------6979999999999831766789579995028773
No 170
>KOG0924 consensus
Probab=97.59 E-value=0.00049 Score=42.70 Aligned_cols=143 Identities=20% Similarity=0.172 Sum_probs=62.8
Q ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEE--CCHHHHH----HHHHHHHHHCCCCCCEEEEEECCH
Q ss_conf 99996798099958899868999999999997599-9499991--6046569----999999985588881599985897
Q gi|255764515|r 12 DWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGE-KSVLVIA--PLRVAQS----VWTSEVQRWSNFSHMNISVITGTV 84 (458)
Q Consensus 12 ~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~-~~~LIv~--P~~l~~~----~W~~Ei~kf~~~~~~~~~~~~g~~ 84 (458)
..+.+|.-.++..|+|+|||-| +..+|...|- ..-+|.| |..+..- --.+|..- .-...+.+.+-..+-
T Consensus 366 ~~ir~n~vvvivgETGSGKTTQ---l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~-~lG~~VGYsIRFEdv 441 (1042)
T KOG0924 366 SVIRENQVVVIVGETGSGKTTQ---LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGV-TLGDTVGYSIRFEDV 441 (1042)
T ss_pred HHHHHCCEEEEEECCCCCCHHH---HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEEEC
T ss_conf 9986385799993588985016---679998622455871543572278999999999998587-645311248885204
Q ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCEEEEECC
Q ss_conf 89888730779869980642023344200---01132204404531002465431156777766543--05980799658
Q gi|255764515|r 85 KQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA--WESERFIELTG 159 (458)
Q Consensus 85 ~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~--~~~~~~l~LTg 159 (458)
...-.++-|=+-.-+.++.+ ...+|..||+||||.= +-...-.+..+..+- ...-+.+..||
T Consensus 442 ---------T~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHER----slNtDilfGllk~~larRrdlKliVtSA 508 (1042)
T KOG0924 442 ---------TSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHER----SLNTDILFGLLKKVLARRRDLKLIVTSA 508 (1042)
T ss_pred ---------CCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEECHHHHC----CCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf ---------787605787423057797763300444017885114330----3005899999999987422635997622
Q ss_pred CCHHHHCCCHHH
Q ss_conf 402310010134
Q gi|255764515|r 160 TPSPNGLIDLWG 171 (458)
Q Consensus 160 TPi~n~~~el~~ 171 (458)
|.-.....++|+
T Consensus 509 Tm~a~kf~nfFg 520 (1042)
T KOG0924 509 TMDAQKFSNFFG 520 (1042)
T ss_pred CCCHHHHHHHHC
T ss_conf 024899988727
No 171
>KOG0989 consensus
Probab=97.58 E-value=0.00023 Score=44.67 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH------CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999996------798099958899868999999999997
Q gi|255764515|r 6 HQTKIVDWILD------HKRCAIWASMGSGKTVSVLTALSYIHL 43 (458)
Q Consensus 6 ~Q~~~v~~~~~------~~~~ll~~~~G~GKT~~al~~~~~l~~ 43 (458)
.|...|..+.+ .+..|+..++|+|||-+|++++..|.-
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 15999999999986068860786689998676899999998557
No 172
>pfam05876 Terminase_GpA Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.
Probab=97.57 E-value=0.0011 Score=40.52 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH-HHH-HCCCCCCEE
Q ss_conf 8747899999999967--980999588998689999999999975999499991604656999999-998-558888159
Q gi|255764515|r 2 NLAPHQTKIVDWILDH--KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSE-VQR-WSNFSHMNI 77 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~--~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~E-i~k-f~~~~~~~~ 77 (458)
+..|||.+..+.+-+. ....+.-..-+|||-..+.++.+.......++|+|.|+.-....|.++ |.. +...|.+.-
T Consensus 16 ~~~Py~~eimd~l~~~~v~~V~~~k~aQ~GkT~~~~n~igy~i~~~P~p~l~v~Pt~~~a~~~s~~rl~Pmi~~sP~L~~ 95 (552)
T pfam05876 16 DRTPYLREIMDALSPPSVERVVFMKSAQVGKTELLLNWIGYFIDHDPAPMLVVQPTDDDAKRFSKDRLDPMIRASPALRE 95 (552)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 88807699998548878449999957870388999999988663089887999418999999999989999861989997
Q ss_pred EEEECCHH-----HHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-C
Q ss_conf 99858978-----98887307798699806420233442000113220440453100246543115677776654305-9
Q gi|255764515|r 78 SVITGTVK-----QRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-S 151 (458)
Q Consensus 78 ~~~~g~~~-----~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~ 151 (458)
.+.....+ ...+.+.+ ..+.++.-.+...+ ...+...+++||.-.+-..-+..++-...+..+.... .
T Consensus 96 ~~~~~~~r~~~nt~~~K~f~g-g~l~~~ga~S~~~L-----~s~~~r~l~~DEvD~~~~~~~~eGdP~~La~~R~~tf~~ 169 (552)
T pfam05876 96 RLAPARSRDSDNTLLSKRFPG-GSLLLIGANSPANL-----RSRPVRYVILDEVDAYPEDVDGEGDPISLAEKRTETFGS 169 (552)
T ss_pred HHCCCCCCCCCCCEEEEEECC-CEEEEEECCCCHHH-----HCCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 507555656677412476078-37999557996143-----048635588513443654567787989999999875302
Q ss_pred CEEEEECCCCHHHH
Q ss_conf 80799658402310
Q gi|255764515|r 152 ERFIELTGTPSPNG 165 (458)
Q Consensus 152 ~~~l~LTgTPi~n~ 165 (458)
.++++++.||..-.
T Consensus 170 ~~K~~~~STPt~~g 183 (552)
T pfam05876 170 RRKILAGSTPTIKG 183 (552)
T ss_pred CCEEEEECCCCCCC
T ss_conf 85799983899999
No 173
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.53 E-value=0.0027 Score=38.16 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
+..++..++|+|||-.|.+++..+.
T Consensus 38 phlLf~GppG~GKTt~a~~la~~l~ 62 (318)
T PRK00440 38 PHLLFAGPPGTGKTTAALALARELY 62 (318)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6698889599889999999999976
No 174
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.50 E-value=0.0012 Score=40.36 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=58.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.|+..+.|+|||-+|-.++..++-.... -.-|.+...+ ..+| .....+++.-+.+.+....+.
T Consensus 41 yLf~GprG~GKTs~Ari~akalnc~~~~---~~~pC~~C~~--C~~i---~~g~~~Dv~Eidaas~~gvd~--------- 103 (541)
T PRK05563 41 YLFCGTRGTGKTSTAKIFAKAVNCLNPQ---DGEPCNECEI--CKKI---NEGLLMDVIEIDAASNNGVDD--------- 103 (541)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC---CCCCCCCCHH--HHHH---HCCCCCCEEEECCCCCCCHHH---------
T ss_conf 5303879958999999999995799988---8985751488--9998---568988736624444478899---------
Q ss_pred ECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCC
Q ss_conf 8064202334420---00113220440453100246543115677776654305-98079965840
Q gi|255764515|r 100 INFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIELTGTP 161 (458)
Q Consensus 100 ~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgTP 161 (458)
++.+.+.. -...+|...|+||+|.+. ..++.++.+.-.. +.++++.-||.
T Consensus 104 -----iR~~~~~~~~~p~~~~~Kv~IiDEvhmls-------~~a~nallKtlEePp~~~~Filatt 157 (541)
T PRK05563 104 -----IREIIENVKYPPQEGKYKVYIMDEVHMLS-------QGAVNAFLKTLEEPPSNVIFILATT 157 (541)
T ss_pred -----HHHHHHHCEECCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf -----99999761048767870599997723389-------9999999999854877756999769
No 175
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=97.48 E-value=0.0014 Score=39.92 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=68.7
Q ss_pred CCCCHH--HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH---HHHHHHHHHHCCCCCC
Q ss_conf 987478--99999999967980999588998689999999999975999499991604656---9999999985588881
Q gi|255764515|r 1 MNLAPH--QTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ---SVWTSEVQRWSNFSHM 75 (458)
Q Consensus 1 ~~L~p~--Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~---~~W~~Ei~kf~~~~~~ 75 (458)
+.|+|| |..+.--+ +.+.+.-+.+|=|||++|... .++..-..+++=||+...-+. ..|...+-+|. ++
T Consensus 74 lg~r~ydvQl~ggi~L--~~G~IaEM~TGEGKTL~atl~-a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~L---GL 147 (381)
T pfam07517 74 LGMRHYDVQLIGGLVL--HEGKIAEMKTGEGKTLTATLP-AYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFL---GL 147 (381)
T ss_pred HCCCCCCHHHHHHHHH--CCCCEEEEECCCCCHHHHHHH-HHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH---CC
T ss_conf 4882452699989997--048725887699811999999-99997379974899758888688999979999984---86
Q ss_pred EEEEEEC--CHHHHHHHHCCCCCEEEECCCC-HHHHHHHC------CCCCCCCEEECCCCCCC
Q ss_conf 5999858--9789888730779869980642-02334420------00113220440453100
Q gi|255764515|r 76 NISVITG--TVKQRTKVLKTPAVLYVINFEN-LGWLVQEL------KGTWPFATIVVDESTKL 129 (458)
Q Consensus 76 ~~~~~~g--~~~~r~~~~~~~~~i~i~s~e~-~~~~~~~~------~~~~~~~~iIiDEaH~l 129 (458)
.|.++.. ++..|...+..+ .++.++.+. +..+.+.+ .-..+++..||||+-.+
T Consensus 148 svg~i~~~~~~~err~aY~~D-ItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSi 209 (381)
T pfam07517 148 SVGVITSDMSPEERREAYNCD-ITYGTNSELGFDYLRDNMALSKEDKVQRGLNFAIVDEVDSI 209 (381)
T ss_pred EEEECCCCCCHHHHHHHHHCC-CEECCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCHH
T ss_conf 054227889848889875166-05503223214453234415825434577776999745112
No 176
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.0026 Score=38.29 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=51.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEE
Q ss_conf 099958899868999999999997-5999499991604656999999998558888159998589789888730779869
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLY 98 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~ 98 (458)
.|+..+.|+|||-+|.+++..+.- .+...- |.+. ...+.......+.++..+........
T Consensus 41 YLFsGPrGvGKTTlArifAkaLnC~~~~~~d----pCg~-----C~sC~~I~~g~h~DviEIdaasn~gI---------- 101 (613)
T PRK05896 41 YIFSGPRGIGKTSIAKIFAKAINCLNPKDGD----CCNS-----CSVCESINTNQSVDIVELDAASNNGV---------- 101 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCC----CCCC-----CHHHHHHHCCCCCCEEEEECCCCCCH----------
T ss_conf 7755899848899999999996699999999----8888-----87899985699998688406555788----------
Q ss_pred EECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Q ss_conf 98064202334420---00113220440453100246543115677776654305-980799
Q gi|255764515|r 99 VINFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIE 156 (458)
Q Consensus 99 i~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~ 156 (458)
+.++.+.+.. -...+|..+|+||||.+. ..++.++.+.-.. +++.++
T Consensus 102 ----DeIReLie~~~~~P~~gkyKV~IIDEah~Ln-------~~AaNALLKtLEEPP~~viF 152 (613)
T PRK05896 102 ----DEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-------TSAWNALLKTLEEPPKHVVF 152 (613)
T ss_pred ----HHHHHHHHHHCCCCCCCCCEEEEECCHHHCC-------HHHHHHHHHHCCCCCCCCEE
T ss_conf ----9999999970858757994599981622179-------99999999853489878379
No 177
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0014 Score=39.98 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHH---HCC---C-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 87478999999999---679---8-0999588998689999999999975999499991604656999999998558888
Q gi|255764515|r 2 NLAPHQTKIVDWIL---DHK---R-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~---~~~---~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
-+.|||..+.+.+. +.+ . .|+..+.|+||+-.|.+++..+.-.+..+. .|..+ . ++ + ....+
T Consensus 4 ~~~PWq~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~--~~~~~--~-~~---i---~~g~H 72 (319)
T PRK08769 4 AFSPWQQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPA--LAQRT--R-QL---I---AAGTH 72 (319)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC--CCCHH--H-HH---H---HCCCC
T ss_conf 5587768999999999976994206875899987899999999999837997976--54338--8-99---9---66899
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-
Q ss_conf 1599985897898887307798699806420233442000---113220440453100246543115677776654305-
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE- 150 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~- 150 (458)
.++.++.-......+... .-++.+.++.+.+.... .-+|..+||||||.+ | .....++.|.-..
T Consensus 73 PD~~~i~~~~~~~~~k~k-----~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~m-n------~~AaNalLK~LEEP 140 (319)
T PRK08769 73 PDLQLVSFIPNRTGDKLR-----TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-N------RSACNALLKTLEEP 140 (319)
T ss_pred CCEEEEECCCCCCCCCCC-----CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC-C------HHHHHHHHHHHCCC
T ss_conf 896877534444543112-----34869999999999613720279569998066752-8------99999999982279
Q ss_pred CC-EEEEECCC
Q ss_conf 98-07996584
Q gi|255764515|r 151 SE-RFIELTGT 160 (458)
Q Consensus 151 ~~-~~l~LTgT 160 (458)
+. .+++|..+
T Consensus 141 p~~~~~iL~~~ 151 (319)
T PRK08769 141 SPGRYLWLISA 151 (319)
T ss_pred CCCEEEEEEEC
T ss_conf 98848999869
No 178
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.27 E-value=0.0038 Score=37.30 Aligned_cols=120 Identities=19% Similarity=0.165 Sum_probs=56.6
Q ss_pred HHHHHHHH---HHCC---C-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999999---9679---8-099958899868999999999997599949999160465699999999855888815999
Q gi|255764515|r 7 QTKIVDWI---LDHK---R-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 7 Q~~~v~~~---~~~~---~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
|..++..+ +..+ . .|+..+-|+|||-+|.+++..|.-...... -|.....+ +.......+.++.-
T Consensus 19 Qe~iv~~L~nAi~~~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~---~PCg~C~s-----C~~i~~g~hpDViE 90 (523)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSS---TPCGTCAQ-----CQAALEGRHIDIIE 90 (523)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCCHH-----HHHHHCCCCCCEEE
T ss_conf 49999999999985996715875789986889999999999759999998---98887888-----99986489998551
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEE
Q ss_conf 858978988873077986998064202334420---00113220440453100246543115677776654305-98079
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFI 155 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l 155 (458)
+.+.+....+ .++.+.+.. -..-+|..+|+||||.+. ..++.++.+.-.. ..+++
T Consensus 91 iDaasn~gID--------------~IReLie~~~~~P~~gryKV~IIDEah~Lt-------~~A~NALLKTLEEPP~~vv 149 (523)
T PRK08451 91 MDAASNRGID--------------DIRNLIEQTKYKPSMARFKIFIIDEVHMLT-------KEAFNALLKTLEEPPSYVK 149 (523)
T ss_pred ECCCCCCCHH--------------HHHHHHHHHCCCCCCCCEEEEEEECCCCCC-------HHHHHHHHHHCCCCCCCCE
T ss_conf 0553336899--------------999999972358867972799982603048-------9999999997038987837
No 179
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.0038 Score=37.31 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=56.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
+|+..+-|+|||..|.+++..|.=.+... .|.... ..+.+.....+.++..+.-....
T Consensus 42 yLF~Gp~G~Gk~~~A~~~A~~l~C~~~~~----~~cg~C-----~~C~~i~~g~hpDv~~i~p~~~~------------- 99 (395)
T PRK07940 42 WLFTGPPGSGRSNAARAFAAALQCTDPGV----PGCGEC-----RACRTVLAGTHPDVRVVVPEGLS------------- 99 (395)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCC-----HHHHHHHCCCCCCEEEEECCCCC-------------
T ss_conf 76368998788999999999966999999----999878-----78999876899871898268776-------------
Q ss_pred ECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEE-EEECCC
Q ss_conf 80642023344200---0113220440453100246543115677776654305-9807-996584
Q gi|255764515|r 100 INFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERF-IELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~-l~LTgT 160 (458)
+..+.++.+.+... ..-+|..+||||||++ | ....+++.|.-.- .++. ++|.+|
T Consensus 100 i~id~iR~l~~~~~~~p~~~~~kv~ii~~a~~m-~------~~a~NalLKtLEEPp~~~~fiL~t~ 158 (395)
T PRK07940 100 IGVDEVREIVQIAARRPTTGRWRIVVIEDADRL-T------ERAANALLKAVEEPPPRTVWLLCAP 158 (395)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHH-C------HHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 889999999999852730379559998077874-8------9999999985217888869998739
No 180
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0045 Score=36.87 Aligned_cols=111 Identities=14% Similarity=0.234 Sum_probs=54.0
Q ss_pred HHHHHHHHH---HCCC----EEEEECCCCCHHHHHHHHHHHHHHCCC---CCE--EEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999---6798----099958899868999999999997599---949--9991604656999999998558888
Q gi|255764515|r 7 QTKIVDWIL---DHKR----CAIWASMGSGKTVSVLTALSYIHLWGE---KSV--LVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 7 Q~~~v~~~~---~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~---~~~--LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
|..++..+. ..++ .|+..+.|+|||-.|..++..+...+. .+. .-.+|.+. .|. .+. ...+
T Consensus 28 q~~~~~~L~~a~~~gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~---~~r-~i~---~g~h 100 (352)
T PRK09112 28 HEEARAFLAQAYREGRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASP---LWR-QIA---QGAH 100 (352)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH---HHH-HHH---CCCC
T ss_conf 699999999999849965246535899808999999999998669986668655678887877---899-997---4899
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCC
Q ss_conf 159998589789888730779869980642023344200---0113220440453100
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKL 129 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~l 129 (458)
.++..+.-....+..... -.++.+.++.+.+.+. ..-.|..+||||||.+
T Consensus 101 pdl~~i~r~~d~k~~~~~-----~~I~vd~iR~l~~~~~~~~~~~~~kv~Iid~ad~m 153 (352)
T PRK09112 101 PNLLHLTRPFDEKTGKFK-----TAITVDEIRRVTHFLSQTSGDGNWRIVIIDPADDM 153 (352)
T ss_pred CCEEEEECCCCHHHHHHH-----CCCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHH
T ss_conf 995655343220214543-----35777999999998454886688069998187874
No 181
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0045 Score=36.86 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=51.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.|+..+-|+|||-+|..++..+.-... +. --|.+...+ +.......+.++.-+...+....
T Consensus 41 yLF~GprGtGKts~Ari~AkaLnC~~~-~~--~~pC~~C~~-----C~~i~~g~~~DviEiDaasn~gV----------- 101 (563)
T PRK06674 41 YLFSGPRGTGKTSIAKVFAKAVNCEHA-PV--AEPCNECPS-----CLGITNGSISDVLEIDAASNNGV----------- 101 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC-CC--CCCCCCCHH-----HHHHHCCCCCCEEEECCCCCCCH-----------
T ss_conf 431289986899999999998579999-99--887766878-----99985589987798525555787-----------
Q ss_pred ECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 8064202334420---00113220440453100246543115677776654305-9807996584
Q gi|255764515|r 100 INFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgT 160 (458)
+.++.+.+.. -...+|..+|+||+|.+.+ .++.++.+.-.. ..++++.=+|
T Consensus 102 ---d~IR~i~~~v~~~P~~~~yKV~IIDeah~Lt~-------~A~NALLKtLEEPP~~viFILaT 156 (563)
T PRK06674 102 ---DEIRDIRDKVKFAPSAVEYKVYIIDEVHMLSI-------GAFNALLKTLEEPPGHVIFILAT 156 (563)
T ss_pred ---HHHHHHHHHHCCCCCCCCEEEEEEECHHHCCH-------HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf ---99999999826488678737999854563799-------99999999863887564999965
No 182
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.25 E-value=0.0096 Score=34.86 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798-0999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
.|-+-|.+|+.++...++ +++..--|+|||.+. .++...+.....+|+=.+|++... +++++= .++....+
T Consensus 346 ~Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKStmL-~aAReawEa~GyrV~GaALsGkAA----egLe~~---sGI~SrTl 417 (992)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAA----ENLEGG---SGIASRTI 417 (992)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHHHHHCCCEEEEECCCHHHH----HHHHHC---CCCCCHHH
T ss_conf 8799999999986478975899833888788999-999999997798898115006899----976534---79431679
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 58978988873077986998064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
.+ -...|. .........+.+|||||-.+- +.+..+.+ +...++.-++.|.|-
T Consensus 418 As----~e~~w~-----------------~g~~~L~~~dVlVVDEAGMVg------SRqMarll-~~Ae~AGAKVVLVGD 469 (992)
T PRK13889 418 AS----LEHGWG-----------------QGRDLLTARDVLVIDEAGMVG------TRQLERVL-SHAADAGAKVVLVGD 469 (992)
T ss_pred HH----HHHHHH-----------------CCCCCCCCCCEEEEECCCCCC------HHHHHHHH-HHHHHCCCEEEEECC
T ss_conf 99----999874-----------------673347898589996765577------49999999-999984998999488
Q ss_pred CHHHHCCC
Q ss_conf 02310010
Q gi|255764515|r 161 PSPNGLID 168 (458)
Q Consensus 161 Pi~n~~~e 168 (458)
|.|-.+.+
T Consensus 470 ~~QLq~Ie 477 (992)
T PRK13889 470 PQQLQAIE 477 (992)
T ss_pred HHHCCCCC
T ss_conf 77718864
No 183
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.25 E-value=0.0049 Score=36.64 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=55.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.|+..+-|+|||-+|..++..+.-...... ..|.....+ ..+| ......++.-+.+......+
T Consensus 42 yLF~GprGtGKTT~ArilAkaLnC~~~~~~--~~pCg~C~~--C~~I---~~g~~~DViEiDaAs~~gVd---------- 104 (462)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKALNCQNPTED--QEPCNQCAI--CKEI---SSGTSLDVIEIDGASHRGIE---------- 104 (462)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCC--CCCCCCCHH--HHHH---HCCCCCCEEEECCCCCCCHH----------
T ss_conf 430389985999999999999679999888--898876688--8998---63899986864355344668----------
Q ss_pred ECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 8064202334420---00113220440453100246543115677776654305-9807996584
Q gi|255764515|r 100 INFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgT 160 (458)
.++.+.+.. -...+|...|+||+|.+. ..++.++.+.-.. ..+++++=+|
T Consensus 105 ----dIRel~e~v~~~P~~~~yKVyIIDEvhmLs-------~~AfNALLKtLEEPP~~v~FILaT 158 (462)
T PRK06305 105 ----DIRQINETVLFTPSKSQYKIYIIDEVHMLT-------KEAFNSLLKTLEEPPQHVKFFLAT 158 (462)
T ss_pred ----HHHHHHHHHCCCCCCCCEEEEEEECHHHCC-------HHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf ----999999771008867750599981521179-------999999999861898774999981
No 184
>PRK04195 replication factor C large subunit; Provisional
Probab=97.24 E-value=0.00097 Score=40.90 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=24.0
Q ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 32204404531002465431156777766543059807996584
Q gi|255764515|r 117 PFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 117 ~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
+..+||+||+|.+-+... ....+++.++..+++.-+.|+++
T Consensus 99 ~~KlIIlDEvD~l~~~~d---~gg~~al~~~ik~s~~PiIli~N 139 (403)
T PRK04195 99 KRKLILLDEVDGIHGNAD---RGGVRAILEIIKKAKNPIILTAN 139 (403)
T ss_pred CCEEEEEECCCCCCCHHH---HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 734999634344572444---79999999998548870899826
No 185
>KOG0923 consensus
Probab=97.23 E-value=0.00087 Score=41.18 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEE--CCHHHHH----HHHHHHHHHCCCCC
Q ss_conf 7478999999999679809995889986899999999999759--99499991--6046569----99999998558888
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWG--EKSVLVIA--PLRVAQS----VWTSEVQRWSNFSH 74 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~--~~~~LIv~--P~~l~~~----~W~~Ei~kf~~~~~ 74 (458)
.+||-.+-+..+.++.-.++..++|+|||-|. =.+|...| ++.-.|=| |..+... --.+|..--+ ...
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQi---PQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL-G~e 341 (902)
T KOG0923 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQI---PQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL-GHE 341 (902)
T ss_pred CHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC---CHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf 60639999999986708999757889864456---28988542135894674068506887779999999857401-431
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCC---CCCCEEECCCCCCCCCCCCCCHHHHH---HHHHHHH
Q ss_conf 15999858978988873077986998064202334420001---13220440453100246543115677---7766543
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGT---WPFATIVVDESTKLKSFRLRQGSKTA---RALAKPA 148 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~---~~~~~iIiDEaH~lkn~~~~~~s~~~---~~l~~~~ 148 (458)
+.+.+-..+ ..+.-.++-|=+=.-+.++++.. -.|..|||||||.= +-...-.+ +.+++..
T Consensus 342 VGYsIRFEd---------cTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHER----TL~TDILfgLvKDIar~R 408 (902)
T KOG0923 342 VGYSIRFED---------CTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHER----TLHTDILFGLVKDIARFR 408 (902)
T ss_pred CCEEEEECC---------CCCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEEEHHHHH----HHHHHHHHHHHHHHHHHC
T ss_conf 444888503---------5674122432243067998714634223359996024320----034567999878887508
Q ss_pred HCCCEEEEECCCCHHHHCCCHHHHHH-HCCCCCCCC
Q ss_conf 05980799658402310010134677-517888775
Q gi|255764515|r 149 WESERFIELTGTPSPNGLIDLWGQIW-FLDKGKRLG 183 (458)
Q Consensus 149 ~~~~~~l~LTgTPi~n~~~el~~ll~-~l~~~~~l~ 183 (458)
. .-..++.|||.-....+++|.-.- |.-||..++
T Consensus 409 p-dLKllIsSAT~DAekFS~fFDdapIF~iPGRRyP 443 (902)
T KOG0923 409 P-DLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYP 443 (902)
T ss_pred C-CCEEEEECCCCCHHHHHHHCCCCCEEECCCCCCC
T ss_conf 7-6047732222678999876168857723686565
No 186
>KOG1132 consensus
Probab=97.23 E-value=0.0078 Score=35.42 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHH
Q ss_conf 874789999999996----7980999588998689999
Q gi|255764515|r 2 NLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVL 35 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al 35 (458)
+.||-|..-...++. .-++++-+++|+|||+.-|
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 86458999999999998876312020889898149999
No 187
>PRK12377 putative replication protein; Provisional
Probab=97.22 E-value=0.0057 Score=36.26 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=36.6
Q ss_pred HHHHHHHHH--------HHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 789999999--------9967980999588998689999999999975999499991604656
Q gi|255764515|r 5 PHQTKIVDW--------ILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59 (458)
Q Consensus 5 p~Q~~~v~~--------~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~ 59 (458)
|=|..|+.. +-+..+.++..++|+|||-.|+++...+...| .+++.+.-+.++.
T Consensus 81 ~~~~~a~~~a~~~~~~F~~~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G-~sVlF~t~~dLv~ 142 (248)
T PRK12377 81 DGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKG-RSVIVVTVPDVMS 142 (248)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEHHHHHH
T ss_conf 7899999999999998731886089989999878899999999999879-9699988999999
No 188
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=97.21 E-value=0.0013 Score=40.22 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 99999999967980999588998689999999999975999499991604656
Q gi|255764515|r 7 QTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59 (458)
Q Consensus 7 Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~ 59 (458)
|....+|+....+.++..++|+|||..|.+++..+...| .+++.+.-..++.
T Consensus 37 ~L~~~~~i~~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g-~~v~f~~~~~L~~ 88 (178)
T pfam01695 37 ELAGLDWIEQAENLLLLGPPGVGKTHLACALGHQACRAG-YSVLFTRTPDLVE 88 (178)
T ss_pred HHHCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECHHHHH
T ss_conf 885597421587689989999878999999999999869-8599996167999
No 189
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0051 Score=36.51 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=56.5
Q ss_pred HHHHHHHH---HHCC---CE-EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999999---9679---80-99958899868999999999997599949999160465699999999855888815999
Q gi|255764515|r 7 QTKIVDWI---LDHK---RC-AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 7 Q~~~v~~~---~~~~---~~-ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
|..++..+ +..+ .+ |+..+.|+|||-+|.+++..+.-..... --|.+... ....+ ......++..
T Consensus 20 Qe~i~~~L~nal~~~ri~HAyLF~GP~GtGKts~ArifAkaLnC~~~~~---~~pC~~C~--~C~~i---~~g~~~DviE 91 (557)
T PRK07270 20 QEVVATTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMNCPNQVD---GEPCNNCD--ICRDI---TNGSLEDVIE 91 (557)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCCCH--HHHHH---HCCCCCCEEE
T ss_conf 1999999999998599540442108998689999999999957999899---99888777--99998---7589997487
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEE
Q ss_conf 85897898887307798699806420233442---000113220440453100246543115677776654305-98079
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFI 155 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l 155 (458)
+.+.+....+ .++.+.+. .-..-+|..+|+||||.+.. .++.++.+.-.. .++.+
T Consensus 92 idaas~~gVd--------------~IRei~~~~~~~P~~~~yKV~IIDEah~Ls~-------~A~NALLKtLEEPP~~~v 150 (557)
T PRK07270 92 IDAASNNGVD--------------EIRDIRDKSTYAPSRATYKVYIIDEVHMLST-------GAFNALLKTLEEPTENVV 150 (557)
T ss_pred ECCCCCCCHH--------------HHHHHHHHHCCCCCCCCEEEEEECCHHHCCH-------HHHHHHHHHHHCCCCCEE
T ss_conf 3477767889--------------9999999842387778838999714453499-------999989998528998769
Q ss_pred --EECCCC
Q ss_conf --965840
Q gi|255764515|r 156 --ELTGTP 161 (458)
Q Consensus 156 --~LTgTP 161 (458)
+.|-.|
T Consensus 151 FIL~Ttep 158 (557)
T PRK07270 151 FILATTEL 158 (557)
T ss_pred EEEEECCH
T ss_conf 99984994
No 190
>pfam11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3. This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus.
Probab=97.15 E-value=0.012 Score=34.18 Aligned_cols=180 Identities=13% Similarity=0.154 Sum_probs=94.4
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHC----CCCCCHH---------HHHH-HHHHHHHHCCCCCCCC-----------CCC
Q ss_conf 0345245368998889999998510----3345202---------2347-8888754203541000-----------223
Q gi|255764515|r 244 TKKVPLPQPVMKQYHKFQRELYCDL----QGENIEA---------FNSA-SKTVKCLQLANGAVYY-----------DEE 298 (458)
Q Consensus 244 ~~~v~l~~~~~~~y~~~~~~~~~~~----~~~~~~~---------~~~~-~~~~~l~q~~~~~~~~-----------~~~ 298 (458)
....+|+.-|+..|+.+...-...+ .+..... .... .-..++..+|+||-+. .+.
T Consensus 7 ~lP~pM~~~qKdl~e~ivslh~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Va~HP~LlidH~~p~~l~~~~~ 86 (278)
T pfam11496 7 YLPTPMTSLQKDLTEQIVSLHYSDILKFCETSSSKEDIIKLLEDLAESIKLLFENLSNVATHPYLLIDHYMPKSLLLKEE 86 (278)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCH
T ss_conf 75056136788899999999889999998147752111112100899999999975554279326434557876644244
Q ss_pred CCCHHCCCCCCCCHHHHHHC----CCCCEEEEHHHHHHHHHHHHHCCCC---------CCCH-HHHHHHHHHHC-CCCCC
Q ss_conf 43000134333325665412----4884034222367888664100026---------5334-45899876424-58855
Q gi|255764515|r 299 KHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL-DKDPCTIQEWN-EGKIP 363 (458)
Q Consensus 299 ~~~~~~~~~k~~~l~~il~~----~~~~kviif~~~~~~~~~i~~~~~~---------g~~~-~~r~~~i~~f~-~~~~~ 363 (458)
..+....|+|+..|.++++. ..+-.++|+++-..+++.+..-+.+ |.+. ++... ...++ .....
T Consensus 87 ~~~~~~tSgKF~~L~~Li~~~~~~~~~~~ilIv~~~~k~ldLlE~~llgk~~~y~r~~g~~~~~~~~~-~~~~k~~~s~~ 165 (278)
T pfam11496 87 AEHLAETSGKFLVLNDLINLLIPSERDLHVLIISRSGKTLDLVEALLLGKGLKYKRLSGESLYEENHK-VSDKKGSLSFW 165 (278)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-CCCCCCCCEEE
T ss_conf 78999823339999999999873457837999978953799999997258646760788767665545-65557884069
Q ss_pred EEEEEHHHCCCCCCC-------CCCCCEEEEECCCCCHHHH-HHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf 899844221116220-------0178599990899898686-44566662022020378775289999858996899999
Q gi|255764515|r 364 LLFAHPASCGHGLNL-------QYGGNILVFFSLWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 435 (458)
Q Consensus 364 vli~s~~~~~~GlnL-------~~a~~~iI~~~~~wn~~~~-~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~ 435 (458)
|.++++ .|+.- ....+++|-+|+.+++..- .|..... +|.| +++-+++|+..+|+|.-.+.
T Consensus 166 I~l~~~----~~~~~~~~~~~~~~~~d~Iia~D~s~d~~~p~ie~lR~~-----~~~~--~~~PvirLv~~nSiEHi~l~ 234 (278)
T pfam11496 166 IHLTTS----DGLTNTDSSLLSNYKFDLIISFDPSLDTSLPSIESLRTT-----NRRG--RLTPIIRLVVVNSIEHIELC 234 (278)
T ss_pred EEEECC----CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH-----CCCC--CCCCEEEEEECCCHHHHHHH
T ss_conf 997068----775457888443565277999568879897489999863-----4489--98877999526999999987
No 191
>KOG0952 consensus
Probab=97.11 E-value=0.00075 Score=41.57 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHCCCCHHCCCCC
Q ss_conf 98986864456666202202037877
Q gi|255764515|r 391 WWDLEEHQQMIERIGVTRQRQAGFKR 416 (458)
Q Consensus 391 ~wn~~~~~Q~~gRi~~~r~hR~Gq~~ 416 (458)
+|-....-|...=+.-++.|=.|..+
T Consensus 1037 sw~~r~~v~~v~~iv~de~hllg~~r 1062 (1230)
T KOG0952 1037 SWQTRKYVQSVSLIVLDEIHLLGEDR 1062 (1230)
T ss_pred CCCCHHHHCCCCCEEECCCCCCCCCC
T ss_conf 42331121125610201221346777
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=97.11 E-value=0.0074 Score=35.54 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=37.5
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 99999967980999588998689999999999975999499991604656
Q gi|255764515|r 10 IVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59 (458)
Q Consensus 10 ~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~ 59 (458)
..+|+..+.+.++..++|+|||..|+++.......| .+++.+.-..++.
T Consensus 94 ~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G-~~v~f~~~~~L~~ 142 (258)
T PRK09183 94 SLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTTAADLLL 142 (258)
T ss_pred CCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEHHHHHH
T ss_conf 581665588679989999868999999999999879-9399978999999
No 193
>PRK06526 transposase; Provisional
Probab=97.11 E-value=0.0066 Score=35.87 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 99999967980999588998689999999999975999499991604656
Q gi|255764515|r 10 IVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59 (458)
Q Consensus 10 ~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~ 59 (458)
..+|+.++.+.++..++|+|||..|+++.......| .+++.+.-..++.
T Consensus 91 ~~~fi~~~~Nvil~G~~GtGKThLA~Alg~~A~~~G-~~v~f~~~~~L~~ 139 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAG-HRVLFATAAQWVA 139 (254)
T ss_pred CCCHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEHHHHHH
T ss_conf 371776588789989999868999999999999869-9679987799999
No 194
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.10 E-value=0.0083 Score=35.23 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=59.2
Q ss_pred HHHHHHHHH---HCC---C-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999---679---8-099958899868999999999997599949999160465699999999855888815999
Q gi|255764515|r 7 QTKIVDWIL---DHK---R-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 7 Q~~~v~~~~---~~~---~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
|...+..+. ..+ . .|+..+.|+|||-+|.+++..|.-.. .+. ..|.....+ ..++ ....+.++..
T Consensus 21 Qe~vv~~L~nai~~~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~-~~~--~~PCg~C~s--C~~i---~~g~~~DviE 92 (560)
T PRK06647 21 QDFVVETLKHSIEKNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-GPT--IMPCGECFS--CKSI---DNDSSLDVIE 92 (560)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCC--CCCCCCCHH--HHHH---HCCCCCCEEE
T ss_conf 4999999999997499774366328998789999999999965999-999--888878878--8887---4599987576
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEE
Q ss_conf 8589789888730779869980642023344200---0113220440453100246543115677776654305-98079
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFI 155 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l 155 (458)
+.+..... .+.++.+.+... ..-+|..+|+||||.+. ..++.++.+.... +.+.+
T Consensus 93 idaasn~~--------------VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt-------~~A~NALLKtLEEPP~~~~ 151 (560)
T PRK06647 93 IDGASNTS--------------VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------NSAFNALLKTIEEPPPYIV 151 (560)
T ss_pred ECCCCCCC--------------HHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-------HHHHHHHHHHHHCCCCCEE
T ss_conf 43645488--------------89999999986328766870699964656559-------9999999998634887559
Q ss_pred EECCC
Q ss_conf 96584
Q gi|255764515|r 156 ELTGT 160 (458)
Q Consensus 156 ~LTgT 160 (458)
++=+|
T Consensus 152 FILaT 156 (560)
T PRK06647 152 FIFAT 156 (560)
T ss_pred EEEEC
T ss_conf 99977
No 195
>KOG0926 consensus
Probab=97.09 E-value=0.00096 Score=40.93 Aligned_cols=142 Identities=20% Similarity=0.147 Sum_probs=61.6
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCC-EEEEE-CCHHHH---HH-HHHHHHHHCCCCCCEEEEE
Q ss_conf 999999679809995889986899999999999759---994-99991-604656---99-9999998558888159998
Q gi|255764515|r 10 IVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWG---EKS-VLVIA-PLRVAQ---SV-WTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 10 ~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~---~~~-~LIv~-P~~l~~---~~-W~~Ei~kf~~~~~~~~~~~ 80 (458)
.++.+-.|+-.+++.++|+|||-|.=-++-..-... ..+ ++=|+ |..+.. .+ -..|+..|. ..+.+.+-
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~--~eVsYqIR 341 (1172)
T KOG0926 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLG--SEVSYQIR 341 (1172)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCC--CCEEEEEE
T ss_conf 9998622874999548888864434189987134776679987054057227899999999999852576--41148998
Q ss_pred -ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCC----CCHHHHHHHHHHHHH-----C
Q ss_conf -589789888730779869980642023344200011322044045310024654----311567777665430-----5
Q gi|255764515|r 81 -TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRL----RQGSKTARALAKPAW-----E 150 (458)
Q Consensus 81 -~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~----~~~s~~~~~l~~~~~-----~ 150 (458)
.|+. ..+..|-.+|-.-+-+....-....+|..||+||||.= |..+ ..-|+..+.-.+... +
T Consensus 342 fd~ti-------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926 342 FDGTI-------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred ECCCC-------CCCCEEEEECCHHHHHHHHHHHHHHHCEEEEECHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 53656-------88740477402388999887675542015785125430-31278999999887788899766413567
Q ss_pred CCEEEEECCCC
Q ss_conf 98079965840
Q gi|255764515|r 151 SERFIELTGTP 161 (458)
Q Consensus 151 ~~~~l~LTgTP 161 (458)
.-+.++||||-
T Consensus 414 pLKLIIMSATL 424 (1172)
T KOG0926 414 PLKLIIMSATL 424 (1172)
T ss_pred CEEEEEEEEEE
T ss_conf 61699974147
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.09 E-value=0.0023 Score=38.59 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 79809995889986899999999999759994999916046569999999
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEV 66 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei 66 (458)
.+..+|..++|+|||..|-+++..+... ..+++.+-...+.. .|..+.
T Consensus 19 ~~~ill~GppGtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 66 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLE-GLVVAE 66 (151)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEEHHHCCH-HHHHHH
T ss_conf 9808998999988659999999971213-79827854777046-777757
No 197
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.08 E-value=0.0078 Score=35.41 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=53.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEC--CHHHHH---HHH--C
Q ss_conf 099958899868999999999997599949999160465699999999855888815999858--978988---873--0
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITG--TVKQRT---KVL--K 92 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g--~~~~r~---~~~--~ 92 (458)
.+++..+|.|||..++.++.........+++++++---......+-+...+..+..+. ..| +..... +.. .
T Consensus 22 ~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~~~R~~a~~~~v~~~~i--~~~~~~~~~~~~~~~~~~~~ 99 (186)
T pfam03796 22 IIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQLAERLLSSESRISSSKL--RSGQLSDEDWERLAEAAGEL 99 (186)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHH--HCCCHHHHHHHHHHHHHHHH
T ss_conf 9999679998799999999999997099668754755299999999998626765554--12512167999999999998
Q ss_pred CCCCEEEECC-----CCHHHHHHHCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 7798699806-----4202334420001132204404531002465
Q gi|255764515|r 93 TPAVLYVINF-----ENLGWLVQELKGTWPFATIVVDESTKLKSFR 133 (458)
Q Consensus 93 ~~~~i~i~s~-----e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~ 133 (458)
....+++... +.+....+.+....+.++||+|=.+.++.+.
T Consensus 100 ~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~ 145 (186)
T pfam03796 100 SEAPLYIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSK 145 (186)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCC
T ss_conf 5398688479999899999999999985599889974898636778
No 198
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.0089 Score=35.07 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHH---HHCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 7899999999---96798----0999588998689999999999975999499991604656999999998558888159
Q gi|255764515|r 5 PHQTKIVDWI---LDHKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 5 p~Q~~~v~~~---~~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
-+|..+++.+ +..++ .|+..+-|+||+..|.+++..+.=...... -|.... ..+.++....+.++
T Consensus 9 ~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~---~~Cg~C-----~~C~~~~~~~HPD~ 80 (329)
T PRK08058 9 ALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTC-----TNCKRIESGNHPDV 80 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCC-----HHHHHHHCCCCCCE
T ss_conf 3189999999999985996615655789998899999999999739999999---988788-----89999876999976
Q ss_pred EEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CE
Q ss_conf 9985897898887307798699806420233442000---1132204404531002465431156777766543059-80
Q gi|255764515|r 78 SVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES-ER 153 (458)
Q Consensus 78 ~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~-~~ 153 (458)
..+....+. +..+.++.+.+.... .-.|..+||||||++ | ..+++++.|.-... .+
T Consensus 81 ~~i~p~~~~-------------i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m-~------~~AaNALLKtLEEPp~~ 140 (329)
T PRK08058 81 HLVAPDGQS-------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-T------ASAANSLLKFLEEPSGD 140 (329)
T ss_pred EEECCCCCC-------------CCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH-C------HHHHHHHHHHHHCCCCC
T ss_conf 774566140-------------779999999999643875788679997347762-9------99999999986468978
Q ss_pred -EEEECCC
Q ss_conf -7996584
Q gi|255764515|r 154 -FIELTGT 160 (458)
Q Consensus 154 -~l~LTgT 160 (458)
+++|.+|
T Consensus 141 t~fIL~t~ 148 (329)
T PRK08058 141 TTAILLTE 148 (329)
T ss_pred CEEEEEEC
T ss_conf 67998729
No 199
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.04 E-value=0.0068 Score=35.76 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=55.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH----HHC
Q ss_conf 09995889986899999999999759---99499991604656999999998558888159998589789888----730
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWG---EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTK----VLK 92 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~---~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~----~~~ 92 (458)
.++..+-|+|||-+|-.++..+.-.. ..+. .-|.....+ ..++ ....+.++.-+...+....+ +..
T Consensus 46 ylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~--~~~c~~c~~--c~~i---~~~~~~dv~EiDaas~~gv~~ir~l~~ 118 (507)
T PRK06645 46 YLLTGIRGVGKTTSARIIAKAVNCSALITENTT--IKTCEKCTN--CISF---NNHNHPDIIEIDAASKTSVDDIRRIIE 118 (507)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCHH--HHHH---HCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 774587997889999999999679998888998--888888767--8998---658999859963788888899999986
Q ss_pred CCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 77986998064202334420001132204404531002465431156777766543-059807996584
Q gi|255764515|r 93 TPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGT 160 (458)
Q Consensus 93 ~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgT 160 (458)
. +.|-. ...+|...|+||+|.+. ..++.++.+.- ..++++.+.=||
T Consensus 119 ~------~~~~p---------~~~~~kv~iidE~hmls-------~~a~nallktlEepp~~~~Fi~at 165 (507)
T PRK06645 119 S------AEYKP---------LQGKHKIFIIDEVHMLS-------KGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred H------CCCCC---------CCCCEEEEEECCHHHCC-------HHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 3------55178---------76743589952142248-------999999999742786443899974
No 200
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.013 Score=34.07 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
Q ss_conf 9996798099958899868999999999997599949999160465699999
Q gi|255764515|r 13 WILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTS 64 (458)
Q Consensus 13 ~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~ 64 (458)
|.-...+.++..++|+|||..|.|++-.+... ..+++++.-+.++. ....
T Consensus 101 ~~~~~~nl~l~G~~G~GKthLa~Ai~~~l~~~-g~sv~f~~~~el~~-~Lk~ 150 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLLS-KLKA 150 (254)
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEHHHHHH-HHHH
T ss_conf 73258828998999987999999999999983-98499988599999-9999
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.013 Score=34.05 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=53.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
+|+...-|+|||-+|-+++..|+-.. .+. --|.....+ ..+|..- ....++|.-+.+.+....
T Consensus 40 YLFsGprG~GKTt~ARilAkaLNC~~-~~~--~~PCg~C~s--C~~i~~g-~~~~~DviEiDAAS~~gV----------- 102 (775)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCAQ-GPT--STPCGVCDS--CVALAPG-GPGSLDVVEIDAASHGGV----------- 102 (775)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC-CCC--CCCCCCCHH--HHHHHCC-CCCCCCEEEECCCCCCCH-----------
T ss_conf 76237888788899999999966899-999--898888763--7888638-988886687315655688-----------
Q ss_pred ECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 80642023344200---0113220440453100246543115677776654305-9807996584
Q gi|255764515|r 100 INFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgT 160 (458)
+.++.+.+... ..-+|...||||+|.+. ...++++.|.-.. ..+++++=+|
T Consensus 103 ---ddiReL~e~~~y~P~~~ryKVyIIDEaHmls-------~~afNALLKtLEEPP~hvvFIlaT 157 (775)
T PRK07764 103 ---DDARELRERAFFAPAQSRYRIFIIDEAHMVT-------TAGFNALLKIVEEPPEHLIFIFAT 157 (775)
T ss_pred ---HHHHHHHHHCCCCCCCCCEEEEEEECHHHHC-------HHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf ---9999999854768767863599985354407-------999999988622786462799954
No 202
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.027 Score=32.13 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=5.9
Q ss_pred HHHHHHHCCCCCCEEE
Q ss_conf 9987642458855899
Q gi|255764515|r 351 PCTIQEWNEGKIPLLF 366 (458)
Q Consensus 351 ~~~i~~f~~~~~~vli 366 (458)
.++++.|..-...-+|
T Consensus 302 ~~i~~~f~~~~~~~~I 317 (404)
T PRK06995 302 NEVVQAYRGPGLAGCI 317 (404)
T ss_pred HHHHHHHCCCCCCEEE
T ss_conf 9999984469998399
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.91 E-value=0.02 Score=32.91 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 874789999999996798-0999588998689999999999975999499991604656999999998558888159998
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
+|-+-|.+|+.++...++ +++..--|+|||.+ |.++...+.....+++=.+|++... +.+++ ..++....+
T Consensus 381 ~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKStm-L~aAReawEa~GyrV~GaALsGkAA----egLe~---~sGI~SrTl 452 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGAERIAAVIGRAGAGKTTM-MKAAREAWEAAGYRVVGGALAGKAA----EGLEK---EAGIASRTL 452 (1102)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHH-HHHHHHHHHHCCCEEEEECCCHHHH----HHHHH---CCCCCCHHH
T ss_conf 389999999998537886689984288878899-9999999997797798015007899----97753---469530338
Q ss_pred ECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 58978988873077986998064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 81 TGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 81 ~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
.+ -.-.|... -.....-+.+|||||-.+ .+.+..+.+. ...++.-++.|-|-
T Consensus 453 As----~e~~w~~g-----------------r~~L~~~dVlVIDEAGMV------gsrqmarvl~-~ae~aGAKvVLVGD 504 (1102)
T PRK13826 453 SS----WELRWNQG-----------------RDQLDNKTVFVLDEAGMV------SSRQMALFVE-AVTRAGAKLVLVGD 504 (1102)
T ss_pred HH----HHHHHCCC-----------------CCCCCCCCEEEEECCCCC------CHHHHHHHHH-HHHHCCCEEEEECC
T ss_conf 99----99874358-----------------655678738998455565------5799999999-99975998999688
Q ss_pred CHHHHCCC
Q ss_conf 02310010
Q gi|255764515|r 161 PSPNGLID 168 (458)
Q Consensus 161 Pi~n~~~e 168 (458)
|-|-.|.+
T Consensus 505 ~~QLQpIe 512 (1102)
T PRK13826 505 PEQLQPIE 512 (1102)
T ss_pred HHHHCCCC
T ss_conf 78827610
No 204
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.012 Score=34.20 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=35.2
Q ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 999967980999588998689999999999975999499991604656
Q gi|255764515|r 12 DWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59 (458)
Q Consensus 12 ~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~ 59 (458)
.|+.+..+.++..++|+|||..|+++.......| .+++.+.-..++.
T Consensus 101 ~fi~~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G-~~V~f~~~~~L~~ 147 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFTRTTDLVQ 147 (269)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEHHHHHH
T ss_conf 5886487089989999878899999999999879-9399978999999
No 205
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=96.81 E-value=0.0089 Score=35.06 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CC--CCEEEEECCHHH
Q ss_conf 747899999999967980999588998689999999999975-99--949999160465
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLW-GE--KSVLVIAPLRVA 58 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~-~~--~~~LIv~P~~l~ 58 (458)
|.|-|.+||.. ..+..++....|+|||.+...-+..+... +. ..+|+|+-+.-.
T Consensus 1 Ln~~Q~~av~~--~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kA 57 (494)
T pfam00580 1 LNPEQRKAVTH--LGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKA 57 (494)
T ss_pred CCHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHH
T ss_conf 99889999809--9999799971870689999999999998189997478767028999
No 206
>PRK08116 hypothetical protein; Validated
Probab=96.79 E-value=0.019 Score=33.05 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=29.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 80999588998689999999999975999499991604656999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSE 65 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~E 65 (458)
+.++..++|+|||..|.+++..+...| .+++++.-..++ +.....
T Consensus 110 GLll~G~~GtGKThLa~aIa~~l~~~g-~~V~~~~~~~ll-~~lk~~ 154 (262)
T PRK08116 110 GLLLWGSPGNGKTYLAAAIANELIEKG-VPVVFVNVPELL-NRIKST 154 (262)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEHHHHH-HHHHHH
T ss_conf 189989899989999999999999879-939998899999-999999
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.013 Score=34.03 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHH---CCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 9874789999999996---798----099958899868999999999997599949999160465699999999855888
Q gi|255764515|r 1 MNLAPHQTKIVDWILD---HKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~---~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
|++||||...-+.+.. .+| .++..+.|+||...|..++..+.=..... . -|.+. ...+..+....
T Consensus 1 m~~YPWl~~~~~~l~~~~~~~rl~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~-~--~~Cg~-----C~~C~l~~~~~ 72 (334)
T PRK07993 1 MKWYPWLRPDYEKLVGSYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-H--KSCGH-----CRGCQLMQAGT 72 (334)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-C--CCCCC-----CHHHHHHHCCC
T ss_conf 9888887899999999998598104675479999889999999999981899999-9--99999-----97899986689
Q ss_pred CCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 81599985897898887307798699806420233442000---113220440453100246543115677776654305
Q gi|255764515|r 74 HMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE 150 (458)
Q Consensus 74 ~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~ 150 (458)
+.+++++....... -+..+.++.+.+.... .-.+..+|||+|+.+ | ..+.+++.|.-..
T Consensus 73 HPD~~~i~pe~~~~-----------~I~IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~m-n------~~AaNaLLKtLEE 134 (334)
T PRK07993 73 HPDYYTLTPEKGKS-----------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALL-T------DAAANALLKTLEE 134 (334)
T ss_pred CCCEEEECCCCCCC-----------CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH-C------HHHHHHHHHHHCC
T ss_conf 99847753422345-----------5999999999999843665699479997667775-9------9999999986127
Q ss_pred -CC--EEEEECCCC
Q ss_conf -98--079965840
Q gi|255764515|r 151 -SE--RFIELTGTP 161 (458)
Q Consensus 151 -~~--~~l~LTgTP 161 (458)
+. ..+++|-.|
T Consensus 135 Pp~~t~~iL~t~~~ 148 (334)
T PRK07993 135 PPEKTWFFLACREP 148 (334)
T ss_pred CCCCEEEEEECCCH
T ss_conf 99884999866985
No 208
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.014 Score=33.81 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHH---HCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 87478999999999---6798----0999588998689999999999975999499991604656999999998558888
Q gi|255764515|r 2 NLAPHQTKIVDWIL---DHKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~---~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
-|||||...-+.+. ..+| .++..+.|+||+..|..++..+.=...... .|-.. ...+..+....+
T Consensus 1 ~lYPWl~~~~~~l~~~~~~~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~~~---~~Cg~-----C~sC~l~~~g~H 72 (324)
T PRK06871 1 ALYPWLQPIYQQITQTFLQGRGHHALLFKADSGLGTEQLIRALAQWLMCQAPGDE---QPCGQ-----CHSCHLFQAGNH 72 (324)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC---CCCCC-----CHHHHHHHCCCC
T ss_conf 9888657999999999986995437876899997899999999999828999999---98888-----989999973899
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCC
Q ss_conf 159998589789888730779869980642023344200---0113220440453100
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKL 129 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~l 129 (458)
.++..+...... -+..+.++.+.+... ..-.+..+|||+||.+
T Consensus 73 PD~~~i~~~~~k------------~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m 118 (324)
T PRK06871 73 PDFHILEPIDGK------------DIGVDQVREINEKVSQFAQQGGNKVVYIQGAERL 118 (324)
T ss_pred CCEEEEECCCCC------------CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 987998467888------------7889999999999864622059669997588885
No 209
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.012 Score=34.17 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=56.2
Q ss_pred HHHHHHHHH---HCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 999999999---6798----099958899868999999999997599949999160465699999999855888815999
Q gi|255764515|r 7 QTKIVDWIL---DHKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 7 Q~~~v~~~~---~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
|..++..+. ..++ .|+..+-|+|||-+|.+++..+.-.+..... -|..... + .....+++.-
T Consensus 23 Qe~Vv~tL~nAI~~gRIaHAYLF~GPRGvGKTT~ARIfAKaLNC~~~~d~~--~pC~~C~-----~----~~~~s~DViE 91 (718)
T PRK07133 23 QDHIIETLKNIIKSGKISHAYLFSGPHGTGKTSVAKIFANALNCSHKTDLI--EPCQNCI-----E----NFNNNLDIIE 91 (718)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCCCCHH-----H----CCCCCCCEEE
T ss_conf 599999999999749975058623899868899999999996799999999--9770214-----3----0478987377
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf 858978988873077986998064202334420---0011322044045310024654311567777665430-598079
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW-ESERFI 155 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~-~~~~~l 155 (458)
+.+.+... .+.++.+.+.. -...+|...|+||||.+. ..++.++.+.-. -+++++
T Consensus 92 IDAASn~g--------------VDdIReLie~v~y~P~~gkYKVyIIDEvHMLS-------~~AfNALLKtLEEPP~hvv 150 (718)
T PRK07133 92 MDAASNNG--------------VDEIRELRENVKNLPQISKYKIYIIDEVHMLS-------KSAFNALLKTLEEPPKHVI 150 (718)
T ss_pred ECCCCCCC--------------HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHCCCCCCCE
T ss_conf 54556688--------------89999999982558877872499996620079-------9999999985027987827
Q ss_pred EECCCC
Q ss_conf 965840
Q gi|255764515|r 156 ELTGTP 161 (458)
Q Consensus 156 ~LTgTP 161 (458)
.+=||.
T Consensus 151 FILaTT 156 (718)
T PRK07133 151 FILATT 156 (718)
T ss_pred EEEEEC
T ss_conf 999708
No 210
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.74 E-value=0.0032 Score=37.78 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=28.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC-CHHHH
Q ss_conf 95889986899999999999759994999916-04656
Q gi|255764515|r 23 WASMGSGKTVSVLTALSYIHLWGEKSVLVIAP-LRVAQ 59 (458)
Q Consensus 23 ~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P-~~l~~ 59 (458)
-+.+|+|||+++-+++.+...+|-+..|..|- +++++
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILE 40 (812)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCHHHEEEEECCHHHHH
T ss_conf 43358870059999999999734041899852116888
No 211
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.012 Score=34.21 Aligned_cols=111 Identities=13% Similarity=0.154 Sum_probs=51.6
Q ss_pred HHHHHHHH---HHCCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCC---------EEEEECCHHHHHHHHHHHHHHC
Q ss_conf 99999999---96798----09995889986899999999999759994---------9999160465699999999855
Q gi|255764515|r 7 QTKIVDWI---LDHKR----CAIWASMGSGKTVSVLTALSYIHLWGEKS---------VLVIAPLRVAQSVWTSEVQRWS 70 (458)
Q Consensus 7 Q~~~v~~~---~~~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~---------~LIv~P~~l~~~~W~~Ei~kf~ 70 (458)
|..+++.+ +..++ .|+..+.|.|||-.|..++..+.-.+... .+-+.|..- -.+.+.
T Consensus 22 qe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p----~~r~i~--- 94 (363)
T PRK07471 22 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHP----VARRIA--- 94 (363)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC----HHHHHH---
T ss_conf 1999999999998599764587679998188999999999985799977777678705312587772----899995---
Q ss_pred CCCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCC
Q ss_conf 8888159998589789888730779869980642023344200---0113220440453100
Q gi|255764515|r 71 NFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKL 129 (458)
Q Consensus 71 ~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~l 129 (458)
...+.++..+.-.......... -.|+.+.++.+.+.+. ..-.|..+||||+|.+
T Consensus 95 ~~~hpdl~~i~r~~d~k~~~~~-----~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~m 151 (363)
T PRK07471 95 AGAHGGLLTLERSWNEKGKRLR-----TVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEM 151 (363)
T ss_pred CCCCCCEEEEECCCCCCCCCCC-----CCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH
T ss_conf 2699984667620011333212-----44539999999999724852489669998687873
No 212
>KOG0738 consensus
Probab=96.70 E-value=0.0092 Score=34.96 Aligned_cols=10 Identities=0% Similarity=0.056 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q gi|255764515|r 60 SVWTSEVQRW 69 (458)
Q Consensus 60 ~~W~~Ei~kf 69 (458)
++|..+...|
T Consensus 67 k~i~~~~~~~ 76 (491)
T KOG0738 67 KQIVRDLRDL 76 (491)
T ss_pred HHHHHHHHHH
T ss_conf 9998778861
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.022 Score=32.63 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHH---CCC----EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 9874789999999996---798----099958899868999999999997599949999160465699999999855888
Q gi|255764515|r 1 MNLAPHQTKIVDWILD---HKR----CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~---~~~----~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
+.||||+...-+.+.. .+| .++..+.|+||+-.|..++..+.=..... -|-.. ...+..+....
T Consensus 2 ~~~YPWl~~~~~~l~~~~~~~rl~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~----~~Cg~-----C~sC~l~~~g~ 72 (319)
T PRK06090 2 NNDYPWLVPVWQNWKSGLDAERIPGALLLQSDEGLGVESLVELFSHALLCQNYQS----EACGF-----CHSCELMKSGN 72 (319)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC----CCCCC-----CHHHHHHHCCC
T ss_conf 9889883799999999998699630676679998579999999999980899999----98877-----87799987589
Q ss_pred CCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCC
Q ss_conf 8159998589789888730779869980642023344200---0113220440453100
Q gi|255764515|r 74 HMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKL 129 (458)
Q Consensus 74 ~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~l 129 (458)
+.+++.+.-..... .++.+.++.+.+... ..-.+..+|||+||.+
T Consensus 73 HPD~~~i~pe~~~k-----------~I~vd~IR~l~~~~~~~~~~g~~KV~iI~~ae~m 120 (319)
T PRK06090 73 HPDLHVIKPEKEGK-----------SITVEQIRQCNRLAQESSQLGGYRLFVIEPADAM 120 (319)
T ss_pred CCCCEEEECCCCCC-----------CCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC
T ss_conf 99823661233567-----------6879999999999754521069369998144434
No 214
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.59 E-value=0.037 Score=31.30 Aligned_cols=126 Identities=21% Similarity=0.084 Sum_probs=66.3
Q ss_pred CHHHHHHHHHH----HH-C---CCEEEEECCCCCHHHHHHHHHHHHHHCCCC--CE-EEEEC-----CHHHHHHHHHHHH
Q ss_conf 47899999999----96-7---980999588998689999999999975999--49-99916-----0465699999999
Q gi|255764515|r 4 APHQTKIVDWI----LD-H---KRCAIWASMGSGKTVSVLTALSYIHLWGEK--SV-LVIAP-----LRVAQSVWTSEVQ 67 (458)
Q Consensus 4 ~p~Q~~~v~~~----~~-~---~~~ll~~~~G~GKT~~al~~~~~l~~~~~~--~~-LIv~P-----~~l~~~~W~~Ei~ 67 (458)
|+-|.+.+... +. + .+.+|...+|+|||.++-.++..|...... -. +.++- -+... +=..++.
T Consensus 22 RdeqI~~l~~~L~~~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y-~~~~~L~ 100 (383)
T TIGR02928 22 RDEQIEELAKALRPILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSY-QVLVELA 100 (383)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHH-HHHHHHH
T ss_conf 678999999998875067489872588788898788999999999999862269971589997785468469-9999999
Q ss_pred HHCCCCCCEE-EEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC-CCCCCCEEECCCCCCC--CCCCCCCHHHHHHH
Q ss_conf 8558888159-998589789888730779869980642023344200-0113220440453100--24654311567777
Q gi|255764515|r 68 RWSNFSHMNI-SVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK-GTWPFATIVVDESTKL--KSFRLRQGSKTARA 143 (458)
Q Consensus 68 kf~~~~~~~~-~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~-~~~~~~~iIiDEaH~l--kn~~~~~~s~~~~~ 143 (458)
......+... ...+|-+..+ .+..+.+.+. .....-+||+||-=+| ++......|+..=.
T Consensus 101 ~~ln~~~~~~~vP~tG~s~~~----------------~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~ 164 (383)
T TIGR02928 101 NQLNRRGSGEEVPTTGLSTSE----------------VFRELYKELNRERGDSLIIVLDEIDKLVRKDDDDPAYSKLLYQ 164 (383)
T ss_pred HHHCCCCCCCCCCCCCCCHHH----------------HHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCHHHHHHHHH
T ss_conf 985157788889887787899----------------9999999983201887999862310221588888078788534
Q ss_pred HHH
Q ss_conf 665
Q gi|255764515|r 144 LAK 146 (458)
Q Consensus 144 l~~ 146 (458)
|.+
T Consensus 165 L~R 167 (383)
T TIGR02928 165 LSR 167 (383)
T ss_pred HHH
T ss_conf 331
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.58 E-value=0.0069 Score=35.72 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf 98099958899868999999999997599949999160465
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA 58 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~ 58 (458)
...++..++|+|||..+..++..+.... ..++.+.+....
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~-~~v~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHH
T ss_conf 7899999997029999999998726689-968998759989
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.037 Score=31.34 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=56.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
+|+...-|+|||-+|=.++..|+-.... --.|.+...+ ..||.. ...+++.-+.+.+....+-.
T Consensus 41 ylf~G~rGvGKTt~aRi~Ak~lnC~~~~---~~~pcg~C~~--C~~i~~---g~~~d~iEiDaAS~~~vd~~-------- 104 (816)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALNCETGV---TSQPCGVCRA--CREIDE---GRFVDYVEMDAASNRGVDEM-------- 104 (816)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCC---CCCCCCCCHH--HHHHHC---CCCCCEEEEECCCCCCHHHH--------
T ss_conf 7511789888889999999986789999---9897877555--787755---88775478635543576899--------
Q ss_pred ECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 806420233442---0001132204404531002465431156777766543-059807996584
Q gi|255764515|r 100 INFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgT 160 (458)
+-+.+. .-...+|+..||||+|.+.+ ..++++.|.- .-..++.++=||
T Consensus 105 ------r~l~~~~~y~p~~~r~KvyiiDEvHmls~-------~afnalLKtlEepP~hv~FilaT 156 (816)
T PRK07003 105 ------AALLERAVYAPVDARFKVYMIDEVHMLTN-------HAFNAMLKTLEEPPPHVKFILAT 156 (816)
T ss_pred ------HHHHHHCCCCCCCCCEEEEEEECHHHCCH-------HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf ------99998622478667447999841543399-------99999998403798664899955
No 217
>TIGR00604 rad3 DNA repair helicase (rad3); InterPro: IPR013020 All proteins in this family for which functions are known are DNA-DNA helicases that function in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. .
Probab=96.54 E-value=0.013 Score=33.98 Aligned_cols=134 Identities=10% Similarity=0.204 Sum_probs=75.6
Q ss_pred CHHHHHHCCC--CCEEEEHHHHHHHHHHH-----------------------HHCCCCCCCH-HHHHHHHHHHC----CC
Q ss_conf 2566541248--84034222367888664-----------------------1000265334-45899876424----58
Q gi|255764515|r 311 ALEVIIEKAN--AAPIIVAYHFNSDLARL-----------------------QKAFPQGRTL-DKDPCTIQEWN----EG 360 (458)
Q Consensus 311 ~l~~il~~~~--~~kviif~~~~~~~~~i-----------------------~~~~~~g~~~-~~r~~~i~~f~----~~ 360 (458)
.|.++++-.+ +.-|++|+.|.-+-..+ +..|.+..-. .+...+++.|+ +|
T Consensus 598 ~l~~~~~~~Pkk~Giv~FfpSY~yl~~~v~~W~~~gi~~~snesfWek~~~~K~if~E~~D~~~e~~~~~~~Y~~a~~~G 677 (813)
T TIGR00604 598 LLVELSKIIPKKDGIVVFFPSYSYLEQIVSTWKEMGILENSNESFWEKIEKKKLIFVETKDAPQETSDALERYKQAVSEG 677 (813)
T ss_pred HHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999971588788789976389999999998753720100046899987487558608888788699999989998618
Q ss_pred CCCEEEEEH-HHCCCCCCCCC-CCCEEEEECCCC-CH---------------------------------------HHHH
Q ss_conf 855899844-22111622001-785999908998-98---------------------------------------6864
Q gi|255764515|r 361 KIPLLFAHP-ASCGHGLNLQY-GGNILVFFSLWW-DL---------------------------------------EEHQ 398 (458)
Q Consensus 361 ~~~vli~s~-~~~~~GlnL~~-a~~~iI~~~~~w-n~---------------------------------------~~~~ 398 (458)
+.-|||+=. .-.+||||+++ -++.||++.+|| |- ....
T Consensus 678 rGA~LlsV~gGK~SEGIdF~d~~gRAVi~~GiPYPni~d~~~~~~~~~~a~~~~~~~~~~~~~~~qt~~fy~~~aMR~vn 757 (813)
T TIGR00604 678 RGAVLLSVAGGKVSEGIDFSDDLGRAVIMVGIPYPNIFDEEYTESRVLKARLEFLRDQYQIRENSQTKDFYEFDAMRAVN 757 (813)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 87076332044220574454764676899821688875750550187898897753256214567777765558999998
Q ss_pred HHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 45666620220203787752899998589968999999999999999998554137455
Q gi|255764515|r 399 QMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIH 457 (458)
Q Consensus 399 Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~~~~~K~~~~~~~~~~~~~~~~~ 457 (458)
||+||+.|.+ ...-.||.+ |.| |.+...+.++-+.+.+.+.....+
T Consensus 758 Q~~GRviRh~------~Dyg~~~L~------D~R-Y~r~~~r~kLP~Wi~~~i~~~~~~ 803 (813)
T TIGR00604 758 QAIGRVIRHK------DDYGSIVLL------DKR-YARSDKRKKLPKWIQDTIQSSDLN 803 (813)
T ss_pred HHHHHHHCCC------CCCEEEEEE------ECC-CCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8651342278------741268996------122-163323250138888405366776
No 218
>pfam12340 DUF3638 Protein of unknown function (DUF3638). This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.54 E-value=0.012 Score=34.37 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHH---CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 9874789999999996---7980999588998689999999999975999499991604656999999998558888159
Q gi|255764515|r 1 MNLAPHQTKIVDWILD---HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~---~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
+-+||-|.+.+..+.+ +.+.+.-.-||-|||-..+=+++.....|..=+-+++|++++...-.-=-.++...-...+
T Consensus 22 iliR~~Q~~va~~~i~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~Lvr~vvp~~Ll~q~~~~L~~~lggll~r~v 101 (229)
T pfam12340 22 ILIRPVQVDVARAMISPSSGSNSVLQLNMGEGKTSVIVPMVAAVLADGSRLVRVIVPKPLLRQMAQMLQSRLGGLLGREI 101 (229)
T ss_pred CEECHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCEEEHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 65428999999998575578872201120699622437889999748884589982688999999999998642137705
Q ss_pred E
Q ss_conf 9
Q gi|255764515|r 78 S 78 (458)
Q Consensus 78 ~ 78 (458)
.
T Consensus 102 ~ 102 (229)
T pfam12340 102 Y 102 (229)
T ss_pred E
T ss_conf 9
No 219
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.50 E-value=0.011 Score=34.53 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-----CCCCC--CEEEEEECCH
Q ss_conf 9996798099958899868999-99999999759994999916046569999999985-----58888--1599985897
Q gi|255764515|r 13 WILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRW-----SNFSH--MNISVITGTV 84 (458)
Q Consensus 13 ~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf-----~~~~~--~~~~~~~g~~ 84 (458)
-+..++..+|-.++|.|||=.. |+++..=+.. .++|+++=|..+-- +-+..| ....+ +.|.+=..++
T Consensus 13 al~~~~~vvL~APpGAGKsT~~PLaLL~~pW~~-~~kIimLEPRRlAA----R~~A~rlA~~LgE~VG~tVGyRvR~enk 87 (858)
T TIGR01970 13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPWLI-GGKIIMLEPRRLAA----RSAAQRLASQLGEEVGDTVGYRVRLENK 87 (858)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCHHHHH----HHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 861176506416722471105889976626434-88078747447899----9999999997088988620405771132
Q ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCC
Q ss_conf 89888730779869980642023344200011322044045310--0246543115677776654305-98079965840
Q gi|255764515|r 85 KQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPAWE-SERFIELTGTP 161 (458)
Q Consensus 85 ~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgTP 161 (458)
.-..-.+=|+|=--+.+....-=....-++|||||-|. +...- .-+-....-..+... .=++++||||-
T Consensus 88 ------Vs~~TRlEvVTEGiLTRMlQ~DP~L~GVg~liFDEFHERsL~aDL--aLALaLdVQs~LRdDPPLkil~MSATL 159 (858)
T TIGR01970 88 ------VSARTRLEVVTEGILTRMLQDDPELEGVGLLIFDEFHERSLDADL--ALALALDVQSALRDDPPLKILIMSATL 159 (858)
T ss_pred ------CCCCCCEEEEECCHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCEEHHCCCCC
T ss_conf ------587754578723268774016888453523231102243467889--999988533431068640000000263
Q ss_pred HHHHCCCHHHH
Q ss_conf 23100101346
Q gi|255764515|r 162 SPNGLIDLWGQ 172 (458)
Q Consensus 162 i~n~~~el~~l 172 (458)
=..++.+|.+.
T Consensus 160 dg~rLs~LL~~ 170 (858)
T TIGR01970 160 DGERLSSLLPD 170 (858)
T ss_pred HHHHHHHHCCC
T ss_conf 27999974330
No 220
>KOG0740 consensus
Probab=96.49 E-value=0.007 Score=35.71 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999759994999916046569999999985
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRW 69 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf 69 (458)
+..||+.++|+|||+.+.+++.+. .-...=|.|.++. +.|.-|.+|.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLt-sK~~Ge~eK~ 233 (428)
T KOG0740 187 RGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLT-SKYVGESEKL 233 (428)
T ss_pred CHHHEECCCCCCHHHHHHHHHHHH----CCEEEECCHHHHH-HHCCCHHHHH
T ss_conf 111200589884479999998620----6657630688865-3246707789
No 221
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.047 Score=30.67 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
+|+...-|+|||-+|-.++..|+-..... -.|.....+ ..+|.. ....++.-+...+....+-
T Consensus 41 ylf~G~rGvGKTt~Ari~Ak~lNC~~~~~---~~pCg~C~~--C~~i~~---g~~~D~~EiDaAs~~~vdd--------- 103 (704)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVCQS--CTQIDA---GRYVDLLEIDAASNTGIDN--------- 103 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCCCHH--HHHHHC---CCCCCEEEEECCCCCCHHH---------
T ss_conf 75027898788899999999967999999---997877776--787855---8998747742454458899---------
Q ss_pred ECCCCHHHHHHHC---CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 8064202334420---001132204404531002465431156777766543-059807996584
Q gi|255764515|r 100 INFENLGWLVQEL---KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~---~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgT 160 (458)
++.+.+.. -...+|+..||||+|.+.+ ..+.++.|.- .-..+++++=+|
T Consensus 104 -----~R~l~~~~~y~P~~~~yKVyiiDEvhmLs~-------~afNAlLKtLEEPP~~v~FilaT 156 (704)
T PRK08691 104 -----IREVLENAQYAPTAGKYKVYIIDEVHMLSK-------SAFNAMLKTLEEPPEHVKFILAT 156 (704)
T ss_pred -----HHHHHHHCCCCCCCCCEEEEEEECHHHCCH-------HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf -----999998534688678535999831544389-------99999998614797560899854
No 222
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.032 Score=31.66 Aligned_cols=113 Identities=16% Similarity=0.089 Sum_probs=54.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
+|+...-|+|||-+|=.++..|+-..... -.|.....+ ..+|.. ...+++.-+.+.+....+-
T Consensus 41 ylf~G~rGvGKTt~ARi~Ak~lNC~~~~~---~~pcg~C~~--C~~i~~---g~~~d~~EiDaAs~~~vdd--------- 103 (717)
T PRK08853 41 YLFSGTRGVGKTTIGRLFAKGLNCETGIT---STPCGQCAT--CKEIDE---GRFVDLLEIDAASRTKVED--------- 103 (717)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCCCCC--HHHHHC---CCCCCEEEECCCCCCCHHH---------
T ss_conf 76108898889899999999867899999---997888702--676744---7877524540565678899---------
Q ss_pred ECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCCC
Q ss_conf 806420233442---00011322044045310024654311567777665430-598079965840
Q gi|255764515|r 100 INFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW-ESERFIELTGTP 161 (458)
Q Consensus 100 ~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~-~~~~~l~LTgTP 161 (458)
++-+.+. .-...+|+..||||+|.+.+ ..++++.|.-. -..++.++=||-
T Consensus 104 -----~rel~~~~~y~p~~~~yKvyiiDEvHmls~-------~afnAlLKtlEEPP~hv~FilaTT 157 (717)
T PRK08853 104 -----TRELLDNVQYKPARGRFKVYLIDEVHMLSR-------HSFNALLKTLEEPPEYVKFLLATT 157 (717)
T ss_pred -----HHHHHHHCCCCCCCCCEEEEEEECHHHCCH-------HHHHHHHHHHCCCCCCEEEEEECC
T ss_conf -----999998555488778547999830544389-------999999876037875648998438
No 223
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=96.40 E-value=0.0084 Score=35.21 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9874789999999996798099958899868999999999997
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHL 43 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~ 43 (458)
++|.|-|.+||+++ .|=||+.+.=|+|||-.-+.=|.+|..
T Consensus 2 ~~LNp~Q~~AV~Y~--~GPlLVLAGAGSGKT~VI~~KIayLi~ 42 (677)
T TIGR01074 2 SKLNPQQQEAVEYV--GGPLLVLAGAGSGKTRVITNKIAYLIQ 42 (677)
T ss_pred CCCCHHHHHHHHHH--CCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 88874379999861--587146517777863578889999875
No 224
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.40 E-value=0.037 Score=31.34 Aligned_cols=125 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred HHHHHHHH---HHCC---CEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999999---9679---80999-58899868999999999997599949999160465699999999855888815999
Q gi|255764515|r 7 QTKIVDWI---LDHK---RCAIW-ASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 7 Q~~~v~~~---~~~~---~~ll~-~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
|.-.|.-| +.++ .+.|+ .+=|+|||=+|=.+|..|+=.+... -|-+.-.+ ..||. ....+++.-
T Consensus 19 Q~~iv~tL~NAi~~~ri~HAYLF~GpRGtGKTS~ARIfAKaLNC~~~~~----~PCn~C~~--C~~i~---~g~~~DviE 89 (363)
T TIGR02397 19 QEHIVKTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQGPDG----EPCNECES--CKEIN---SGSSLDVIE 89 (363)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCH--HHHHH---CCCCCCEEE
T ss_conf 1799999999997189662345028599763558999999865887877----87777502--27765---289866688
Q ss_pred EECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEE
Q ss_conf 8589789888730779869980642023344200---0113220440453100246543115677776654305-98079
Q gi|255764515|r 80 ITGTVKQRTKVLKTPAVLYVINFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFI 155 (458)
Q Consensus 80 ~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l 155 (458)
+.|.+..-.+ -++.+.+... ...+|..=||||+|.+ ++.+++++.|.-.. +++++
T Consensus 90 iDAASN~gVD--------------~IR~l~e~v~y~P~~~kYKvYIIDEVHML-------S~~AFNALLKTLEEPP~hV~ 148 (363)
T TIGR02397 90 IDAASNNGVD--------------DIRELRENVKYAPSKGKYKVYIIDEVHML-------SKSAFNALLKTLEEPPEHVV 148 (363)
T ss_pred ECCCCCCCHH--------------HHHHHHHHHCCCCCCCCCCEEEEECCCCC-------CHHHHHHHHHHHCCCCCCEE
T ss_conf 6486568788--------------99999873036875544335887323028-------65689998765227987628
Q ss_pred EECCCC
Q ss_conf 965840
Q gi|255764515|r 156 ELTGTP 161 (458)
Q Consensus 156 ~LTgTP 161 (458)
+.=||.
T Consensus 149 FIlATT 154 (363)
T TIGR02397 149 FILATT 154 (363)
T ss_pred EEEECC
T ss_conf 887348
No 225
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.039 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=23.6
Q ss_pred HHHHHHHH---HHCC---C-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999999---9679---8-09995889986899999999999
Q gi|255764515|r 7 QTKIVDWI---LDHK---R-CAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 7 Q~~~v~~~---~~~~---~-~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
|..++..+ +..+ . .|+..+-|+|||..|.+++..+.
T Consensus 9 q~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll 51 (313)
T PRK05564 9 HENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKIL 51 (313)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 2999999999998799875043279998509999999999982
No 226
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.19 E-value=0.027 Score=32.16 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=24.4
Q ss_pred CEEECCCCCCCCCCCCCCHH--HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 20440453100246543115--67777665430598079965840
Q gi|255764515|r 119 ATIVVDESTKLKSFRLRQGS--KTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 119 ~~iIiDEaH~lkn~~~~~~s--~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
.+||+||||++=+.+..... .....+...+...--++++|=-|
T Consensus 72 ~liViDE~~~~~~~r~~~~~~~~~i~~l~~HRH~G~DiiliTQ~~ 116 (183)
T pfam05707 72 ALLVIDEAQTWFPSRRGGDKVPPVLDAFSTHRHLGWDIILITQNP 116 (183)
T ss_pred CEEEEECCHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCH
T ss_conf 799998976554887778888389999998077882089991897
No 227
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.082 Score=29.21 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 968999999999999999998554137
Q gi|255764515|r 428 TIDELVLQRLRTKSTIQDLLLNALKKE 454 (458)
Q Consensus 428 tide~i~~~~~~K~~~~~~~~~~~~~~ 454 (458)
.|=+.|.. .....+.+.++++..+.
T Consensus 383 ~VPeDi~~--a~~~~l~~~~l~g~~~~ 407 (412)
T PRK05703 383 RVPDDIKV--ATPEELVRLALGGFLKC 407 (412)
T ss_pred CCHHHHHC--CCHHHHHHHHHCCCCCC
T ss_conf 97243422--89999999985875556
No 228
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.076 Score=29.42 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=56.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCH-----HHHHHHHCC
Q ss_conf 099958899868999999999997-59994999916046569999999985588881599985897-----898887307
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTV-----KQRTKVLKT 93 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~-----~~r~~~~~~ 93 (458)
+|+...-|+|||-+|-.++..|+- .|.. -.|.....+ ..+|.. ...+++.-+.+.+ .-|. ++..
T Consensus 41 ylf~G~rG~GKtt~ari~ak~lnc~~~~~----~~pcg~c~~--c~~i~~---g~~~d~~eidaas~~~vd~~re-l~~~ 110 (643)
T PRK07994 41 YLFSGTRGVGKTSIARLLAKGLNCETGIT----ATPCGVCDN--CREIEQ---GRFVDLIEIDAASRTKVEDTRD-LLDN 110 (643)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHH--HHHHHC---CCCCCEEEEECCCCCCHHHHHH-HHHH
T ss_conf 87458998888899999999967999999----997876776--898865---8988758863677788899999-9984
Q ss_pred CCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 798699806420233442000113220440453100246543115677776654305-9807996584
Q gi|255764515|r 94 PAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIELTGT 160 (458)
Q Consensus 94 ~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgT 160 (458)
+.| .-..-+|...||||+|.+.+ ..++++.|.-.. ..++.++=||
T Consensus 111 ------~~y---------~p~~~r~kvyiidEvhmls~-------~afnalLKtlEePp~hv~filaT 156 (643)
T PRK07994 111 ------VQY---------APARGRFKVYLIDEVHMLSR-------HSFNALLKTLEEPPAHVKFLLAT 156 (643)
T ss_pred ------CCC---------CCCCCCEEEEEEECHHHCCH-------HHHHHHHHHHCCCCHHCEEEEEC
T ss_conf ------466---------88778536999722101589-------99999998623786100899860
No 229
>KOG0925 consensus
Probab=96.11 E-value=0.01 Score=34.72 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=25.8
Q ss_pred CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-C-CCEEEEECCCCHHHHCCCHH
Q ss_conf 1322044045310024654311567777665430-5-98079965840231001013
Q gi|255764515|r 116 WPFATIVVDESTKLKSFRLRQGSKTARALAKPAW-E-SERFIELTGTPSPNGLIDLW 170 (458)
Q Consensus 116 ~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~-~-~~~~l~LTgTPi~n~~~el~ 170 (458)
-.|..||+||||.= +-.+.-....+..... + --+++.+|||--......+|
T Consensus 158 ~~y~viiLDeahER----tlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf 210 (699)
T KOG0925 158 GRYGVIILDEAHER----TLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYF 210 (699)
T ss_pred CCCCEEEECHHHHH----HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHC
T ss_conf 53007995316666----678999999999998619881699940601259999870
No 230
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=96.11 E-value=0.031 Score=31.76 Aligned_cols=46 Identities=22% Similarity=0.076 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH--HHHHHHHHCC
Q ss_conf 8899868999999999997599949999160465699--9999998558
Q gi|255764515|r 25 SMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSV--WTSEVQRWSN 71 (458)
Q Consensus 25 ~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~--W~~Ei~kf~~ 71 (458)
+=|+|||..--+++..+... ...+++.||+.+.... .-..+..|+.
T Consensus 2 ~AGTGKS~ll~~i~~~l~~~-~~~v~vtA~TGiAA~~i~gG~TiHs~~g 49 (418)
T pfam05970 2 YGGTGKTFLWNALSARIRSR-GKIVLNVASSGIAALLLPGGRTAHSRFG 49 (418)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCEEEEECCHHHHHHCCCCCEEHHHCCC
T ss_conf 79887999999999999768-9889998968999851699873985269
No 231
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.10 E-value=0.053 Score=30.39 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHH----HC---CCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 478999999999----67---9809995889986899999999999759
Q gi|255764515|r 4 APHQTKIVDWIL----DH---KRCAIWASMGSGKTVSVLTALSYIHLWG 45 (458)
Q Consensus 4 ~p~Q~~~v~~~~----~~---~~~ll~~~~G~GKT~~al~~~~~l~~~~ 45 (458)
|.-|.+.+...+ .+ ++.++..++|+|||.++-.++..+....
T Consensus 35 Re~Ei~~l~~~l~~~l~g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPSNVLILGPPGTGKTTTVKKVFEELEEAA 83 (394)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5999999999999997599998479988999989999999999999746
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.014 Score=33.95 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=7.4
Q ss_pred CCEEEEHHHHHHHHHHHHH
Q ss_conf 8403422236788866410
Q gi|255764515|r 321 AAPIIVAYHFNSDLARLQK 339 (458)
Q Consensus 321 ~~kviif~~~~~~~~~i~~ 339 (458)
|..|+ |......++.+..
T Consensus 211 g~sVi-y~ta~~L~~~l~~ 228 (330)
T PRK06835 211 GKTVI-YRTSDELIENLRE 228 (330)
T ss_pred CCEEE-EEEHHHHHHHHHH
T ss_conf 99499-9629999999999
No 233
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=96.07 E-value=0.093 Score=28.89 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=56.5
Q ss_pred CCEEEEECCCCCHHHH-HHHHHHHHHHCCCCCEEEEECC--HHHHHHH---HHHHHHHCCCCCCEEEEEECCHHHHHHHH
Q ss_conf 9809995889986899-9999999997599949999160--4656999---99999855888815999858978988873
Q gi|255764515|r 18 KRCAIWASMGSGKTVS-VLTALSYIHLWGEKSVLVIAPL--RVAQSVW---TSEVQRWSNFSHMNISVITGTVKQRTKVL 91 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~-al~~~~~l~~~~~~~~LIv~P~--~l~~~~W---~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~ 91 (458)
+.-++...-|+|||.. |+.++...... ..++|++-+. ++-.+.| ...+..+ ++......+.+.-.....
T Consensus 3 r~~v~~GGrgsgKS~~~a~~~i~~~~~~-~~~~l~~r~~~~slr~sv~~~~~~~i~~~----~~~~~~~~~~s~~~i~~~ 77 (387)
T pfam04466 3 RYKVAKGGRGSGKSYHIALKLVLKLLMH-PRTNLVIREVKNTIEDSVFTQLQEALSML----GLDHEFKISKSPIEITVK 77 (387)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHC----CCCCEEEECCCCEEEEEC
T ss_conf 6899990888679999999999999878-98699997556889999999999999976----997348973761489987
Q ss_pred CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCCCHH
Q ss_conf 077986998064202334420001132204404531002465431156777766543-059807996584023
Q gi|255764515|r 92 KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGTPSP 163 (458)
Q Consensus 92 ~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgTPi~ 163 (458)
.....|.+..-+.. ..+.....++.+.+|||..+.. ....+. +..+. ......+.+|.+|..
T Consensus 78 ~~gs~i~f~G~d~~----~~iks~~~i~~~~~eEa~~~~~---~~~~~l---~~~~r~~~~~~~i~~~~NP~~ 140 (387)
T pfam04466 78 INGSKFLFYGMDDP----AKIKSIKDVSDAWIEEAAEFKT---EDFDQL---IPTIRRPKPGSEIFMSFNPVN 140 (387)
T ss_pred CCCCEEEEEECCCH----HHHHCCCCCEEEEEECHHHCCH---HHHHHH---HHHHCCCCCCEEEEEECCCCC
T ss_conf 89969999857896----8841636614999941244799---899999---988531788719999828999
No 234
>KOG0742 consensus
Probab=96.04 E-value=0.091 Score=28.95 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=9.7
Q ss_pred HHHCCCCCCCHHHHHHHHHH--HCCC
Q ss_conf 41000265334458998764--2458
Q gi|255764515|r 337 LQKAFPQGRTLDKDPCTIQE--WNEG 360 (458)
Q Consensus 337 i~~~~~~g~~~~~r~~~i~~--f~~~ 360 (458)
++++-..+++.+.|. .++. |..|
T Consensus 456 LceRnktymSEaqRs-aLNAlLfRTG 480 (630)
T KOG0742 456 LCERNKTYMSEAQRS-ALNALLFRTG 480 (630)
T ss_pred HHHHCCCCCCHHHHH-HHHHHHHHCC
T ss_conf 987520102588999-9988987625
No 235
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.082 Score=29.24 Aligned_cols=132 Identities=16% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHH---HHCC---CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 98747899999999---9679---80999588998689999999999975999499991604656999999998558888
Q gi|255764515|r 1 MNLAPHQTKIVDWI---LDHK---RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSH 74 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~---~~~~---~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~ 74 (458)
|+|...|-..++.+ ++++ .+.|+.. |.||+-.|..++..+.-...... .|.... ..+.++....+
T Consensus 1 m~~~~~Qp~i~~~l~~~i~~~rl~HAyLf~G-~~Gk~~~A~~~A~~l~C~~~~~~---~pCg~C-----~~C~~i~~~~h 71 (290)
T PRK07276 1 MDLAQKQPKLFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQKEDV---LPCGHC-----RSCRLIEQGDF 71 (290)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHHCCCCCCC---CCCCCC-----HHHHHHHCCCC
T ss_conf 9877878999999999998499650542169-86879999999999818999998---989889-----99999876999
Q ss_pred CEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1599985897898887307798699806420233442000---1132204404531002465431156777766543059
Q gi|255764515|r 75 MNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWES 151 (458)
Q Consensus 75 ~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~ 151 (458)
.++..+....+ .+..+.++.+.+.+.. .-++..+|||+||.+ | ..+..++.|.-...
T Consensus 72 pDv~~i~~~~~-------------~I~vd~IR~l~~~~~~~~~~g~~KV~II~~Ad~m-t------~~AaNaLLK~LEEP 131 (290)
T PRK07276 72 SDVTVIEPQGQ-------------VIKTDTIRELTANFSQSGYEGKRQVFIIKDADKM-H------VNAANSLLKVIEEP 131 (290)
T ss_pred CCCEEECCCCC-------------CCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHC-C------HHHHHHHHHHHCCC
T ss_conf 87137716777-------------5768899999999844561378279997765652-9------99999999970389
Q ss_pred -C--EEEEECCCC
Q ss_conf -8--079965840
Q gi|255764515|r 152 -E--RFIELTGTP 161 (458)
Q Consensus 152 -~--~~l~LTgTP 161 (458)
. +.+++|-.|
T Consensus 132 p~~t~~iLlt~~~ 144 (290)
T PRK07276 132 QSEIYIFLLTNDE 144 (290)
T ss_pred CCCCEEEEEECCH
T ss_conf 8883799887992
No 236
>CHL00181 cbbX CbbX; Provisional
Probab=95.98 E-value=0.1 Score=28.65 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=52.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCC
Q ss_conf 8099958899868999999999997599---9499991604656999999998558888159998589789888730779
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGE---KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPA 95 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~---~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~ 95 (458)
+.++...||+|||-.|-.++..+..-|. ..++-+.+..++. .+.. .+...-...+..
T Consensus 61 h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vve~~r~dLvg-~yvG-----------------~Ta~kt~~~i~~-- 120 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLITVTRDDLVG-QYIG-----------------HTAPKTKEVLKK-- 120 (287)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHCC-CCCC-----------------CCHHHHHHHHHH--
T ss_conf 38887899867999999999999986995589589953588416-3535-----------------216999999996--
Q ss_pred CEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCC--HHHHHHHHHHHHH--CCCEEEEECCCCH
Q ss_conf 86998064202334420001132204404531002465431--1567777665430--5980799658402
Q gi|255764515|r 96 VLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQ--GSKTARALAKPAW--ESERFIELTGTPS 162 (458)
Q Consensus 96 ~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~--~s~~~~~l~~~~~--~~~~~l~LTgTPi 162 (458)
-.-..++|||||.+-+..+.. +......+.+... ..+.++.+.|-|-
T Consensus 121 --------------------a~GGVLfIDEAY~L~~~~~~~dfg~eaidtLl~~me~~~~~lvvI~AGY~~ 171 (287)
T CHL00181 121 --------------------AMGGVLFIDEAYYLYKPDNERDYGAEAIEILLQVMENQRDDLVVIFAGYKD 171 (287)
T ss_pred --------------------CCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf --------------------459879982446535788999837999999999987079988999846789
No 237
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=95.98 E-value=0.0077 Score=35.46 Aligned_cols=13 Identities=0% Similarity=0.153 Sum_probs=5.6
Q ss_pred EEECCCCCHHHHH
Q ss_conf 9958899868999
Q gi|255764515|r 22 IWASMGSGKTVSV 34 (458)
Q Consensus 22 l~~~~G~GKT~~a 34 (458)
|+.+.|.||++..
T Consensus 29 l~G~~~~~l~l~e 41 (348)
T COG1702 29 LFGPTDTNLSLLE 41 (348)
T ss_pred HCCCCCCCHHHHH
T ss_conf 0188985378999
No 238
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.039 Score=31.15 Aligned_cols=111 Identities=19% Similarity=0.152 Sum_probs=52.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEE
Q ss_conf 99958899868999999999997599949999160465699999999855888815999858978988873077986998
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVI 100 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~ 100 (458)
++..+|.+|||-..|-.+..... ...+++|..|+.--... ..++...... ......+.+....
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD~R~~-~~~V~Sr~G~-~~~A~~i~~~~~i-------------- 70 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAIDTRYG-VGKVSSRIGL-SSEAVVIPSDTDI-------------- 70 (201)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCC-CCEEEECCCC-CCCCEECCCHHHH--------------
T ss_conf 99715768635999999999997-59808998525335356-4336531587-6653563875789--------------
Q ss_pred CCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 101 NFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 101 s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
+. .........+.+.|.+||||.+.. ...-.+..+...-...+++.|.
T Consensus 71 ----~~-~i~~~~~~~~~~~v~IDEaQF~~~-------~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 71 ----FD-EIAALHEKPPVDCVLIDEAQFFDE-------ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ----HH-HHHHCCCCCCCCEEEEEHHHHCCH-------HHHHHHHHHHHHCCCEEEEECC
T ss_conf ----99-998513478757899961671897-------8999999998614988999544
No 239
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.97 E-value=0.045 Score=30.80 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 98099958899868999999999997
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHL 43 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~ 43 (458)
++-+|..|+|.|||..+=+++..+..
T Consensus 200 NNpiLvGepGVGKTAIvEGLA~rI~~ 225 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 99758789998899999999999983
No 240
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=95.95 E-value=0.11 Score=28.55 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=42.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE-EEECCH-----HHHHHHH
Q ss_conf 9809995889986899999999999759994999916046569999999985588881599-985897-----8988873
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS-VITGTV-----KQRTKVL 91 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~-~~~g~~-----~~r~~~~ 91 (458)
+|=|+..|+|.|||-++=.+|...-. + .++ |..|. + ...+.++-. .+.|++ .+|.+
T Consensus 230 NNPl~VGEPGVGKTAI~EGLA~~I~~-~-~kv----Pe~Lk-n---------~~IY~LDmG~LLAGTKYRGDFE~RLK-- 291 (774)
T TIGR02639 230 NNPLLVGEPGVGKTAIVEGLAQRIAE-G-QKV----PEVLK-N---------AKIYSLDMGTLLAGTKYRGDFEERLK-- 291 (774)
T ss_pred CCCCEECCCCCCHHHHHHHHHHHHHC-C-CCC----CHHHC-C---------CCEEEECHHHHHHHCCCCCHHHHHHH--
T ss_conf 88720448886448999999998641-5-646----70024-7---------83454043456410245424789999--
Q ss_pred CCCCCEEEECCCCHHHHHHHCCCCCCCC-EEECCCCCCCCCCCC
Q ss_conf 0779869980642023344200011322-044045310024654
Q gi|255764515|r 92 KTPAVLYVINFENLGWLVQELKGTWPFA-TIVVDESTKLKSFRL 134 (458)
Q Consensus 92 ~~~~~i~i~s~e~~~~~~~~~~~~~~~~-~iIiDEaH~lkn~~~ 134 (458)
....++.. .+-. .|-|||-|.|=+.++
T Consensus 292 ---------------~V~~Ei~~-~~~anILFIDEIHTIVGAGA 319 (774)
T TIGR02639 292 ---------------AVVSEIEK-EPNANILFIDEIHTIVGAGA 319 (774)
T ss_pred ---------------HHHHHHHC-CCCCCEEEEECCCCEEECCC
T ss_conf ---------------99999852-89995466411010331787
No 241
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.11 Score=28.50 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCE
Q ss_conf 099958899868999999999997599--949999160465699999999855888815999858978988873077986
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGE--KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVL 97 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~--~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i 97 (458)
+|+...=|.|||-+|=.++..|+-.+. ..-.--.|.+...+ ..||.. ...+++.-+.+.+....+.
T Consensus 41 ylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~--C~~i~~---g~~~d~~EiDaas~~~v~~------- 108 (721)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA--CTEIDA---GRFVDYIEMDAASNRGVDE------- 108 (721)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--HHHHHC---CCCCCEEEEECCCCCCHHH-------
T ss_conf 7502799888989999999997689986678987887877654--687756---8987647743676788899-------
Q ss_pred EEECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 99806420233442---0001132204404531002465431156777766543-059807996584
Q gi|255764515|r 98 YVINFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGT 160 (458)
Q Consensus 98 ~i~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgT 160 (458)
++.+.+. .-..-+|+.-||||+|.+.+ ..++++.|.- .-..++.++=||
T Consensus 109 -------~r~l~~~~~y~P~~~~~KvyiiDevhmls~-------~afnalLKtlEePP~hv~FilaT 161 (721)
T PRK12323 109 -------MAQLLDQAVYAPTAGRFKVYMIDEVHMLTN-------HAFNAMLKTLEEPPPHVKFILAT 161 (721)
T ss_pred -------HHHHHHHCCCCCCCCCEEEEEEECCCCCCH-------HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf -------999998545588766446999854000589-------99999998401797553899943
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.12 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHC----CC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 747899999999967----98-09995889986899999999999
Q gi|255764515|r 3 LAPHQTKIVDWILDH----KR-CAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~----~~-~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
+||||...-+.+... +. .|+..+-|+||.-.|..++..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~ll 46 (342)
T PRK06964 2 IYPWQTDDWNRLQALRARWPHALLLHGQAGIGKLAFAQHLAQGLL 46 (342)
T ss_pred CCCCCHHHHHHHHHCCCCHHEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 988556999999980687130576579998679999999999983
No 243
>KOG0737 consensus
Probab=95.84 E-value=0.046 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=27.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999759994999916046569999999985
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRW 69 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf 69 (458)
.+.||..++|+|||..|-+.+.. .|...+=|-+ +.+.+-|..|-+|.
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Ake---aga~fInv~~--s~lt~KWfgE~eKl 174 (386)
T KOG0737 128 KGILLYGPPGTGKTMLAKAIAKE---AGANFINVSV--SNLTSKWFGEAQKL 174 (386)
T ss_pred CCCEECCCCCCHHHHHHHHHHHH---CCCCCCEEEC--CCCCHHHHHHHHHH
T ss_conf 43051189982188999999987---2797100013--65532667778889
No 244
>PRK04296 thymidine kinase; Provisional
Probab=95.84 E-value=0.056 Score=30.23 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=26.2
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99958899868999999999997599949999160
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
++..+|.+|||-..|..+..+... .++++++.|.
T Consensus 6 ~i~GpMfSGKTteLi~~~~~~~~~-gkkvl~~kp~ 39 (197)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEER-GMKVLVFTPA 39 (197)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEEEC
T ss_conf 999342788899999999999987-9959999853
No 245
>KOG0739 consensus
Probab=95.81 E-value=0.068 Score=29.71 Aligned_cols=103 Identities=15% Similarity=0.208 Sum_probs=53.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEE
Q ss_conf 80999588998689999999999975999499991604656999999998558888159998589789888730779869
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLY 98 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~ 98 (458)
+.||+.++|+||++.|=+.+.. ......-|. .|-+.+.|.-|-+|.. .+++
T Consensus 168 giLLyGPPGTGKSYLAKAVATE----AnSTFFSvS-SSDLvSKWmGESEkLV-----------------knLF------- 218 (439)
T KOG0739 168 GILLYGPPGTGKSYLAKAVATE----ANSTFFSVS-SSDLVSKWMGESEKLV-----------------KNLF------- 218 (439)
T ss_pred EEEEECCCCCCHHHHHHHHHHH----CCCCEEEEE-HHHHHHHHHCCHHHHH-----------------HHHH-------
T ss_conf 5788679997577999998741----477068730-1788998732179999-----------------9999-------
Q ss_pred EECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH--------HHHHCCCEEEEECCCCH
Q ss_conf 98064202334420001132204404531002465431156777766--------54305980799658402
Q gi|255764515|r 99 VINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALA--------KPAWESERFIELTGTPS 162 (458)
Q Consensus 99 i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~--------~~~~~~~~~l~LTgTPi 162 (458)
+.-. ..+...|.|||...+.+.++...|..+|.+. ........++.|-||-+
T Consensus 219 -----------emAR-e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739 219 -----------EMAR-ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred -----------HHHH-HCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf -----------9987-34994798634444326887771177777777888764066658886489723788
No 246
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.1 Score=28.68 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHC----CCE-EEEECCCCCHHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHHHHHHCCCC
Q ss_conf 747899999999967----980-9995889986899999999999759----9949999160465699999999855888
Q gi|255764515|r 3 LAPHQTKIVDWILDH----KRC-AIWASMGSGKTVSVLTALSYIHLWG----EKSVLVIAPLRVAQSVWTSEVQRWSNFS 73 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~----~~~-ll~~~~G~GKT~~al~~~~~l~~~~----~~~~LIv~P~~l~~~~W~~Ei~kf~~~~ 73 (458)
+||||...-..+... +.+ |+..+.|.||+-.|..++..+.=.. ..+. =-|+ .+..|....
T Consensus 2 iypW~~~~w~~l~~~~~rl~HA~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~C-g~C~----------sC~~~~~g~ 70 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFVGKKGTGKTAFARFAAKALLCETPAPGCKPC-GECM----------SCHLFGQGS 70 (325)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCH----------HHHHHHCCC
T ss_conf 88745799999998344501179757999978999999999998289998889989-8888----------899986599
Q ss_pred CCEEEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCC---CCCCCEEECCCCCCC
Q ss_conf 81599985897898887307798699806420233442000---113220440453100
Q gi|255764515|r 74 HMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKG---TWPFATIVVDESTKL 129 (458)
Q Consensus 74 ~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~---~~~~~~iIiDEaH~l 129 (458)
+.++..+.-......+ ......|..+.++.+.+.... .-.+..+|||+||.+
T Consensus 71 HPD~~~i~p~~~~~~~----g~~~~~I~idqiR~l~~~~~~~~~~~~~kV~ii~~ae~m 125 (325)
T PRK08699 71 HPDFYEITPLADEPEN----GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESM 125 (325)
T ss_pred CCCEEEEECCCCCCCC----CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHH
T ss_conf 9996885134453001----665566769999999999710865689469998577775
No 247
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.69 E-value=0.036 Score=31.38 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=18.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
Q ss_conf 809995889986899999999999759994999916046569999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWT 63 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~ 63 (458)
+.||..++|+|||+.|=+++... ..+.+-|.+..++ +.|.
T Consensus 168 GvLLyGPPGtGKTllAkAvA~e~----~~~fi~v~~s~l~-sk~v 207 (390)
T PRK03992 168 GVLLYGPPGTGKTLLAKAVAHET----NATFIRVVGSELV-QKFI 207 (390)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEEEEHHHHH-HCCC
T ss_conf 27868989997899999999874----8887996679975-2454
No 248
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.68 E-value=0.058 Score=30.14 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
++.+|..|+|.|||..+=+++..+.
T Consensus 195 NNpiLVGepGVGKTAIvEGLA~rI~ 219 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CCCCEECCCCCCHHHHHHHHHHHHH
T ss_conf 8972127999879999999999986
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.65 E-value=0.062 Score=29.94 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
Q ss_conf 80999588998689999999999975999499991604656
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ 59 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~ 59 (458)
+.++..++|+|||..|.+++..+...|. +++.++-..++.
T Consensus 98 gLlF~G~~GTGKThLA~aIan~Li~~G~-sVlf~t~~dLl~ 137 (242)
T PRK07952 98 SFIFSGKPGTGKNHLAAAICNELLLRGK-SVLIITVADIMS 137 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEHHHHHH
T ss_conf 1799789999789999999999998799-499977999999
No 250
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.079 Score=29.31 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=27.3
Q ss_pred CCCHHHHHHH---HHHHHC---CC-EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8747899999---999967---98-099958899868999999999997
Q gi|255764515|r 2 NLAPHQTKIV---DWILDH---KR-CAIWASMGSGKTVSVLTALSYIHL 43 (458)
Q Consensus 2 ~L~p~Q~~~v---~~~~~~---~~-~ll~~~~G~GKT~~al~~~~~l~~ 43 (458)
++.|+|...- .|.... +. .|+..++|+|||-.|.+++..+.-
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6433235899999999865888761003799999789999999999658
No 251
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=95.63 E-value=0.042 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf 099958899868999999999997599949999160465
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA 58 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~ 58 (458)
.||..++|+|||..|-+++..+ ..+++.|.+..+.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~----~~~~~~v~~~~~~ 35 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL----GAPFIEISGSELV 35 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHH----CCCCEECCCCCCC
T ss_conf 9878999999999999999997----8985332420122
No 252
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=95.61 E-value=0.14 Score=27.84 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=55.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
+|+...=|.|||-+|=.++..|+-... .--.|.+...+ ..||. ....+++.-+.+.+....+-
T Consensus 41 ~l~~g~rg~gkt~~ar~~ak~lnc~~~---~~~~pc~~c~~--c~~i~---~~~~~d~~e~d~as~~~v~~--------- 103 (705)
T PRK05648 41 YLFTGTRGVGKTTIARIIAKCLNCETG---VSSTPCGECSV--CREID---EGRFVDLIEVDAASRTKVED--------- 103 (705)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCC---CCCCCCCCCHH--HHHHH---CCCCCCEEEECCCCCCCHHH---------
T ss_conf 650078988898999999998677899---98897877600--46662---48977634451554478899---------
Q ss_pred ECCCCHHHHHHH--C-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCC
Q ss_conf 806420233442--0-0011322044045310024654311567777665430-59807996584
Q gi|255764515|r 100 INFENLGWLVQE--L-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW-ESERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~--~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~-~~~~~l~LTgT 160 (458)
++-+.+. + -..-+|+..||||+|.+.+ ..++++.|.-. -..++.++=||
T Consensus 104 -----~r~~~~~~~~~p~~~~~kv~~idevhmls~-------~~fnallktleepp~~v~f~~at 156 (705)
T PRK05648 104 -----TRELLDNVQYAPTRGRYKVYLIDEVHMLSS-------HSFNALLKTLEEPPPHVKFLLAT 156 (705)
T ss_pred -----HHHHHHHCCCCCCCCCEEEEEEEHHHHCCH-------HHHHHHHHHCCCCCCCEEEEEEC
T ss_conf -----999998555177677457999842654179-------99999987404797545999842
No 253
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.58 E-value=0.022 Score=32.73 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCC--CEEEEE
Q ss_conf 874789999999996798099958899868999999999997-5999--499991
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHL-WGEK--SVLVIA 53 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~-~~~~--~~LIv~ 53 (458)
.|.|-|.+||... .+..++.+..|+|||-+...-+.+|.. .+.. .+|+|+
T Consensus 9 ~LN~~Q~~AV~~~--~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalT 61 (722)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVT 61 (722)
T ss_pred HCCHHHHHHHCCC--CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 2699999998099--9987999738715999999999999982999878828984
No 254
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.15 Score=27.64 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=54.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEE
Q ss_conf 099958899868999999999997-5999499991604656999999998558888159998589789888730779869
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLY 98 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~ 98 (458)
+|+...=|.|||-+|=.++..|+- .|.. -.|.+...+ ..||.. ...+++.-+.+.+....+-.
T Consensus 41 ylf~g~rg~gktt~ari~ak~lnc~~~~~----~~pcg~c~~--c~~i~~---g~~~d~~eidaas~~~v~~~------- 104 (696)
T PRK06872 41 YLFSGTRGVGKTSIARLFAKGLNCVHGVT----ATPCGECEN--CKAIEE---GNFIDLIEIDAASRTKVEDT------- 104 (696)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHH--HHHHHC---CCCCCEEEEECCCCCCHHHH-------
T ss_conf 75117898888899999999867899999----997888622--576744---78775467505655788999-------
Q ss_pred EECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 9806420233442---0001132204404531002465431156777766543-059807996584
Q gi|255764515|r 99 VINFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGT 160 (458)
Q Consensus 99 i~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgT 160 (458)
+-+.+. .-..-+|+.-||||+|.+.+ ..++++.|.- .-..++.++=||
T Consensus 105 -------r~l~~~~~~~p~~~~~kvy~idevhmls~-------~~fnallktleepp~~v~f~lat 156 (696)
T PRK06872 105 -------RELLDNVQYKPVVGRFKVYLIDEVHMLSR-------HSFNALLKTLEEPPEYVKFLLAT 156 (696)
T ss_pred -------HHHHHHCCCCCCCCCEEEEEEEHHHHCCH-------HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf -------99998454577677547999700544389-------99999987502797544899843
No 255
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.06 Score=30.04 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHH----HC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 478999999999----67---9809995889986899999999999759994
Q gi|255764515|r 4 APHQTKIVDWIL----DH---KRCAIWASMGSGKTVSVLTALSYIHLWGEKS 48 (458)
Q Consensus 4 ~p~Q~~~v~~~~----~~---~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~ 48 (458)
|.-|.+.+...+ .+ .+.++...+|+|||.++-..+..+...-...
T Consensus 22 Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~ 73 (366)
T COG1474 22 REEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV 73 (366)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 4889999999999985589986079988999873289999999997331567
No 256
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.16 Score=27.47 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHHHHHH---HHCC----CEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999999---9679----80999588998689999999999975
Q gi|255764515|r 7 QTKIVDWI---LDHK----RCAIWASMGSGKTVSVLTALSYIHLW 44 (458)
Q Consensus 7 Q~~~v~~~---~~~~----~~ll~~~~G~GKT~~al~~~~~l~~~ 44 (458)
|..+++.+ +..+ ..++..+-|+||+..|..++..+.-.
T Consensus 9 q~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~ 53 (314)
T PRK07399 9 QPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQ 53 (314)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 499999999999859967448778999832999999999998578
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.48 E-value=0.16 Score=27.43 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=27.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCHHHH
Q ss_conf 0999588998689999999999975999499991----604656
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA----PLRVAQ 59 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~----P~~l~~ 59 (458)
.|+..++|+|||..|+-++......| .++|.++ |..++.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~g-e~~lyis~eE~~~~l~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHH
T ss_conf 15876899999999999999998769-97899995079999999
No 258
>PRK06921 hypothetical protein; Provisional
Probab=95.43 E-value=0.068 Score=29.73 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=11.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 0999588998689999999999975
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLW 44 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~ 44 (458)
.++..++|+|||..+.+++..|...
T Consensus 119 l~f~G~~G~GKThLa~aIa~~Ll~~ 143 (265)
T PRK06921 119 IALLGQPGSGKTHLLTAAANELMRK 143 (265)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 7997289898899999999999996
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.41 E-value=0.026 Score=32.28 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=27.2
Q ss_pred EEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCC
Q ss_conf 0342223678886641000265334458998764245885589984422111
Q gi|255764515|r 323 PIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 374 (458)
Q Consensus 323 kviif~~~~~~~~~i~~~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~ 374 (458)
.-++|.++...+..+...|.+++..+ .++.+. ++++|++- +-|+|
T Consensus 186 ~~v~~v~~p~~~~~lK~s~~d~s~~~----~i~~~k--~~~vLiLD-DiGaE 230 (306)
T PRK08939 186 VSSTLVHFPEFIRELKNAISDGSVKE----KIDAVK--EAPVLMLD-DIGAE 230 (306)
T ss_pred CEEEEEEHHHHHHHHHHHHCCCCHHH----HHHHHH--CCCEEEEE-CCCCC
T ss_conf 92999875999999999864898899----999984--49989984-44654
No 260
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.37 E-value=0.093 Score=28.89 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=44.9
Q ss_pred CHHHHHHCCCCCEEEEHHHHHHH---HHHHHH-----CCCCCCCHHHHHHHHH----HHCCCCCCEEEEEHHHCCCCCCC
Q ss_conf 25665412488403422236788---866410-----0026533445899876----42458855899844221116220
Q gi|255764515|r 311 ALEVIIEKANAAPIIVAYHFNSD---LARLQK-----AFPQGRTLDKDPCTIQ----EWNEGKIPLLFAHPASCGHGLNL 378 (458)
Q Consensus 311 ~l~~il~~~~~~kviif~~~~~~---~~~i~~-----~~~~g~~~~~r~~~i~----~f~~~~~~vli~s~~~~~~GlnL 378 (458)
.+.++++...| -.+.|+.+..+ .+.+.. .+.+|. ..|...++ +|++++..||+++ .+-.||+|+
T Consensus 526 ~i~~~~~~~~g-~LVLFtS~~~l~~v~~~l~~~~~~~ll~Qg~--~~r~~ll~~f~~~~~~~~~svLlGt-~SFwEGVD~ 601 (697)
T PRK11747 526 YLPELLEGHKG-SLVLFSSRRQMQKVADLLPGDLRLLLLVQGE--QPRQELLEKHKKRVDEGEGSVLFGL-QSFAEGLDL 601 (697)
T ss_pred HHHHHHHHCCC-EEEEECHHHHHHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEEC
T ss_conf 99999985698-4999501999999999876634883899568--6599999999998616898299967-531266136
Q ss_pred CC-CCCEEEEECCCCC
Q ss_conf 01-7859999089989
Q gi|255764515|r 379 QY-GGNILVFFSLWWD 393 (458)
Q Consensus 379 ~~-a~~~iI~~~~~wn 393 (458)
.. +...||..-+||.
T Consensus 602 pG~~L~~VII~kLPF~ 617 (697)
T PRK11747 602 PGDYLTQVIITKIPFA 617 (697)
T ss_pred CCCCEEEEEEECCCCC
T ss_conf 9878789999748999
No 261
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.36 E-value=0.03 Score=31.89 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHCC-CCCCEEEEEHHHCCCCCCCCC-CCCEEEEECCCCCH
Q ss_conf 00265334458998764245-885589984422111622001-78599990899898
Q gi|255764515|r 340 AFPQGRTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQY-GGNILVFFSLWWDL 394 (458)
Q Consensus 340 ~~~~g~~~~~r~~~i~~f~~-~~~~vli~s~~~~~~GlnL~~-a~~~iI~~~~~wn~ 394 (458)
.|.++....+...++++|.+ ++.-||++. ...+||||+.. .++.+|...+|+-+
T Consensus 26 if~E~~~~~~~~~~l~~f~~~~~~avL~~v-g~~sEGIDf~~d~~r~vii~glPfp~ 81 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLAT-ARFSEGVDFPGDYLRAVIIDGLPFPY 81 (141)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEE-CCCCCCEECCCCCEEEEEEECCCCCC
T ss_conf 998699922499999999983688099970-34334420598455699994478899
No 262
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.21 E-value=0.2 Score=26.90 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=19.6
Q ss_pred HHHHHC---CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 999967---98099958899868999999999
Q gi|255764515|r 12 DWILDH---KRCAIWASMGSGKTVSVLTALSY 40 (458)
Q Consensus 12 ~~~~~~---~~~ll~~~~G~GKT~~al~~~~~ 40 (458)
..+++. +.+++..++|+|||-.|-.++..
T Consensus 29 ~~~i~~~~~~s~Il~GPPG~GKTTlA~iiA~~ 60 (417)
T PRK13342 29 RRMIEAGRLSSMILWGPPGTGKTTLARIIAGA 60 (417)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99997699975998896999899999999998
No 263
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=95.20 E-value=0.11 Score=28.35 Aligned_cols=133 Identities=21% Similarity=0.160 Sum_probs=56.7
Q ss_pred EECCCCCHHHHHHHHH-HHHHHCCCCCEEEEECCH--HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 9588998689999999-999975999499991604--6569999999985588881599985897898887307798699
Q gi|255764515|r 23 WASMGSGKTVSVLTAL-SYIHLWGEKSVLVIAPLR--VAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 23 ~~~~G~GKT~~al~~~-~~l~~~~~~~~LIv~P~~--l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
....|+|||..+...+ ......+..+.+|++|+. +....| ..+....+. ...+... ...+.. -.+.....+.+
T Consensus 3 ~ggr~~GKT~~~~~~~~~~a~~~~~~~~~i~~~t~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~-i~~~nGs~i~~ 78 (380)
T pfam03237 3 LGSRQSGKTFAFAREALRHALGNGPKNQIILSASKAQARLEFK-KGIIEIAGD-LLEITFE-EKNGNP-IILPNGAKLYF 78 (380)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH-HHHHHHHHH-HCCCCEE-ECCCCE-EEECCCCEEEE
T ss_conf 2645252839999999999985899728999799999999999-999996688-6387167-278873-99159988999
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 806420233442000113220440453100246543115677776654305980799658402310
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNG 165 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~ 165 (458)
.+.+.-... +. .-...++.+++||+-.+.+.. .+......... ......+.+|-||-+++
T Consensus 79 ~~~~~~~~~-~~-~rG~~~~~i~~DE~a~~~~~~---~~~~~~~~~~~-~~~~~~~~~stp~~~~~ 138 (380)
T pfam03237 79 LGLESETTA-QG-YRGASIAGIYFDEATWLPKFQ---ESELVRRLRAT-KGKWRKTFFSTPPSPGH 138 (380)
T ss_pred EECCCCCCH-HH-CCCCCCCEEEEEEHHHCCCHH---HHHHHHHHHCC-CCCCCEEEEECCCCCCC
T ss_conf 625776643-10-348545549983045366278---99998644104-79975799988989985
No 264
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.17 E-value=0.071 Score=29.59 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
.+-+|..++|.|||..+=+++..+.
T Consensus 209 NNPiLVGepGVGKTAIvEGLA~rI~ 233 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9974657999879999999999997
No 265
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.2 Score=26.83 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=56.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEE
Q ss_conf 099958899868999999999997-5999499991604656999999998558888159998589789888730779869
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLY 98 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~ 98 (458)
+|+...=|+|||-+|=.++..|+- .|.. -.|.....+ ..||.. ...+++.-+.+.+....+-.
T Consensus 41 ~lf~g~rg~gkt~~ar~~a~~lnc~~~~~----~~pc~~c~~--c~~i~~---~~~~d~~e~daas~~~v~~~------- 104 (663)
T PRK08770 41 FLFTGTRGVGKTTIARIFAKSLNCETGTS----ADPCGQCPA--CLDIDA---GRYIDLLEIDAASNTGVDDV------- 104 (663)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC----CCCCCCCHH--HHHHHC---CCCCCEEEEECCCCCCHHHH-------
T ss_conf 76227998888899999999867899999----997877877--898854---89886588646765888999-------
Q ss_pred EECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEECCC
Q ss_conf 9806420233442---0001132204404531002465431156777766543-059807996584
Q gi|255764515|r 99 VINFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA-WESERFIELTGT 160 (458)
Q Consensus 99 i~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~-~~~~~~l~LTgT 160 (458)
+-+.+. .-..-+|+.-||||+|.+.+ ..++++.|.- .-..++.++=||
T Consensus 105 -------r~~~~~~~~~p~~~~~kvy~idevhmls~-------~~fna~lktleepp~~v~f~~at 156 (663)
T PRK08770 105 -------REVIENAQYMPSRGKFKVYLIDEVHMLSK-------AAFNALLKTLEEPPEHVKFLLAT 156 (663)
T ss_pred -------HHHHHHCCCCCCCCCEEEEEEECHHHCCH-------HHHHHHHHHHCCCCCCEEEEEEC
T ss_conf -------99998443588777436999700433289-------99999987402786442899854
No 266
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.13 E-value=0.073 Score=29.52 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=7.8
Q ss_pred CCCCCCEEEEEEEEC
Q ss_conf 378775289999858
Q gi|255764515|r 412 AGFKRAVFVYYLIAQ 426 (458)
Q Consensus 412 ~Gq~~~v~v~~li~~ 426 (458)
-|.+...-||-++.-
T Consensus 433 ~Gy~GR~~I~E~l~~ 447 (500)
T COG2804 433 SGYKGRTGIYEVLEI 447 (500)
T ss_pred CCCCCCCEEEEEEEC
T ss_conf 776786046887507
No 267
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.21 Score=26.72 Aligned_cols=113 Identities=13% Similarity=0.146 Sum_probs=58.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCC
Q ss_conf 09995889986899999999999759----99499991604656999999998558888159998589789888730779
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWG----EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPA 95 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~----~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~ 95 (458)
+++...=|+|||-+|=.++..|+-.+ .+++. .|.....+ ..+|. ...+++|.-+.+.+....+-.
T Consensus 48 ~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~--~~c~~c~~--c~~i~---~~~~~d~~e~daas~~~v~~~---- 116 (600)
T PRK09111 48 FMLTGVRGVGKTTTARILARALNYKGPDGVGGPTI--DPCGVGEH--CQAIM---EGRHVDVIEMDAASHTGVDDI---- 116 (600)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCHH--HHHHH---CCCCCCEEEEECCCCCCHHHH----
T ss_conf 76457898789999999999966988766689988--98998865--89886---689987588515545788899----
Q ss_pred CEEEECCCCHHHHHHH---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEECCC
Q ss_conf 8699806420233442---00011322044045310024654311567777665430-59807996584
Q gi|255764515|r 96 VLYVINFENLGWLVQE---LKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW-ESERFIELTGT 160 (458)
Q Consensus 96 ~i~i~s~e~~~~~~~~---~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~-~~~~~l~LTgT 160 (458)
+.+.+. .-...+|...|+||+|.+. ...+.++.+.-. -..++.+.=||
T Consensus 117 ----------r~~~~~~~~~p~~~~~kv~iidevhmls-------~~afnallktleepp~~~~fi~at 168 (600)
T PRK09111 117 ----------REIIESVRYRPVSARYKVYIIDEVHMLS-------TAAFNALLKTLEEPPPHVKFIFAT 168 (600)
T ss_pred ----------HHHHHHHCCCCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf ----------9999860538877754699960011057-------999999998762598654999962
No 268
>pfam00265 TK Thymidine kinase.
Probab=95.00 E-value=0.069 Score=29.69 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=26.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 999588998689999999999975999499991604
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLR 56 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~ 56 (458)
++..+|-+|||-..|..+..+... .+++|++.|..
T Consensus 5 ~i~GpMfsGKTteLi~~~~~~~~~-gkkvl~i~p~~ 39 (175)
T pfam00265 5 LIIGPMFSGKSTELIRRVYRYQLA-QYKCVVIKYAI 39 (175)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHC-CCEEEEEEECC
T ss_conf 999251778999999999999987-99399994611
No 269
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.00 E-value=0.23 Score=26.53 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=55.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.+++.++|.|||-+..-++..+..++ +++.+|+--+--. -=.+.++.|...-.+.+........- ...
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~-~~V~lit~Dt~R~-gA~eQL~~ya~~l~v~~~~~~~~~d~-~~~--------- 71 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQG-KKVLLVAADTFRA-AAIEQLKQLAERLGVPVFGSGTGSDP-AAV--------- 71 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEECCCCCCH-HHH---------
T ss_conf 99989999988999999999999779-9289997587768-89999999998639817814877787-899---------
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 8064202334420001132204404531002465431156777766543059807996584023100
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGL 166 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~ 166 (458)
+..-.+. .....+|+|+||=+=+- +.....-...+.+..........+.|+||--+...
T Consensus 72 -----~~~~l~~-~~~~~~D~IlIDTaGr~--~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~ 130 (196)
T pfam00448 72 -----AFDAVEK-AKAENYDVVLVDTAGRL--QNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNAL 130 (196)
T ss_pred -----HHHHHHH-HHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf -----9999999-88468999999899987--47677899999998522873028998567782137
No 270
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.99 E-value=0.23 Score=26.51 Aligned_cols=36 Identities=28% Similarity=0.115 Sum_probs=26.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 099958899868999999999997599949999160
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
.+++..+|.|||..++.++..+......++++++.-
T Consensus 16 ~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE 51 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999968999999999999999999779959999333
No 271
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.97 E-value=0.046 Score=30.76 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC---CCEEEEECCH
Q ss_conf 74789999999996798099958899868999999999997599---9499991604
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGE---KSVLVIAPLR 56 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~---~~~LIv~P~~ 56 (458)
|.|-|..||- .+..+.|+.+..|+|||-+..+=+.+|...|. ..+|.|+=+.
T Consensus 197 Ln~~Qr~Avi--~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~ 251 (684)
T PRK11054 197 LNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGR 251 (684)
T ss_pred CCHHHHHHEE--ECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCH
T ss_conf 9989995727--479964898338997077999999999975999866778686349
No 272
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.91 E-value=0.078 Score=29.37 Aligned_cols=54 Identities=26% Similarity=0.302 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC-C--CCEEEEECCH
Q ss_conf 987478999999999679809995889986899999999999759-9--9499991604
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWG-E--KSVLVIAPLR 56 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~-~--~~~LIv~P~~ 56 (458)
++|.|-|.+||.+. .+.+++....|+|||-+...-+.++...+ . ..+|.|+=++
T Consensus 1 ~~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTn 57 (655)
T COG0210 1 SKLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTN 57 (655)
T ss_pred CCCCHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEH
T ss_conf 99998999986188--9986999579986189999999999873895757717789676
No 273
>KOG0991 consensus
Probab=94.88 E-value=0.061 Score=30.00 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7980999588998689999999999
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
.++.++..++|+|||-.+.+++..|
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991 48 MPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9866752799986164899999998
No 274
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.88 E-value=0.2 Score=26.85 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 980999588998689999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
.+-+|..|+|.|||..+=.++..+
T Consensus 201 NNpiLvGepGVGKTAIvEGLA~rI 224 (823)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (823)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 885023799987999999999976
No 275
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.87 E-value=0.16 Score=27.54 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=16.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9809995889986899999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALS 39 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~ 39 (458)
+..++..++|+|||-.|-.++.
T Consensus 53 ~S~Il~GPPGtGKTTLA~iIA~ 74 (726)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (726)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 8278889799999999999988
No 276
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=94.86 E-value=0.25 Score=26.30 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=54.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCHHHHHHHHHH---HHHHCCCCCCEEEEEECCHHHHHHHHCCC
Q ss_conf 80999588998689999999999975999499991-604656999999---99855888815999858978988873077
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA-PLRVAQSVWTSE---VQRWSNFSHMNISVITGTVKQRTKVLKTP 94 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~-P~~l~~~~W~~E---i~kf~~~~~~~~~~~~g~~~~r~~~~~~~ 94 (458)
+..++..+|.|||+.|+..+..+...|..-++=.+ |.+ +.+. ++.+...|. +...+.|..
T Consensus 7 kIylG~apGVGKTy~ML~eA~~l~~~G~DVViG~vEthg-----R~eT~~l~~gLe~iP~-~~~~y~g~~---------- 70 (211)
T pfam02702 7 KIFLGAAPGVGKTYAMLSEAHELLERGVDVVIGYVETHG-----RAETAALLEGLEVIPR-KEIEYRGVT---------- 70 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-----CHHHHHHHCCCCCCCC-EEEEECCEE----------
T ss_conf 898535998778999999999999789956999953799-----7899999768766887-125368855----------
Q ss_pred CCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9869980642023344200011322044045310024654311567777665430
Q gi|255764515|r 95 AVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 95 ~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
++-+ +.+..+. .++.++++||--+- |..+....++.+-+..+-.
T Consensus 71 -------~~E~--Dldail~-R~P~vvLVDELAHt-N~pgsr~~KR~qDVeeLL~ 114 (211)
T pfam02702 71 -------LEEM--DLDAILA-RKPQLVLVDELAHT-NAPGSRHEKRWQDVEELLD 114 (211)
T ss_pred -------CCCC--CHHHHHH-CCCCEEEEECCCCC-CCCCCCCCCCHHHHHHHHH
T ss_conf -------3507--9999985-39998998445567-9998888754774999998
No 277
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=94.84 E-value=0.024 Score=32.44 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.7
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9679809995889986899999999999
Q gi|255764515|r 15 LDHKRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 15 ~~~~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
++.-|.+|..+||+|||+.|=++|..|.
T Consensus 150 L~KSNILLiGPTGSGKTLLAqTLA~~L~ 177 (452)
T TIGR00382 150 LSKSNILLIGPTGSGKTLLAQTLARILN 177 (452)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 3006624546888526899999998738
No 278
>TIGR00604 rad3 DNA repair helicase (rad3); InterPro: IPR013020 All proteins in this family for which functions are known are DNA-DNA helicases that function in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. .
Probab=94.78 E-value=0.014 Score=33.79 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=19.7
Q ss_pred HHHHHHHHH---HHHC-CCEEE-----EECCCCCHHH
Q ss_conf 789999999---9967-98099-----9588998689
Q gi|255764515|r 5 PHQTKIVDW---ILDH-KRCAI-----WASMGSGKTV 32 (458)
Q Consensus 5 p~Q~~~v~~---~~~~-~~~ll-----~~~~G~GKT~ 32 (458)
|-|.....- .++. +.+++ -++.|+|||+
T Consensus 18 p~q~~~~~~~~~~Ld~~~~~~~~~E~dE~PsgtgKt~ 54 (813)
T TIGR00604 18 PEQRSYMRDLKRSLDRGDEAILSAEYDEMPSGTGKTI 54 (813)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 4554445777887714765246635565638887400
No 279
>PRK04132 replication factor C small subunit; Provisional
Probab=94.77 E-value=0.038 Score=31.21 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHHH------HCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999999999------679809995889986899999999999
Q gi|255764515|r 7 QTKIVDWIL------DHKRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 7 Q~~~v~~~~------~~~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
|...|..+. +.+..|.|.+||+|||-.|++++..|.
T Consensus 30 QehIVkRLK~YVk~~smPHLLFaGPPGvGKt~~al~lar~l~ 71 (863)
T PRK04132 30 QDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (863)
T ss_pred HHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 499999999886238885443048998771447888888761
No 280
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=94.77 E-value=0.16 Score=27.54 Aligned_cols=45 Identities=24% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHH-HHHCCCCCEEEEEC
Q ss_conf 9999999679-----8099958899868999999999-99759994999916
Q gi|255764515|r 9 KIVDWILDHK-----RCAIWASMGSGKTVSVLTALSY-IHLWGEKSVLVIAP 54 (458)
Q Consensus 9 ~~v~~~~~~~-----~~ll~~~~G~GKT~~al~~~~~-l~~~~~~~~LIv~P 54 (458)
.+.+.+++.+ -.++..++|+|||.-++-++.. ....| .+++.|+-
T Consensus 6 ~~LD~~l~GGi~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~g-e~~lYis~ 56 (231)
T pfam06745 6 PGLDEILKGGIPEGRVVLITGGPGTGKTIFGLQFLYNGALEYG-EPGVYVTL 56 (231)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 5688631699829969999858972599999999999998658-96899981
No 281
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=94.75 E-value=0.19 Score=27.03 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHH----C-----CCEEEEECCCCCHHHHHHHHHH-HHHHCCCC--CEEEEECC
Q ss_conf 789999999996----7-----9809995889986899999999-99975999--49999160
Q gi|255764515|r 5 PHQTKIVDWILD----H-----KRCAIWASMGSGKTVSVLTALS-YIHLWGEK--SVLVIAPL 55 (458)
Q Consensus 5 p~Q~~~v~~~~~----~-----~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~--~~LIv~P~ 55 (458)
|||...+..+.. . ++.++.-+=|-|||..+-+++. .+...+.. -+++++++
T Consensus 1 PwQ~f~i~~ifGw~~~~g~Rrfr~~~i~v~RkNGKS~l~a~i~ly~~~~~ge~~~ei~~~A~~ 63 (473)
T pfam03354 1 PWQKFILGLMFGWRKGCGVRRFREAYVSVGRKNGKSYLMAIRVLYELLLGGKSNQEILVAATT 63 (473)
T ss_pred CCHHHHHHHEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 946156251441892899889999999982686026999999999997099838749999798
No 282
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=94.73 E-value=0.018 Score=33.23 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=22.0
Q ss_pred HHHHHHHHH----------C-CCEEEEECCCCCHHHHHHHHH
Q ss_conf 999999996----------7-980999588998689999999
Q gi|255764515|r 8 TKIVDWILD----------H-KRCAIWASMGSGKTVSVLTAL 38 (458)
Q Consensus 8 ~~~v~~~~~----------~-~~~ll~~~~G~GKT~~al~~~ 38 (458)
.|.|+||.+ - +++||..+|||||||.|=|.+
T Consensus 72 ~EiVdFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvA 113 (505)
T TIGR01241 72 VEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVA 113 (505)
T ss_pred HHHHHHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 313422269637987278898714731787842467887520
No 283
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.094 Score=28.86 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=16.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 98099958899868999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSY 40 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~ 40 (458)
.+.++..++|+|||..+-+.+..
T Consensus 19 ~~v~~~g~~~~~~t~~~~~~a~~ 41 (494)
T COG0464 19 KGVLLHGPPGTGKTLLARALANE 41 (494)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 21000368876503665676512
No 284
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.29 Score=25.93 Aligned_cols=25 Identities=16% Similarity=-0.088 Sum_probs=19.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 0999588998689999999999975
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLW 44 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~ 44 (458)
.|+..+-|+||+-.|..++..+.-.
T Consensus 22 yLf~Gp~G~GK~~~A~~~A~~LLc~ 46 (290)
T PRK05917 22 ILLHGQDLSNLSQYAYELASLILLE 46 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8768999865999999999998578
No 285
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.58 E-value=0.29 Score=25.89 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=23.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 09995889986899999999999759994999916
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
.+++.++|.|||-+..-++..+..++ +++.+|+-
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~-~kV~lit~ 36 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG-KKVLLVAA 36 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEC
T ss_conf 99989999988999999999999769-92899974
No 286
>PRK04328 hypothetical protein; Provisional
Probab=94.55 E-value=0.18 Score=27.20 Aligned_cols=44 Identities=20% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9999999679-----80999588998689999999999975999499991
Q gi|255764515|r 9 KIVDWILDHK-----RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 9 ~~v~~~~~~~-----~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
.+.+.++..+ -.+++.++|+|||.-++-++..-...| .++|.|+
T Consensus 11 ~gLD~lL~GGlp~gs~~Lv~G~pGtGKT~la~qFl~~g~~~G-E~~lyis 59 (250)
T PRK04328 11 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMG-EPGIYVA 59 (250)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 667875159987996999982899998999999999998769-9779999
No 287
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.54 E-value=0.16 Score=27.49 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=28.8
Q ss_pred HHHHCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-----HHHHHHHH
Q ss_conf 9996798--0999588998689999999999975999499991604656-----99999999
Q gi|255764515|r 13 WILDHKR--CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQ-----SVWTSEVQ 67 (458)
Q Consensus 13 ~~~~~~~--~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~-----~~W~~Ei~ 67 (458)
+....++ ..+..++|+|||+..=++.+.+ . +...+.|+.|+..+. +-|..+++
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~-~-~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRRALLASL-N-EDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHHHC-C-CCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 7775178559997447776369999999855-7-8851799835763017889999999840
No 288
>pfam06733 DEAD_2 DEAD_2. This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast.
Probab=94.50 E-value=0.025 Score=32.35 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=23.1
Q ss_pred CCCCCEEEECCCCHHH--HHHHCCCCCCCCEEECCCCCCC
Q ss_conf 0779869980642023--3442000113220440453100
Q gi|255764515|r 92 KTPAVLYVINFENLGW--LVQELKGTWPFATIVVDESTKL 129 (458)
Q Consensus 92 ~~~~~i~i~s~e~~~~--~~~~~~~~~~~~~iIiDEaH~l 129 (458)
....++++++|.-+-. ..+.+....+-..||+||||++
T Consensus 112 ~~~AdiI~~pYnylld~~ir~~l~i~l~~~IvI~DEAHNl 151 (168)
T pfam06733 112 LKDADIIILPYNYLLDPKIRESLKINLKNSIVIFDEAHNI 151 (168)
T ss_pred HHCCCEEEECCHHHCCHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf 8539989966177619999998378758849999881375
No 289
>KOG1807 consensus
Probab=94.48 E-value=0.14 Score=27.82 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECCHHHHHHHHHHHH
Q ss_conf 7478999999999679809995889986899999999999759-----9949999160465699999999
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWG-----EKSVLVIAPLRVAQSVWTSEVQ 67 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~-----~~~~LIv~P~~l~~~~W~~Ei~ 67 (458)
|..-|..|.+.++..+-.++-.++|+|||++.+-+...|.... .-|+||+|-++-..+|.-.-+-
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred ECHHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 0488999998776563211325998772203499999999626554555644664223578999999987
No 290
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.48 E-value=0.23 Score=26.49 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHH-HHHHHHCCCCCEEEEECCHHHHHHHHH
Q ss_conf 96798-099958899868999999-999997599949999160465699999
Q gi|255764515|r 15 LDHKR-CAIWASMGSGKTVSVLTA-LSYIHLWGEKSVLVIAPLRVAQSVWTS 64 (458)
Q Consensus 15 ~~~~~-~ll~~~~G~GKT~~al~~-~~~l~~~~~~~~LIv~P~~l~~~~W~~ 64 (458)
++.++ +++=..+|+|||+-=|.- +.+......++++|=+++-.++.|-.+
T Consensus 13 ~~~~~v~lVEAGTGTGKSLAYLvPAl~~a~~~~g~rVVISTaT~aLQeQL~~ 64 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWS 64 (636)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf 6038489998999710889999999999985799988997987999999976
No 291
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=94.47 E-value=0.044 Score=30.84 Aligned_cols=33 Identities=9% Similarity=-0.060 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 536899888999999851033452022347888875
Q gi|255764515|r 250 PQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKC 285 (458)
Q Consensus 250 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (458)
.|+|.+.|-+.... +..=-.++..+++.|+.-|
T Consensus 311 eP~Qk~~fL~Ai~k---PqGMvLVTGPTGSGKTVSL 343 (577)
T TIGR02538 311 EPDQKALFLEAIHK---PQGMVLVTGPTGSGKTVSL 343 (577)
T ss_pred CHHHHHHHHHHHHC---CCCCEEEECCCCCCHHHHH
T ss_conf 88899999999707---9972886266598416878
No 292
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=94.38 E-value=0.22 Score=26.65 Aligned_cols=127 Identities=18% Similarity=0.292 Sum_probs=69.6
Q ss_pred CCEEEEECC-CCCHHHHHHHHHHHHHHCCCCCEEEEEC----CHHHHHHHHHHHHHHCCCCCCEEEEEECCHH-HHHHHH
Q ss_conf 980999588-9986899999999999759994999916----0465699999999855888815999858978-988873
Q gi|255764515|r 18 KRCAIWASM-GSGKTVSVLTALSYIHLWGEKSVLVIAP----LRVAQSVWTSEVQRWSNFSHMNISVITGTVK-QRTKVL 91 (458)
Q Consensus 18 ~~~ll~~~~-G~GKT~~al~~~~~l~~~~~~~~LIv~P----~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~-~r~~~~ 91 (458)
++.++.-.+ |+|||=|---++..+..+| +++|+.|= +..++ | ++-|.. ...+.++.+... .....
T Consensus 82 p~Vil~VGVNG~GKTTTIaKLA~~l~~~G-k~V~laAgDTFRAAA~E-Q----L~~Wa~--R~gv~vi~~~~gn~DPAa- 152 (284)
T TIGR00064 82 PNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAGDTFRAAAIE-Q----LEVWAK--RLGVDVIKQKEGNADPAA- 152 (284)
T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHH-H----HHHHHH--HHCCEEEECCCCCCCCHH-
T ss_conf 77999984408860102889999998749-90899827524799999-9----999898--838755407889887178-
Q ss_pred CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC--CHHHHHHHHHHHHH-CCCE--EEEECCCCHHHHC
Q ss_conf 07798699806420233442000113220440453100246543--11567777665430-5980--7996584023100
Q gi|255764515|r 92 KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLR--QGSKTARALAKPAW-ESER--FIELTGTPSPNGL 166 (458)
Q Consensus 92 ~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~--~~s~~~~~l~~~~~-~~~~--~l~LTgTPi~n~~ 166 (458)
+=|+++..- ....+|.|+||=|=|+.|...= .-+|-.|.+.+... .+|+ .+.|=||=-+|..
T Consensus 153 --------V~fDAi~~A-----k~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~ 219 (284)
T TIGR00064 153 --------VIFDAIQAA-----KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNAL 219 (284)
T ss_pred --------HHHHHHHHH-----HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHH
T ss_conf --------999989999-----8749978997347545466203999999999873210257875575422022203089
No 293
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.33 E-value=0.24 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=18.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
++-+|..|+|.|||..+=+++..+.
T Consensus 208 NNpiLvGepGVGKTAIvEGLA~rI~ 232 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8960216999869999999999997
No 294
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=94.20 E-value=0.28 Score=26.02 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=63.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH----HHH--HC
Q ss_conf 809995889986899999999999759994999916046569999999985588881599985897898----887--30
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQR----TKV--LK 92 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r----~~~--~~ 92 (458)
-.|+..+.|+||...|..++..+.=...... - |-.. ...+.++....+.+++++.=..... ... -.
T Consensus 16 A~LF~G~~G~Gk~~~A~~~A~~l~C~~~~~~-~--~Cg~-----C~~C~~~~~G~HPD~~~~~P~~~~~~~~~de~~~~~ 87 (216)
T TIGR00678 16 AYLFTGPEGVGKELLALALAKALLCEPRGGG-E--PCGE-----CHSCRLIEAGNHPDLHRLEPEGQSKSLTADEAAEGE 87 (216)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCC-C--CCCC-----CHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 1254448887489999999999807785778-8--8885-----888999870799823787423477777764589762
Q ss_pred C----CCCEEEECCCCHHHHHHHCCCC---CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCC---EEEEECCCC
Q ss_conf 7----7986998064202334420001---1322044045310024654311567777665430598---079965840
Q gi|255764515|r 93 T----PAVLYVINFENLGWLVQELKGT---WPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESE---RFIELTGTP 161 (458)
Q Consensus 93 ~----~~~i~i~s~e~~~~~~~~~~~~---~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~---~~l~LTgTP 161 (458)
. ...--.|..|.++.+.+.+... -.|..||||.|+.| | ...++++.|.-.-.+ +.+++|-+|
T Consensus 88 ~g~a~~~~~~~Ik~dq~R~l~~~~~~~~~~~~~rVviI~~Ae~m-n------~~AANALLKtLEEPp~~t~fiL~~~~~ 159 (216)
T TIGR00678 88 EGSAKRRALPQIKVDQVRELVEFLSLTPQESGRRVVIIEDAERM-N------EAAANALLKTLEEPPPNTLFILITHSP 159 (216)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHC-C------HHHHHHHHHHEECCCCCEEEEEECCCC
T ss_conf 56421136787872789999999860642147517997673232-5------898986510101279870798850888
No 295
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=94.06 E-value=0.18 Score=27.10 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=27.8
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCHH
Q ss_conf 679809995889986899999999999759---994999916046
Q gi|255764515|r 16 DHKRCAIWASMGSGKTVSVLTALSYIHLWG---EKSVLVIAPLRV 57 (458)
Q Consensus 16 ~~~~~ll~~~~G~GKT~~al~~~~~l~~~~---~~~~LIv~P~~l 57 (458)
+.+.+|++..+|+|||...-.++..+.... .-.+.++=|+..
T Consensus 37 ~~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~K~~ 81 (202)
T pfam01580 37 KMPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGG 81 (202)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 688689965899980099999999998737962069999748961
No 296
>PRK09694 hypothetical protein; Provisional
Probab=94.05 E-value=0.29 Score=25.89 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=57.9
Q ss_pred HHHHHC-CCCCEEEEHHHHHHHHHHHHHCCCC------------CCC-----HHHHHHHHHHHC-CCC---CCEEEEEHH
Q ss_conf 665412-4884034222367888664100026------------533-----445899876424-588---558998442
Q gi|255764515|r 313 EVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQ------------GRT-----LDKDPCTIQEWN-EGK---IPLLFAHPA 370 (458)
Q Consensus 313 ~~il~~-~~~~kviif~~~~~~~~~i~~~~~~------------g~~-----~~~r~~~i~~f~-~~~---~~vli~s~~ 370 (458)
..+++. ..|..++|.||.+.....+.+.+.+ +.- ......+++.|- +++ ..|+| .|+
T Consensus 552 ~~l~~~~~~G~~v~vI~NTV~rAq~~y~~L~~~~~~~~~v~L~HsRF~~~DR~~~E~~vl~~~Gk~~~r~~g~IlV-aTQ 630 (878)
T PRK09694 552 ERMIAAANAGAQVCVICNLVDDAQVCYQRLKELNNTQVDIDLFHARFTFNDRREKENRVISNFGKNGKRNVGRILV-ATQ 630 (878)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE-ECC
T ss_conf 9999999789959999388999999999999852899877998688877669999999999868898899986999-773
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCC-CCHHC-CCCCCE
Q ss_conf 2111622001785999908998986864456666202-20203-787752
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVT-RQRQA-GFKRAV 418 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~-r~hR~-Gq~~~v 418 (458)
+....||+ .+ +++| -|+ =-...+.||.||++|. |..|. |...|+
T Consensus 631 VvEQSLDi-Df-D~li-TDL-APiDlLlQR~GRLhRH~R~~RP~g~~~P~ 676 (878)
T PRK09694 631 VVEQSLDL-DF-DWLI-TQH-CPADLLFQRMGRLHRHHRKYRPAGFEIPV 676 (878)
T ss_pred EEEEEECC-CC-CHHH-CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 33243033-53-3011-046-86999998742320589988887777876
No 297
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.39 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=16.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9809995889986899999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALS 39 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~ 39 (458)
...++..++|+|||-.|-.++.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6057778999888899999987
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.66 E-value=0.45 Score=24.76 Aligned_cols=50 Identities=16% Similarity=0.009 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHC---C-CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 747899999999967---9-809995889986899999999999759994999916
Q gi|255764515|r 3 LAPHQTKIVDWILDH---K-RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~---~-~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
++||.. ++.+... + =.+++..+|.|||.-++.++..+..+...+++++..
T Consensus 14 ~~pf~~--LD~~~~Gl~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~Sl 67 (271)
T cd01122 14 WWPFPV--LNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCCCHH--HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 588166--888737999980899996899869999999999999976990899970
No 299
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=93.53 E-value=0.47 Score=24.62 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 74789999999996798-09995889986899999999999759994999916046569999999985588881599985
Q gi|255764515|r 3 LAPHQTKIVDWILDHKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVIT 81 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~ 81 (458)
|=.-|..||.++.+-++ ..+....|+|||.++ .++...+......| +- +.|- -.=.++++.=+
T Consensus 415 Ls~EQ~~Av~hvt~s~~iavVvG~AGtGKSt~L-~aAR~AWe~~Gy~V--~G-AALs-GKAAegLe~~s----------- 478 (888)
T TIGR02768 415 LSEEQKEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAAGYRV--IG-AALS-GKAAEGLEAES----------- 478 (888)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH-HHHHHHHHHCCCEE--EE-HHHH-HHHHHHHHCCC-----------
T ss_conf 458999998753289964899748998766789-99999998739778--71-5455-58988730026-----------
Q ss_pred CCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 89789888730779869980642023344200011322044045310024654311567777665430598079965840
Q gi|255764515|r 82 GTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 82 g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
|....-...|. +.| .+.......-|.+|||||=.+ ...++.+.| +.+.++--++.|=|=|
T Consensus 479 GI~SRTLASle------------~aW-~~G~d~L~~~dvLviDEAGMV------~S~Qm~r~l-~~A~~AGaKvVLvGD~ 538 (888)
T TIGR02768 479 GIESRTLASLE------------YAW-ANGRDLLEDKDVLVIDEAGMV------GSRQMARVL-KEAEEAGAKVVLVGDP 538 (888)
T ss_pred CCCHHHHHHHH------------HHH-HCCCCCCCCCCEEEEECCCCH------HHHHHHHHH-HHHHHCCCCEEEECCH
T ss_conf 87504788799------------998-738752247766898515441------467788999-9998727605984885
Q ss_pred HHHHCCC
Q ss_conf 2310010
Q gi|255764515|r 162 SPNGLID 168 (458)
Q Consensus 162 i~n~~~e 168 (458)
-|=.|.+
T Consensus 539 ~QLqaI~ 545 (888)
T TIGR02768 539 EQLQAIE 545 (888)
T ss_pred HHHCHHH
T ss_conf 7824424
No 300
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=93.40 E-value=0.15 Score=27.71 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHC-CCCCEEEEE--CCHHHHHHHHHHHH
Q ss_conf 998689999999999975-999499991--60465699999999
Q gi|255764515|r 27 GSGKTVSVLTALSYIHLW-GEKSVLVIA--PLRVAQSVWTSEVQ 67 (458)
Q Consensus 27 G~GKT~~al~~~~~l~~~-~~~~~LIv~--P~~l~~~~W~~Ei~ 67 (458)
|.|||=.+.|.+-.+-.+ +.+++|||. |++=+.+.+..||-
T Consensus 7 GVGKTt~SaAtA~~lAe~qPGkkvLl~STDPAHsL~D~F~~e~G 50 (330)
T TIGR00345 7 GVGKTTISAATAIRLAEQQPGKKVLLVSTDPAHSLSDVFEQELG 50 (330)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHC
T ss_conf 82388899999999985189977999840860027886113217
No 301
>KOG1131 consensus
Probab=93.39 E-value=0.34 Score=25.48 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=35.8
Q ss_pred CCHHHHHHH---HHHHH-CCCEEEEECCCCCHHHHHHHHHH--HHHHCCCCCEEEEECCH
Q ss_conf 747899999---99996-79809995889986899999999--99975999499991604
Q gi|255764515|r 3 LAPHQTKIV---DWILD-HKRCAIWASMGSGKTVSVLTALS--YIHLWGEKSVLVIAPLR 56 (458)
Q Consensus 3 L~p~Q~~~v---~~~~~-~~~~ll~~~~G~GKT~~al~~~~--~l~~~~~~~~LIv~P~~ 56 (458)
.||.|.+-. ...++ .+.|+|-++.|+|||+..+.++- ++.......-||-|...
T Consensus 17 iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRT 76 (755)
T KOG1131 17 IYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRT 76 (755)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 588999999999876345783799778888731289999999998677633358996375
No 302
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.38 E-value=0.18 Score=27.13 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=33.6
Q ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
Q ss_conf 99996798099958899868999999999997599949999160465
Q gi|255764515|r 12 DWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVA 58 (458)
Q Consensus 12 ~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~ 58 (458)
+.+.. +.+++...+|+|||.++-.+++.+......++||+=|-+-.
T Consensus 19 ~~lv~-rH~aIlg~TGsGKS~tv~vLl~~l~~~~~~~vlVfDpHgEY 64 (218)
T pfam01935 19 NKLVS-RHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFDPHGEY 64 (218)
T ss_pred HHHHH-HHEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 99634-21478726999769999999999985479978998288636
No 303
>PRK10436 hypothetical protein; Provisional
Probab=93.36 E-value=0.26 Score=26.23 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=6.0
Q ss_pred CCCCEEEEECCHHH
Q ss_conf 99949999160465
Q gi|255764515|r 45 GEKSVLVIAPLRVA 58 (458)
Q Consensus 45 ~~~~~LIv~P~~l~ 58 (458)
+..-.++++|.+-+
T Consensus 46 g~~i~~~~~~~~~i 59 (461)
T PRK10436 46 GKRIDIECWTRQQM 59 (461)
T ss_pred CCCEEEEECCHHHH
T ss_conf 89418998089999
No 304
>PRK10490 sensor protein KdpD; Provisional
Probab=93.10 E-value=0.55 Score=24.21 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=51.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH-HHHCCCCCCEEEEEECCHHHHHHHHCCCCCE
Q ss_conf 809995889986899999999999759994999916046569999999-9855888815999858978988873077986
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEV-QRWSNFSHMNISVITGTVKQRTKVLKTPAVL 97 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei-~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i 97 (458)
+..++..+|.|||+.|+..+..+...|..-++=++-+.--.. ..++ +.....| .+...+.|..
T Consensus 26 ki~lg~a~gvGKty~mL~~a~~~~~~g~dvvvg~ve~h~r~e--t~~l~~gl~~~p-~~~~~y~g~~------------- 89 (895)
T PRK10490 26 KVFFGACAGVGKTWAMLAEAQRLRAQGLDVVVGVVETHGRKE--TAALLEGLTVLP-PKRLAHRGRQ------------- 89 (895)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH--HHHHHCCCCCCC-CCEEEECCCC-------------
T ss_conf 899426999868999999999999779947999961799689--999874866588-7114127832-------------
Q ss_pred EEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9980642023344200011322044045310024654311567777665430
Q gi|255764515|r 98 YVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 98 ~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
.+-+ +.+..+. .++.++.+||=-|- |..+.++.|+.+-+..+-.
T Consensus 90 ----~~e~--dlda~l~-r~P~~~lvDelaht-n~pgsrh~kR~qdv~ell~ 133 (895)
T PRK10490 90 ----ISEF--DLDAALA-RRPALILMDELAHS-NAPGSRHPKRWQDIEELLE 133 (895)
T ss_pred ----CCCC--CHHHHHH-CCCCEEEEECCCCC-CCCCCCCCCHHHHHHHHHH
T ss_conf ----3416--8989985-39988997334566-9998877640764999997
No 305
>CHL00176 ftsH cell division protein; Validated
Probab=93.06 E-value=0.1 Score=28.65 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 98099958899868999999999997599949999160
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
++.||..++|+|||+.|=|++.+ ..-|.+-+...
T Consensus 211 kGvLL~GpPGTGKTlLAkAvAgE----a~vpF~~~sgs 244 (631)
T CHL00176 211 KGVLLVGPPGTGKTLLAKAIAGE----AEVPFFSISGS 244 (631)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC----CCCCEEEEEHH
T ss_conf 65898898998788999998565----58846998837
No 306
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.99 E-value=0.35 Score=25.38 Aligned_cols=50 Identities=28% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8747899999999967980--99958899868999999999997599949999
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRC--AIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~--ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
-+.|.|.+.++.+...++| +++.++|+|||=+.-+++..+.. ...+++-|
T Consensus 63 G~~~~~~~~l~~~~~~~~GlilitGptGSGKtTtl~a~l~~~~~-~~~~i~ti 114 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITV 114 (264)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEE
T ss_conf 79999999999997089988999789999779999999986436-88508998
No 307
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.96 E-value=0.39 Score=25.14 Aligned_cols=59 Identities=25% Similarity=0.248 Sum_probs=35.0
Q ss_pred HHHHHHHHCC--C---EEEEECCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECCHHHHHHHHHHHH
Q ss_conf 9999999679--8---09995889986899999999999759-----9949999160465699999999
Q gi|255764515|r 9 KIVDWILDHK--R---CAIWASMGSGKTVSVLTALSYIHLWG-----EKSVLVIAPLRVAQSVWTSEVQ 67 (458)
Q Consensus 9 ~~v~~~~~~~--~---~ll~~~~G~GKT~~al~~~~~l~~~~-----~~~~LIv~P~~l~~~~W~~Ei~ 67 (458)
..++.++..+ . .-++.+.|+|||-.++.++......+ ..+++.|.-.+.....|..++.
T Consensus 6 ~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~ 74 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA 74 (226)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 789988579988883999999999989999999999985422116999619999557753199999998
No 308
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.94 E-value=0.58 Score=24.07 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHC----------CCEEEEECCCCCHHHHHHHHH--HHHH-HCCCCCEEEEECCH
Q ss_conf 98747899999999967----------980999588998689999999--9999-75999499991604
Q gi|255764515|r 1 MNLAPHQTKIVDWILDH----------KRCAIWASMGSGKTVSVLTAL--SYIH-LWGEKSVLVIAPLR 56 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~----------~~~ll~~~~G~GKT~~al~~~--~~l~-~~~~~~~LIv~P~~ 56 (458)
+.|.|||...+.-+..- +-++|..+=|=|||-.+-+++ ..+. ......+.|++|+-
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~ 128 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSV 128 (546)
T ss_pred CCCCCHHHHHHHHHHHEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 343518999999876035057870688899999745785578999999999876530476089983428
No 309
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=92.86 E-value=0.068 Score=29.72 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=57.0
Q ss_pred HHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99999999967-----9809995889986899999999999759994999916046569999999985588881599985
Q gi|255764515|r 7 QTKIVDWILDH-----KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVIT 81 (458)
Q Consensus 7 Q~~~v~~~~~~-----~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~ 81 (458)
|=+|++.|.++ +.=.|...||||||+|+-.+++.+ .+|+|||+|.-++..|=+.||+.|+|...+.|-+-+
T Consensus 14 QP~AI~~L~~~l~~G~~~QtLLGvTGsGKTFT~AnVIa~~----~rPTLV~aHNKTLAAQLY~EfKefFPeNAVEYFvSY 89 (667)
T TIGR00631 14 QPKAIAKLVEGLEAGEKEQTLLGVTGSGKTFTMANVIAQV----QRPTLVLAHNKTLAAQLYNEFKEFFPENAVEYFVSY 89 (667)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH----CCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 1899999999985688714785321486278898999984----798499857776799999999863867724525520
Q ss_pred CC
Q ss_conf 89
Q gi|255764515|r 82 GT 83 (458)
Q Consensus 82 g~ 83 (458)
.+
T Consensus 90 YD 91 (667)
T TIGR00631 90 YD 91 (667)
T ss_pred CC
T ss_conf 32
No 310
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.74 E-value=0.4 Score=25.06 Aligned_cols=112 Identities=15% Similarity=0.161 Sum_probs=54.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.++..+=|+|||-+|=.++..++-.+. + .-.|.....+ .++|.. ....++.-+.+.+..
T Consensus 41 YlfsG~RGvGKTt~Ari~AkalNC~~~-~--~~ePC~~C~~--Ck~I~~---g~~~DviEiDaASn~------------- 99 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKALNCENG-P--TAEPCGKCIS--CKEINE---GSLIDVIEIDAASNT------------- 99 (515)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHCCCCC-C--CCCCCHHHHH--HHHHHC---CCCCCCHHHHHHHCC-------------
T ss_conf 651377776710499999999568898-7--7772253166--686514---886410113644454-------------
Q ss_pred ECCCCHHHHHHHCC---CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCC
Q ss_conf 80642023344200---0113220440453100246543115677776654305-9807996584
Q gi|255764515|r 100 INFENLGWLVQELK---GTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWE-SERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~~---~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgT 160 (458)
..+-++.+.+..+ ...+|...||||+|.+. ...++++.|.-.. ..+++..=||
T Consensus 100 -gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 100 -GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------KQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred -CHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHH-------HHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf -867999999872468866664189983187643-------788888751113686674899853
No 311
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.72 E-value=0.62 Score=23.89 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=47.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
..|..+.|+|||.-+-+++......+ .+++.+... -.. .+..++..
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~~~-~~~-~~~~~~l~------------------------------- 86 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLA-ELA-QADPEVLE------------------------------- 86 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEECHH-HHH-HHHHHHHH-------------------------------
T ss_conf 99989999988999999999986269-957995299-987-75399997-------------------------------
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCH
Q ss_conf 806420233442000113220440453100246543115677776654305980799658402
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPS 162 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi 162 (458)
.....+++++|..|.+.+....+ ...+..+-.+....+ .+++|++.-
T Consensus 87 --------------~l~~~d~l~iDDi~~i~~~~~~e-~~lF~l~N~~~~~~~-~ilits~~~ 133 (226)
T TIGR03420 87 --------------GLEQADLVCLDDVEAIAGQPEWQ-EALFHLYNRVREAGG-RLLIAGRAA 133 (226)
T ss_pred --------------HCCCCCEEEEECHHHHCCCHHHH-HHHHHHHHHHHHHCC-EEEEECCCC
T ss_conf --------------27448999996633343783789-999999999986528-289867888
No 312
>PRK10263 DNA translocase FtsK; Provisional
Probab=92.58 E-value=0.42 Score=24.93 Aligned_cols=12 Identities=33% Similarity=0.543 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHH
Q ss_conf 998689999999
Q gi|255764515|r 27 GSGKTVSVLTAL 38 (458)
Q Consensus 27 G~GKT~~al~~~ 38 (458)
++|-|++.|.+.
T Consensus 160 ~lGaTL~LL~~W 171 (1355)
T PRK10263 160 SSGGTIALLCVW 171 (1355)
T ss_pred HHHHHHHHHHHH
T ss_conf 063899999999
No 313
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=92.54 E-value=0.12 Score=28.14 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 980999588998689999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
+..|++.++|+|||..|++++..|
T Consensus 51 raiLlaGppGTGKTAlA~aiakeL 74 (395)
T pfam06068 51 RAVLIAGPPGTGKTALAIAISKEL 74 (395)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 389987799988899999999974
No 314
>KOG4150 consensus
Probab=92.43 E-value=0.68 Score=23.65 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=55.5
Q ss_pred CCCCEEEEHHHHHHHHHHHHH------------------CCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCC
Q ss_conf 488403422236788866410------------------00265334458998764245885589984422111622001
Q gi|255764515|r 319 ANAAPIIVAYHFNSDLARLQK------------------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY 380 (458)
Q Consensus 319 ~~~~kviif~~~~~~~~~i~~------------------~~~~g~~~~~r~~~i~~f~~~~~~vli~s~~~~~~GlnL~~ 380 (458)
.++-.+|-||.-...-+.+.. .+-+|-+.+.|+++-.+.--|+..-+| ++.|...||++-.
T Consensus 523 ~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giI-aTNALELGIDIG~ 601 (1034)
T KOG4150 523 QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGII-ATNALELGIDIGH 601 (1034)
T ss_pred HCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEE-ECCHHHHCCCCCC
T ss_conf 718738996328989999999999999874478999998614775355677778885178268998-5360744424356
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7859999089989868644566662
Q gi|255764515|r 381 GGNILVFFSLWWDLEEHQQMIERIG 405 (458)
Q Consensus 381 a~~~iI~~~~~wn~~~~~Q~~gRi~ 405 (458)
-+.+++...|.+.+.++|.-||.-
T Consensus 602 -LDAVl~~GFP~S~aNl~QQ~GRAG 625 (1034)
T KOG4150 602 -LDAVLHLGFPGSIANLWQQAGRAG 625 (1034)
T ss_pred -CCEEEECCCCCHHHHHHHHHHHCC
T ss_conf -436898268506778998721101
No 315
>TIGR00596 rad1 DNA repair protein (rad1); InterPro: IPR006167 All proteins in this family, for which functions are known, are components in a multiprotein endonuclease complex, usually made up of Rad1 and Rad10 homologues. This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologues of these genes, but the function of the Archaeal proteins is not known, so are not included in this family.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006281 DNA repair.
Probab=92.41 E-value=0.28 Score=25.97 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=50.4
Q ss_pred CEEEEEHHHCCCCCCCCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCH-HCCCC-CCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 589984422111622001-785999908998986864456666202202-03787-752899998589968999999999
Q gi|255764515|r 363 PLLFAHPASCGHGLNLQY-GGNILVFFSLWWDLEEHQQMIERIGVTRQR-QAGFK-RAVFVYYLIAQNTIDELVLQRLRT 439 (458)
Q Consensus 363 ~vli~s~~~~~~GlnL~~-a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~h-R~Gq~-~~v~v~~li~~~tide~i~~~~~~ 439 (458)
.|||.+.++.....-|+. -=++||+||+.-|+-+ |.+ -+||. |.++. ....||+|+.-+||||.-|=.-.+
T Consensus 542 eilistfksL~~nC~L~e~~P~Yvimy~~d~~FIR--q~E----VY~A~v~~~~p~drmrVYFlyYGgS~EEQ~YLts~R 615 (939)
T TIGR00596 542 EILISTFKSLEDNCVLEELKPRYVIMYEPDVSFIR--QVE----VYKASVRPLRPLDRMRVYFLYYGGSVEEQRYLTSVR 615 (939)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEE--EEE----EEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 10122334320033100278535898578879221--478----898885388695512577876177267877876788
Q ss_pred H-HHHHHHHHH
Q ss_conf 9-999999985
Q gi|255764515|r 440 K-STIQDLLLN 449 (458)
Q Consensus 440 K-~~~~~~~~~ 449 (458)
| ++.++-+++
T Consensus 616 REKdAF~kLIr 626 (939)
T TIGR00596 616 REKDAFEKLIR 626 (939)
T ss_pred HHHHHHHHHHH
T ss_conf 88888878864
No 316
>PRK06321 replicative DNA helicase; Provisional
Probab=92.28 E-value=0.71 Score=23.54 Aligned_cols=41 Identities=12% Similarity=0.328 Sum_probs=18.3
Q ss_pred CCCCCEEEEECC--CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 017859999089--98986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~--~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+-- .+++.. .+-+.-+ ...-||.|.+-.|...+
T Consensus 413 qdA-D~V~~l~R~~~~~~~~-~~~~~e~-ivaK~R~G~~g~v~~~f 455 (472)
T PRK06321 413 QDS-DLVMFLLRREYYDPND-KPGTAEL-IVAKNRHGSIGSVPLVF 455 (472)
T ss_pred HHC-CEEEEECCHHHCCCCC-CCCCEEE-EEECCCCCCCCEEEEEE
T ss_conf 308-6899974453249878-8982699-99726789872599998
No 317
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=92.11 E-value=0.37 Score=25.29 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHCCCEEE--EECCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999996798099--9588998689999999999975999499
Q gi|255764515|r 11 VDWILDHKRCAI--WASMGSGKTVSVLTALSYIHLWGEKSVL 50 (458)
Q Consensus 11 v~~~~~~~~~ll--~~~~G~GKT~~al~~~~~l~~~~~~~~L 50 (458)
+..+.+.++||+ ..++|||||=|.-+++.+++.....-+|
T Consensus 119 ~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIi 160 (350)
T TIGR01420 119 LRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHII 160 (350)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 999983669938987688986789999999787403888825
No 318
>PRK08082 consensus
Probab=91.93 E-value=0.78 Score=23.29 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=18.9
Q ss_pred CCCCCEEEEECCCC--CHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 01785999908998--986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSLWW--DLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~~w--n~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+-.+. ++....+.+.-+. -.-||-|.+-.|...+
T Consensus 388 qdA-D~v~~l~R~~~y~~~~~~~~~~e~i-vaK~RnG~~g~v~l~f 431 (453)
T PRK08082 388 QDA-DIVAFLYRDDYYDRETENKNIIEII-IAKQRNGPVGTVELAF 431 (453)
T ss_pred HHC-CEEEEECCHHHCCCCCCCCCEEEEE-EECCCCCCCCEEEEEE
T ss_conf 336-6898965565438888878806999-9736899861599998
No 319
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=91.83 E-value=0.2 Score=26.82 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=25.9
Q ss_pred HHHHHHHHHC-----------CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999999967-----------9809995889986899999999999759994999916
Q gi|255764515|r 8 TKIVDWILDH-----------KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 8 ~~~v~~~~~~-----------~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
.+.|+|+.+- ++.||..++|+|||+.|=+++.. ..-+.+-+..
T Consensus 165 ~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgE----a~vpF~~~sg 218 (644)
T PRK10733 165 AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE----AKVPFFTISG 218 (644)
T ss_pred HHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCC----CCCEEEEEEH
T ss_conf 99999812979999749979985177798998778999998645----5980899784
No 320
>KOG0731 consensus
Probab=91.79 E-value=0.19 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 9809995889986899999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALS 39 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~ 39 (458)
+++||..++|+|||+-|-|.+.
T Consensus 345 kGvLL~GPPGTGKTLLAKAiAG 366 (774)
T KOG0731 345 KGVLLVGPPGTGKTLLAKAIAG 366 (774)
T ss_pred CCEEEECCCCCCHHHHHHHHHC
T ss_conf 7517878999867899998853
No 321
>PHA00350 putative assembly protein
Probab=91.79 E-value=0.28 Score=25.99 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=14.9
Q ss_pred EEEECCCCCHHHHHHHH--HHHHH
Q ss_conf 99958899868999999--99999
Q gi|255764515|r 21 AIWASMGSGKTVSVLTA--LSYIH 42 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~--~~~l~ 42 (458)
++...+|+|||..|... +-.|+
T Consensus 5 ~~~G~pGSyKS~~av~~~ilPALk 28 (402)
T PHA00350 5 AIVGRPGSYKSYEAVVYHIIPALK 28 (402)
T ss_pred EEECCCCCCCCEEEEHHHHHHHHH
T ss_conf 982599997660110867688985
No 322
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.71 E-value=0.83 Score=23.14 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=17.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 09995889986899999999999
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
.|+..+-|+|||-+|..++..+.
T Consensus 23 YLF~G~~G~Gk~~~a~~~a~~l~ 45 (303)
T PRK07132 23 FLLKSNYNNDLDESILYFLNKFN 45 (303)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88678998679999999999972
No 323
>PRK08760 replicative DNA helicase; Provisional
Probab=91.69 E-value=0.83 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=18.1
Q ss_pred CCCCCEEEEECCC--CCHHHHH-HHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 0178599990899--8986864-456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSLW--WDLEEHQ-QMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~~--wn~~~~~-Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+..+ +++.... +-+.-+. -.-||.|.+-.|.+.+
T Consensus 413 qdA-DvV~~l~R~~~y~~~~~~~~~~~e~i-vaKnR~G~~G~v~l~f 457 (476)
T PRK08760 413 QDA-DMIVFIYRDDYYNKENSPDKGLAEII-IGKHRGGPTGSCKLKF 457 (476)
T ss_pred HCC-CEEEEECCHHHCCCCCCCCCCEEEEE-EECCCCCCCCEEEEEE
T ss_conf 208-68999624532387679888807999-9746789862699998
No 324
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=91.64 E-value=0.53 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 3541000223430001343333
Q gi|255764515|r 289 ANGAVYYDEEKHWKEVHDEKIK 310 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~k~~ 310 (458)
+.+|+.|+-.+....--++|+.
T Consensus 279 vEDPVEY~i~GIgQ~Qvn~kIg 300 (495)
T TIGR02533 279 VEDPVEYQIEGIGQIQVNPKIG 300 (495)
T ss_pred EECCEEEEECCCCEEEECCCCC
T ss_conf 6578247624876365146543
No 325
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.63 E-value=0.25 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 80999588998689999999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..|++.++|+|||..|++++..|
T Consensus 67 giLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 67 GILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79997899976889999999985
No 326
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.57 E-value=0.86 Score=23.05 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=23.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0999588998689999999999975999499991
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
.+++...|+|||=++--++..+...+ +++++|+
T Consensus 78 I~lvG~~G~GKTTT~AKLA~~~~~~~-~kV~lia 110 (270)
T PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFIT 110 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEE
T ss_conf 99988898988999999999998679-9089998
No 327
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=91.54 E-value=0.86 Score=23.04 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=15.6
Q ss_pred HHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99999-99996798099958899868999999999
Q gi|255764515|r 7 QTKIV-DWILDHKRCAIWASMGSGKTVSVLTALSY 40 (458)
Q Consensus 7 Q~~~v-~~~~~~~~~ll~~~~G~GKT~~al~~~~~ 40 (458)
|...+ +.+..++|.++...+|+|||=-+=|++..
T Consensus 128 Q~d~l~~Av~ar~NIlv~GGTGSGKTTLaNAlla~ 162 (315)
T TIGR02782 128 QRDVLREAVAARKNILVVGGTGSGKTTLANALLAE 162 (315)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999971298899814588579999999998
No 328
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.40 E-value=0.32 Score=25.60 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=20.2
Q ss_pred CEEECCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 20440453100246543115-67777665430598079965840
Q gi|255764515|r 119 ATIVVDESTKLKSFRLRQGS-KTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 119 ~~iIiDEaH~lkn~~~~~~s-~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
-.+.|||.|.+-..++..++ -+++.+...-.+..-+..-.-||
T Consensus 268 iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgATT~ 311 (852)
T TIGR03346 268 IILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred EEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCH
T ss_conf 79996125553268876664106777437874798559982789
No 329
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.37 E-value=0.36 Score=25.34 Aligned_cols=44 Identities=23% Similarity=0.114 Sum_probs=22.5
Q ss_pred HHHHCCCCCCEEEEEHHHCCCCCC--CCCC--CCEEEEECCCCCHHHH
Q ss_conf 764245885589984422111622--0017--8599990899898686
Q gi|255764515|r 354 IQEWNEGKIPLLFAHPASCGHGLN--LQYG--GNILVFFSLWWDLEEH 397 (458)
Q Consensus 354 i~~f~~~~~~vli~s~~~~~~Gln--L~~a--~~~iI~~~~~wn~~~~ 397 (458)
+...++.+.+|+++.+.--=..|+ |... -+.++|.++|-...+.
T Consensus 351 Lt~m~e~~~~VfViattN~~~~L~pellR~GRFD~~~~v~lP~~~~R~ 398 (491)
T CHL00195 351 ITWLSEKKSPVFVVATANNIDSLPLELLRKGRFDEIFFLDLPNLEERE 398 (491)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEECCCCCHHHHH
T ss_conf 998646899769999589975589877089877704764895989999
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.34 E-value=0.9 Score=22.91 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=23.6
Q ss_pred HCCCCCCEEEEEHHHCCCCC--CCCCCCCEE-EEECCCCCHHHHHHHHHHH
Q ss_conf 24588558998442211162--200178599-9908998986864456666
Q gi|255764515|r 357 WNEGKIPLLFAHPASCGHGL--NLQYGGNIL-VFFSLWWDLEEHQQMIERI 404 (458)
Q Consensus 357 f~~~~~~vli~s~~~~~~Gl--nL~~a~~~i-I~~~~~wn~~~~~Q~~gRi 404 (458)
.+.+..+|.|+|+++-..|= -|+.-++.+ |=+..-.+|..+.++..+.
T Consensus 220 l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~ 270 (282)
T TIGR03499 220 LEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALERL 270 (282)
T ss_pred HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHC
T ss_conf 973899679998077767899999999999597489939999999999865
No 331
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.28 E-value=0.92 Score=22.87 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=49.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCE
Q ss_conf 8099958899868999999999997599-949999160465699999999855888815999858978988873077986
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGE-KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVL 97 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i 97 (458)
-..|..++|+|||--+=++..+....+. .+++.+.. + .|..++..-... +.
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s----e-~f~~~~v~a~~~---------~~-------------- 166 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS----E-DFTNDFVKALRD---------NE-------------- 166 (408)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCH----H-HHHHHHHHHHHH---------HH--------------
T ss_conf 5799879999789999999999986299864885048----9-989999999885---------04--------------
Q ss_pred EEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC--CCH
Q ss_conf 99806420233442000113220440453100246543115677776654305980799658--402
Q gi|255764515|r 98 YVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTG--TPS 162 (458)
Q Consensus 98 ~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTg--TPi 162 (458)
.+.++..+.-|++++|-.|.+.+....+ .-.+...-.+....+ .+++|+ +|-
T Consensus 167 -----------~~~Fk~~y~~dlllIDDiq~l~gk~~~q-eefFh~FN~l~~~~k-qIvltsdr~P~ 220 (408)
T COG0593 167 -----------MEKFKEKYSLDLLLIDDIQFLAGKERTQ-EEFFHTFNALLENGK-QIVLTSDRPPK 220 (408)
T ss_pred -----------HHHHHHHHCCCEEEECHHHHHCCCHHHH-HHHHHHHHHHHHCCC-EEEEECCCCCH
T ss_conf -----------8888876426735551386756771579-999999998885088-79997078832
No 332
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.26 E-value=0.59 Score=24.03 Aligned_cols=45 Identities=33% Similarity=0.421 Sum_probs=30.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECCHHHHHHHHHH
Q ss_conf 09995889986899999999999759-----99499991604656999999
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWG-----EKSVLVIAPLRVAQSVWTSE 65 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~-----~~~~LIv~P~~l~~~~W~~E 65 (458)
.++-...|+|||-.|+--.++|.+.. .+++||+.|..+.. -+.+.
T Consensus 229 lVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl-eYis~ 278 (747)
T COG3973 229 LVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL-EYISR 278 (747)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHH-HHHHH
T ss_conf 899558888713588999999985356624668659982838999-99987
No 333
>PRK05595 replicative DNA helicase; Provisional
Probab=91.21 E-value=0.93 Score=22.83 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCCCCEEEEECC--CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 017859999089--98986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~--~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+-. .+++....+-+..+.- .-||.|.+-.|...+
T Consensus 385 qdA-D~v~~l~R~~~y~~~~~~~~~~eliv-aKnR~G~~G~v~~~f 428 (444)
T PRK05595 385 QDA-DLVMFLYRDEYYNKETEDKNVAECII-AKQRNGPTGTVKLAW 428 (444)
T ss_pred HHC-CEEEEECCHHHCCCCCCCCCCEEEEE-EECCCCCCCEEEEEE
T ss_conf 437-68989654421488877788258999-806889961599998
No 334
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.12 E-value=0.48 Score=24.58 Aligned_cols=55 Identities=13% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCCCCCCHHHHHHHHHHHCCC-C--CCEEEEEH-HHCCCCCCCCC-CCCEEEEECCCCCH
Q ss_conf 002653344589987642458-8--55899844-22111622001-78599990899898
Q gi|255764515|r 340 AFPQGRTLDKDPCTIQEWNEG-K--IPLLFAHP-ASCGHGLNLQY-GGNILVFFSLWWDL 394 (458)
Q Consensus 340 ~~~~g~~~~~r~~~i~~f~~~-~--~~vli~s~-~~~~~GlnL~~-a~~~iI~~~~~wn~ 394 (458)
.|.++....++...+++|... + ..+|++.. ...+|||||.. .++.+|...+|+-+
T Consensus 23 vf~E~~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~p~ 82 (142)
T smart00491 23 VFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 999589835799999999986236981999984415752150599776599997089999
No 335
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.76 E-value=1 Score=22.57 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCCCHHHHHHHHHHHHH-HCCCCCEEEEECCHHHHHHHHHHHHHHC-----CCCCCE-EEEEECCH---H-HHHHHHCCC
Q ss_conf 89986899999999999-7599949999160465699999999855-----888815-99985897---8-988873077
Q gi|255764515|r 26 MGSGKTVSVLTALSYIH-LWGEKSVLVIAPLRVAQSVWTSEVQRWS-----NFSHMN-ISVITGTV---K-QRTKVLKTP 94 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~-~~~~~~~LIv~P~~l~~~~W~~Ei~kf~-----~~~~~~-~~~~~g~~---~-~r~~~~~~~ 94 (458)
-|+|||.....-+++|+ ..+.+++++-+-+..+.++...-+.+|. ..|.+. ..+-++.. + .....+...
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~ 264 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYI 264 (660)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 47873029887778974479986389986667888999999999999886248872426888435787888603889998
Q ss_pred CCEEEECCCC----HHHH----HHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHH--
Q ss_conf 9869980642----0233----44200011322044045310024654311567777665430598079965840231--
Q gi|255764515|r 95 AVLYVINFEN----LGWL----VQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPN-- 164 (458)
Q Consensus 95 ~~i~i~s~e~----~~~~----~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n-- 164 (458)
....-++|.. ++.. ....+...-+|.|.+||++-+ ....+..+-.+.... .++.--+--.||
T Consensus 265 ~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF-------P~~F~~Lcf~~tkd~-KrlvyAyDelQNls 336 (660)
T COG3972 265 CHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF-------PQSFIDLCFMVTKDK-KRLVYAYDELQNLS 336 (660)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCC-------CHHHHHHHHHHHCCC-CEEEEEHHHHHCCC
T ss_conf 4266545478774067999999986425642317994245547-------789999999982475-43898657643111
Q ss_pred -----HCCCHHH
Q ss_conf -----0010134
Q gi|255764515|r 165 -----GLIDLWG 171 (458)
Q Consensus 165 -----~~~el~~ 171 (458)
.|.|+|+
T Consensus 337 ~~~m~ppe~iFg 348 (660)
T COG3972 337 NVKMRPPEEIFG 348 (660)
T ss_pred CCCCCCHHHHCC
T ss_conf 567799899648
No 336
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=90.76 E-value=0.33 Score=25.60 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=25.0
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6798099958899868999999999997599
Q gi|255764515|r 16 DHKRCAIWASMGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 16 ~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~ 46 (458)
-|+.+|++..+|+|||.+.=.+++.+...|.
T Consensus 20 ~NRHGLiaGATGTGKTvTLq~lAE~~S~~GV 50 (504)
T pfam05872 20 ANRHGLIAGATGTGKTVTLQVLAESFSDAGV 50 (504)
T ss_pred CCCCCEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 0521662265778617899999998745499
No 337
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=90.72 E-value=0.58 Score=24.06 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHH---H-HCCCEEEEECCCCCHHHHHHHHHHHHHHCC-------------CCCEEEEECCH
Q ss_conf 99999999---9-679809995889986899999999999759-------------99499991604
Q gi|255764515|r 7 QTKIVDWI---L-DHKRCAIWASMGSGKTVSVLTALSYIHLWG-------------EKSVLVIAPLR 56 (458)
Q Consensus 7 Q~~~v~~~---~-~~~~~ll~~~~G~GKT~~al~~~~~l~~~~-------------~~~~LIv~P~~ 56 (458)
|.+|++-+ . ++++.++..++|+||++.|=++.+.|-... ..|.+-++|+.
T Consensus 36 Qe~Av~~i~~Aa~qrrhvlliG~PGtGKSmlakam~elLpk~~ledilv~pNp~d~~~P~v~~vpag 102 (637)
T PRK13765 36 QEHAVEVIKKAAKQRRHVMLIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPEDPNNPKIRTVPAG 102 (637)
T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 1999999999998437389868999879999999997579886562799679888889805741687
No 338
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=90.55 E-value=0.2 Score=26.87 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=9.4
Q ss_pred CEEEEECCCCCHHHHHHHHH
Q ss_conf 80999588998689999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTAL 38 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~ 38 (458)
+.||..++|+|||+.|=|.+
T Consensus 158 GvLLyGPPGtGKTLlAKAvA 177 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 65700757976889999863
No 339
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=90.47 E-value=0.46 Score=24.68 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999679809995889986899999999999759994999916
Q gi|255764515|r 12 DWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 12 ~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
.||....-.=+-.+.|+|||-.|+.++.. -.+|+++|.=
T Consensus 16 ~yL~~G~PvHl~GPaG~GKT~LA~hvA~~----r~RPV~l~~G 54 (265)
T TIGR02640 16 RYLKSGYPVHLRGPAGTGKTTLAMHVARK----RDRPVVLING 54 (265)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCEEEEEC
T ss_conf 63227886674478885568999999973----6896899865
No 340
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.38 E-value=0.24 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 980999588998689999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..+||+.+||+|||=-|-..|.++
T Consensus 31 DH~LL~GPPGLGKTTLA~IiA~Em 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 416631756874678999999983
No 341
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.37 E-value=1.1 Score=22.36 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=35.2
Q ss_pred HHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 999999679-----80999588998689999999999975999499991604656999999998
Q gi|255764515|r 10 IVDWILDHK-----RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 10 ~v~~~~~~~-----~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
.++.++..+ -.++..++|+|||+.+.-++......| .++++|+.-.... .|.+..+.
T Consensus 12 ~ld~~lggGip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g-~~~~yis~e~t~~-~~i~qm~s 73 (230)
T PRK08533 12 ELHKRLGGGIPFGSIILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSSQLTTT-EFIKQMMS 73 (230)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEECCCHH-HHHHHHHH
T ss_conf 57887178988984899986899878999999999998789-8699999438999-99999998
No 342
>PRK10416 cell division protein FtsY; Provisional
Probab=90.35 E-value=1.1 Score=22.35 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=9.6
Q ss_pred HHHHHHHCCCCCCEEEEE
Q ss_conf 998764245885589984
Q gi|255764515|r 351 PCTIQEWNEGKIPLLFAH 368 (458)
Q Consensus 351 ~~~i~~f~~~~~~vli~s 368 (458)
...++...+..++|+|+-
T Consensus 367 ~dai~~a~~~~~DvviiD 384 (499)
T PRK10416 367 FDAIQAAKARNVDVLIAD 384 (499)
T ss_pred HHHHHHHHHCCCCEEEEE
T ss_conf 999999997299989985
No 343
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=90.07 E-value=1.2 Score=22.20 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE-E-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCC
Q ss_conf 899868999999999997599949999-1-60465699999999855888815999858978988873077986998064
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI-A-PLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFE 103 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv-~-P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e 103 (458)
=|+|||-.++.++..+...|. ++++| + |..-+. .|.+.-.+-...+.. ..+...... .
T Consensus 11 GG~GKtT~a~~la~~~~~~g~-~V~liD~Dpq~s~~-~W~~~a~~~~~~~~~-~~v~~~~~~-----------------~ 70 (231)
T pfam07015 11 GGAGKTTALMGLCSALASDGK-RVALFEADENRPLT-KWRENALRKGTWDPA-CEIFNADEL-----------------P 70 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHH-HHHHHHHHCCCCCCC-CCEECCCCH-----------------H
T ss_conf 986599999999999996899-59999689986889-999987646888876-522205660-----------------1
Q ss_pred CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHC
Q ss_conf 2023344200011322044045310024654311567777665430598079965840231001013467751
Q gi|255764515|r 104 NLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFL 176 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l 176 (458)
.+....+.. ....||.||+|=.-.. +....... ..+..++. |++-++.|+|.-...+
T Consensus 71 ~l~~~~~~~-~~~~yD~VIIDtpg~~--------s~~~~~AI---~~ADlVLI----P~qpSplD~~~a~~t~ 127 (231)
T pfam07015 71 LLEQAYEHA-EGSGFDYALADTHGGS--------SELNNTII---ASSDLLLI----PTMLTPLDIDEALATY 127 (231)
T ss_pred HHHHHHHHH-HHCCCCEEEECCCCCC--------CHHHHHHH---HHCCEEEE----CCCCCHHHHHHHHHHH
T ss_conf 589999988-6579998998399857--------58999999---97898997----7899823399999999
No 344
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=89.96 E-value=0.49 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 98099958899868999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSY 40 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~ 40 (458)
++.+|..++|+|||+.|=+.+..
T Consensus 241 kG~ll~GPPGtGktllaka~ane 263 (980)
T TIGR01243 241 KGVLLYGPPGTGKTLLAKAVANE 263 (980)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 73587558986178999998753
No 345
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=89.87 E-value=1.2 Score=22.11 Aligned_cols=44 Identities=18% Similarity=0.072 Sum_probs=28.9
Q ss_pred HHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999967-----980999588998689999999999975999499991
Q gi|255764515|r 10 IVDWILDH-----KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 10 ~v~~~~~~-----~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
+.+.+++. .-.|+...+|+|||.-++-++..--..+..+.|.|+
T Consensus 12 GLD~iL~GGlp~g~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyit 60 (501)
T PRK09302 12 GFDDITNGGLPKGRPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVT 60 (501)
T ss_pred CHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 1577854898899779998389999999999999999885599789998
No 346
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=89.85 E-value=1.2 Score=22.10 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=26.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 80999588998689999999999975999499991
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
+..++..+|.|||+.|+..+..+...|..-++=++
T Consensus 24 kIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~v 58 (890)
T COG2205 24 KIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVV 58 (890)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 89962688862799999999999975996799983
No 347
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=89.74 E-value=1.3 Score=22.04 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8998689999999999975999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEK 47 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~ 47 (458)
=|+|||=.++.++..+...|.+
T Consensus 60 GGtGKTP~v~~la~~l~~~g~~ 81 (334)
T PRK00652 60 GGNGKTPVVIWLAEQLQARGVK 81 (334)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC
T ss_conf 8877799999999999976993
No 348
>PRK10867 signal recognition particle protein; Provisional
Probab=89.68 E-value=1.3 Score=22.02 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=25.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0999588998689999999999975999499991
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
.+++.--|+|||=++--++.+++..+.+++|+||
T Consensus 103 Im~vGLqGsGKTTT~aKLA~~lk~k~~k~vllva 136 (453)
T PRK10867 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (453)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9997468885185899999999973898379855
No 349
>PRK10037 cell division protein; Provisional
Probab=89.58 E-value=1.3 Score=21.97 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCC
Q ss_conf 899868999999999997599949999--160465699999999855888815999858978988873077986998064
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI--APLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFE 103 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv--~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e 103 (458)
=|.|||-.+.+++..|...| +++|+| +|.+++.-.+.-.+ ....+.--....|. .-+...+.....+.+..|.
T Consensus 11 GGVGkTTltAnLA~aL~~~g-~~VlaID~dpqN~Lrlhfg~~~---~~~~Gwa~a~l~g~-~W~~a~~~~~~gl~~LPfG 85 (250)
T PRK10037 11 GGVGTTSITAALAWSLQMLG-ENVLVIDACPDNLLRLSFNVDF---THRQGWARALLDGQ-DWRDAGLRYTSQLDLLPFG 85 (250)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHCCCCC---CCCCCHHHHHHCCC-CHHHHHHHCCCCCEEEECC
T ss_conf 88768999999999999779-9189995782566787549985---44772999985699-7899985056993697278
Q ss_pred CHHHHH------------------HHCCCCCCCCEEECCCCCC
Q ss_conf 202334------------------4200011322044045310
Q gi|255764515|r 104 NLGWLV------------------QELKGTWPFATIVVDESTK 128 (458)
Q Consensus 104 ~~~~~~------------------~~~~~~~~~~~iIiDEaH~ 128 (458)
.+.... ..+.....|+.||+|=.+.
T Consensus 86 ~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~vliD~P~g 128 (250)
T PRK10037 86 QLSIEEQENPQHWQTTLGDICSALQQLKASGRYQWILLDLPRG 128 (250)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 7998998638877651799999986200257899899965999
No 350
>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=89.50 E-value=1.3 Score=21.94 Aligned_cols=80 Identities=23% Similarity=0.322 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7478999999999679-8099958899868999999999997599-9499991604656999999998558888159998
Q gi|255764515|r 3 LAPHQTKIVDWILDHK-RCAIWASMGSGKTVSVLTALSYIHLWGE-KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVI 80 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~-~~ll~~~~G~GKT~~al~~~~~l~~~~~-~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~ 80 (458)
|..-|..++.+.+... -.++-.++|+|||.+...++......+. .++|+.+|.++..+.-.+-+.. ..|...+.-+
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~--~~p~~~~~~~ 280 (709)
T TIGR00376 203 LNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGPEERVLVTAPSNIAVDNLLERLAP--LYPDLKLLRL 280 (709)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH--HCCCCEEEEC
T ss_conf 22346777654312344168726777762156899999998528533067623531037788888764--1454102222
Q ss_pred ECCHH
Q ss_conf 58978
Q gi|255764515|r 81 TGTVK 85 (458)
Q Consensus 81 ~g~~~ 85 (458)
|.+.
T Consensus 281 -g~p~ 284 (709)
T TIGR00376 281 -GHPA 284 (709)
T ss_pred -CCHH
T ss_conf -6604
No 351
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=0.93 Score=22.83 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=20.8
Q ss_pred CCCEEEEHHHHHHHHHHHH-HCCCCCCCHHH-HHH-HH------HHH-CCCCCCEEEEE
Q ss_conf 8840342223678886641-00026533445-899-87------642-45885589984
Q gi|255764515|r 320 NAAPIIVAYHFNSDLARLQ-KAFPQGRTLDK-DPC-TI------QEW-NEGKIPLLFAH 368 (458)
Q Consensus 320 ~~~kviif~~~~~~~~~i~-~~~~~g~~~~~-r~~-~i------~~f-~~~~~~vli~s 368 (458)
...++||| ..+++.|- +++-.+++.++ -++ ++ +-| ..+.++|+.++
T Consensus 242 ekaPsIIF---iDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 242 EKAPSIIF---IDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred HCCCEEEE---EECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 14984999---831122311113688885099999999999860588978876899855
No 352
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.81 E-value=0.96 Score=22.75 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=26.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 809995889986899999999999759994999916
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
..++..++|+|||+-++-++......| .+++.|+-
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~g-e~vlyvs~ 59 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREG-EPVLYVST 59 (260)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC-CEEEEEEE
T ss_conf 899993899868999999999776269-85899992
No 353
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=0.64 Score=23.81 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9809995889986899999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIH 42 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~ 42 (458)
.+-+|..|+|.|||..+=.++..+-
T Consensus 192 NNPvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 192 NNPVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9984766898889999989999974
No 354
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=1.5 Score=21.52 Aligned_cols=116 Identities=22% Similarity=0.190 Sum_probs=61.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.|++.|+|.||+=..+-++..+...+ ++|+|+----. .||.--..|.. .+. ..+++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~-~QiklRA~RL~-~~~--------------------~~l~l 151 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESL-QQIKLRADRLG-LPT--------------------NNLYL 151 (456)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC--CEEEEECCCCH-HHHHHHHHHHC-CCC--------------------CCEEE
T ss_conf 99736898779899999999987059--57999677678-99999999828-996--------------------45577
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCC----CCHHH---HHHHHHHHHHCCCEEEEECCC
Q ss_conf 80642023344200011322044045310024654----31156---777766543059807996584
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRL----RQGSK---TARALAKPAWESERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~----~~~s~---~~~~l~~~~~~~~~~l~LTgT 160 (458)
.....+......+ ...+++++|+|=.+.+-++.- ...+| .+..+.+++....--+++.|-
T Consensus 152 ~aEt~~e~I~~~l-~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 152 LAETNLEDIIAEL-EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred EHHCCHHHHHHHH-HHCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 4112899999999-854997899965412302633579985899999999999999875973999988
No 355
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=88.52 E-value=0.95 Score=22.77 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=25.9
Q ss_pred CCCE--EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 7980--99958899868999999999997599949999160
Q gi|255764515|r 17 HKRC--AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 17 ~~~~--ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
+++. .|+..+|+|||-.|=.++..+...+.....+++|-
T Consensus 32 ~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpm 72 (230)
T PRK09270 32 QRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPM 72 (230)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 97189999899988999999999999862379985799736
No 356
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=88.47 E-value=0.27 Score=26.11 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=10.3
Q ss_pred CEEEEECCCCCHHHHH
Q ss_conf 8099958899868999
Q gi|255764515|r 19 RCAIWASMGSGKTVSV 34 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~a 34 (458)
|.++..+||+|||+.|
T Consensus 215 Nlll~GPPGsGKTmla 230 (505)
T TIGR00368 215 NLLLLGPPGSGKTMLA 230 (505)
T ss_pred CEEEECCCCCCHHHHH
T ss_conf 4376782496268999
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.42 E-value=1.6 Score=21.48 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 478999999999-679809995889986899999999999759994999
Q gi|255764515|r 4 APHQTKIVDWIL-DHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLV 51 (458)
Q Consensus 4 ~p~Q~~~v~~~~-~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LI 51 (458)
-|-|.+.+..+. .+.+.+++.+||+|||=.+-+++.++ ....++++
T Consensus 11 ~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i--~~~~rivt 57 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI--PPDERIIT 57 (186)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC--CCCCCEEE
T ss_conf 999999999999859989998999998999999999613--34564598
No 358
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=88.26 E-value=1.2 Score=22.17 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCH------------HHHHHHHH-H
Q ss_conf 87478999999999679809995889986899999999999759---99499991604------------65699999-9
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWG---EKSVLVIAPLR------------VAQSVWTS-E 65 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~---~~~~LIv~P~~------------l~~~~W~~-E 65 (458)
.|.+-|.+||.... +=.||.+.=|+|||-.--.=|++|.... .+++|=|+=++ ++...|.. |
T Consensus 4 ~LN~~Q~~AV~tt~--GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaqqe 81 (811)
T TIGR01073 4 GLNPEQREAVKTTE--GPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQQE 81 (811)
T ss_pred CCCHHHHHHHHHCC--CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02489999973037--8410101378873105789999999722369850465532205316789999998524665457
Q ss_pred H-HHHCCCCCCEEEEEECCHHHHHHHH-CCCCCEEEECCCCHH-----HHHH----HCCCCCCCCEEECCCCC
Q ss_conf 9-9855888815999858978988873-077986998064202-----3344----20001132204404531
Q gi|255764515|r 66 V-QRWSNFSHMNISVITGTVKQRTKVL-KTPAVLYVINFENLG-----WLVQ----ELKGTWPFATIVVDEST 127 (458)
Q Consensus 66 i-~kf~~~~~~~~~~~~g~~~~r~~~~-~~~~~i~i~s~e~~~-----~~~~----~~~~~~~~~~iIiDEaH 127 (458)
| .+|.-... ..........+ ....++.|.|++++- .+.+ .+...+.-..=|+|++-
T Consensus 82 fsqrwellGk------yeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~D 148 (811)
T TIGR01073 82 FSQRWELLGK------YEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSD 148 (811)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 7678887434------667899999886521423230389999998888888898762114541576111788
No 359
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=88.24 E-value=1.6 Score=21.41 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=26.2
Q ss_pred HHHHHHHHHCC-C--EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 99999999679-8--0999588998689999999999975999499991604
Q gi|255764515|r 8 TKIVDWILDHK-R--CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLR 56 (458)
Q Consensus 8 ~~~v~~~~~~~-~--~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~ 56 (458)
.+.+...+.++ + .++...=|.|||-.+..++..+...+...+.+.+...
T Consensus 8 L~~L~~~~~~~~~~~ivi~G~RR~GKTsLi~~~~~~~~~~~~~~i~~~~~~~ 59 (223)
T pfam01637 8 LKELEEWAERGTYPIIVVYGPRRCGKTALLREFLEELRELGYRVIYYDPLRR 59 (223)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECHHH
T ss_conf 9999999966997189998688787999999999863346852899951444
No 360
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=88.13 E-value=1.1 Score=22.38 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHHHHH---H--CC-CEEEEECCCCCHHHHH
Q ss_conf 999999999---6--79-8099958899868999
Q gi|255764515|r 7 QTKIVDWIL---D--HK-RCAIWASMGSGKTVSV 34 (458)
Q Consensus 7 Q~~~v~~~~---~--~~-~~ll~~~~G~GKT~~a 34 (458)
|.+++..|. . |+ ..++..++|.|||--|
T Consensus 70 Qe~GI~ALKAALCGPNPQHVIiYGPPGVGKTAAA 103 (532)
T TIGR02902 70 QEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (532)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 3556899998606868963898788696178999
No 361
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=88.08 E-value=0.71 Score=23.52 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHHH
Q ss_conf 899868999999999997599949999--1604656
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI--APLRVAQ 59 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv--~P~~l~~ 59 (458)
=|.|||-+|+.++..|...+.+++|+| =|.+-..
T Consensus 12 GGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t 47 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLT 47 (259)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 885199999999999998389978999789994177
No 362
>PRK05636 replicative DNA helicase; Provisional
Probab=88.08 E-value=1.6 Score=21.34 Aligned_cols=13 Identities=23% Similarity=0.089 Sum_probs=7.2
Q ss_pred HHCCCCCCEEEEE
Q ss_conf 2037877528999
Q gi|255764515|r 410 RQAGFKRAVFVYY 422 (458)
Q Consensus 410 hR~Gq~~~v~v~~ 422 (458)
||.|++-.|.+.+
T Consensus 482 nRnG~~G~v~l~f 494 (507)
T PRK05636 482 HRGGPIDTVQVAH 494 (507)
T ss_pred CCCCCCEEEEEEE
T ss_conf 6889851699998
No 363
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.04 E-value=1.6 Score=21.33 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=23.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 09995889986899999999999759994999916
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
.+++.++|+|||-.++.++......+ .+++++.-
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~-~~~~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG-GKVVYVDI 35 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEEC
T ss_conf 89998999989999999999987639-97999986
No 364
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=88.02 E-value=0.67 Score=23.70 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=12.1
Q ss_pred HCCCEEEEECCCCCHH
Q ss_conf 6798099958899868
Q gi|255764515|r 16 DHKRCAIWASMGSGKT 31 (458)
Q Consensus 16 ~~~~~ll~~~~G~GKT 31 (458)
.+++.+|+..+|+|||
T Consensus 157 ~~knIii~GGTgSGKT 172 (328)
T TIGR02788 157 SRKNIIISGGTGSGKT 172 (328)
T ss_pred CCCEEEEEECCCCHHH
T ss_conf 3891999906897189
No 365
>KOG1806 consensus
Probab=87.99 E-value=1.4 Score=21.76 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCHHHHHHHHH
Q ss_conf 87478999999999679809995889986899999999999-7599949999160465699999
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIH-LWGEKSVLVIAPLRVAQSVWTS 64 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~-~~~~~~~LIv~P~~l~~~~W~~ 64 (458)
+.-|-|.+++.--...+-..++.++|+|||-+|.-++..+. ..+..++||++-.+-..|+-.+
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfe 801 (1320)
T KOG1806 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFE 801 (1320)
T ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH
T ss_conf 0688999998834787754630699999743024454456516987624899852312567877
No 366
>PRK08694 consensus
Probab=87.94 E-value=1.7 Score=21.29 Aligned_cols=42 Identities=10% Similarity=0.309 Sum_probs=22.0
Q ss_pred CCCCCEEEEECC--CCCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 017859999089--98986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSL--WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~--~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+.- .+++....+-+..+.- --||.|.+-.|...+
T Consensus 404 qDA-D~v~~l~R~~~y~~~~~~~~~~e~iv-aK~R~G~~G~v~l~f 447 (468)
T PRK08694 404 QDA-DLIMFMYRDEYYNQDSPMKGLAECII-GKHRNGPVGKIFLTW 447 (468)
T ss_pred HHC-CEEEEECCHHHCCCCCCCCCEEEEEE-ECCCCCCCCEEEEEE
T ss_conf 337-68999634310388988788079999-705789861599998
No 367
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.92 E-value=1.1 Score=22.47 Aligned_cols=46 Identities=28% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999679-----8099958899868999999999997599949999160
Q gi|255764515|r 9 KIVDWILDHK-----RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 9 ~~v~~~~~~~-----~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
..++.++..+ =.+++.++|+|||-.++-++......| .++|.|+--
T Consensus 10 ~~lD~~LgGGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g-~~vlYidtE 60 (224)
T PRK09361 10 KSLDELLGGGIERGTITQIYGPPGSGKTNICIQLAVEAARQG-KKVIYIDTE 60 (224)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCC
T ss_conf 899986269988887999989999859999999999999749-909996787
No 368
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.87 E-value=0.69 Score=23.63 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=4.6
Q ss_pred HHHCCCEEEEEC
Q ss_conf 430598079965
Q gi|255764515|r 147 PAWESERFIELT 158 (458)
Q Consensus 147 ~~~~~~~~l~LT 158 (458)
++.+..++++.=
T Consensus 129 LA~~G~RVLvID 140 (387)
T TIGR03453 129 LALRGYRVLAID 140 (387)
T ss_pred HHHCCCCEEEEE
T ss_conf 997799889995
No 369
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=87.59 E-value=0.75 Score=23.41 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=6.9
Q ss_pred HHHHCCCEEEEECCCC
Q ss_conf 5430598079965840
Q gi|255764515|r 146 KPAWESERFIELTGTP 161 (458)
Q Consensus 146 ~~~~~~~~~l~LTgTP 161 (458)
.++.+..++++.=--|
T Consensus 145 ~LA~~G~RVLlIDLDP 160 (405)
T PRK13869 145 YLALQGYRVLAVDLDP 160 (405)
T ss_pred HHHHCCCCEEEEECCH
T ss_conf 9997799889996456
No 370
>KOG0734 consensus
Probab=87.51 E-value=0.7 Score=23.57 Aligned_cols=44 Identities=30% Similarity=0.262 Sum_probs=22.7
Q ss_pred HCCCCCCEEEEEEEEC--------CC---HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0378775289999858--------99---68999999999999999998554137
Q gi|255764515|r 411 QAGFKRAVFVYYLIAQ--------NT---IDELVLQRLRTKSTIQDLLLNALKKE 454 (458)
Q Consensus 411 R~Gq~~~v~v~~li~~--------~t---ide~i~~~~~~K~~~~~~~~~~~~~~ 454 (458)
..|..+.|-...+.+. .| ||..|-+++++--+.+..+|...+||
T Consensus 655 ~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kE 709 (752)
T KOG0734 655 KFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKE 709 (752)
T ss_pred HCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7086554364342235788887800588899999999999999999999987899
No 371
>PTZ00293 thymidine kinase; Provisional
Probab=87.50 E-value=1.8 Score=21.13 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=51.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEE
Q ss_conf 99958899868999999999997599949999160465699999999855888815999858978988873077986998
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVI 100 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~ 100 (458)
++..+|=+|||=..|--+..... ..++++||-|..--. +. .-.+..+.+.. +. .+.
T Consensus 8 VI~GPMFSGKTTELIRRlrR~~i-a~kkvlVIK~a~DtR--Y~----------~~~V~THD~~~------i~-----a~~ 63 (284)
T PTZ00293 8 LIIGPMFAGKTTELMRRVKREIH-ARRSCFVIKYSKDTR--YD----------EHNVASHDQLM------LR-----AQA 63 (284)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCCC--CC----------CCCEECCCCCE------EE-----CCH
T ss_conf 99807237805999999999997-797399981898887--89----------98556789973------51-----200
Q ss_pred CCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE--EECCC
Q ss_conf 0642023344200011322044045310024654311567777665430598079--96584
Q gi|255764515|r 101 NFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFI--ELTGT 160 (458)
Q Consensus 101 s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l--~LTgT 160 (458)
....+.... .....+|.|-|||+|.+.+ ....+..+....+.++ +|-|+
T Consensus 64 ~v~~L~ei~---~~~~~~DVIgIDEaQFF~D--------Lvdf~e~lAn~GK~VIVAGLDGD 114 (284)
T PTZ00293 64 AVSQLTEVR---DTWKRFDVLAIDEGQFFSD--------LVDFCNTAADAGKVVMVSALDGD 114 (284)
T ss_pred HHHHHHHHH---HHHHCCCEEEEECHHCCCC--------HHHHHHHHHHCCCEEEEEECCCC
T ss_conf 140699998---7753588899970341623--------89999999868998999945876
No 372
>KOG0736 consensus
Probab=87.44 E-value=0.47 Score=24.65 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=4.6
Q ss_pred EEEECCCCHH
Q ss_conf 7996584023
Q gi|255764515|r 154 FIELTGTPSP 163 (458)
Q Consensus 154 ~l~LTgTPi~ 163 (458)
.++|+|+|..
T Consensus 433 ~vLLhG~~g~ 442 (953)
T KOG0736 433 SVLLHGPPGS 442 (953)
T ss_pred EEEEECCCCC
T ss_conf 7998679998
No 373
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=87.41 E-value=0.8 Score=23.23 Aligned_cols=51 Identities=25% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-----CCEEEEECCHH
Q ss_conf 789999999996798099958899868999999999997599-----94999916046
Q gi|255764515|r 5 PHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGE-----KSVLVIAPLRV 57 (458)
Q Consensus 5 p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~-----~~~LIv~P~~l 57 (458)
+-|.+||.-- ..+.|+++.=|+|||...+-=+-.....|+ .+.|||+=++.
T Consensus 4 ~~Q~~AI~~~--G~nILVsAsAGSGKTaVLVERii~~i~~gE~pvdiDrLLVVTFTna 59 (1295)
T TIGR02785 4 DEQWQAIYDR--GQNILVSASAGSGKTAVLVERIIKKILRGENPVDIDRLLVVTFTNA 59 (1295)
T ss_pred HHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 8889999636--8864765322666147899999999647887702021036788899
No 374
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=87.34 E-value=1.8 Score=21.08 Aligned_cols=11 Identities=9% Similarity=0.322 Sum_probs=4.8
Q ss_pred CCCEEEEEECC
Q ss_conf 88159998589
Q gi|255764515|r 73 SHMNISVITGT 83 (458)
Q Consensus 73 ~~~~~~~~~g~ 83 (458)
|...+.+++|.
T Consensus 74 ~~~pvIviT~~ 84 (469)
T PRK10923 74 PMLPVIIMTAH 84 (469)
T ss_pred CCCCEEEEECC
T ss_conf 89978999899
No 375
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=87.24 E-value=0.85 Score=23.08 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=6.3
Q ss_pred HHHHHHCCCEEEEEC
Q ss_conf 665430598079965
Q gi|255764515|r 144 LAKPAWESERFIELT 158 (458)
Q Consensus 144 l~~~~~~~~~~l~LT 158 (458)
...++.+..++++.=
T Consensus 128 A~~LAl~G~RVLlID 142 (388)
T PRK13705 128 AQDLALKGLRVLLVE 142 (388)
T ss_pred HHHHHHCCCEEEEEE
T ss_conf 999997799089995
No 376
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.13 E-value=1.9 Score=21.00 Aligned_cols=17 Identities=6% Similarity=-0.148 Sum_probs=7.4
Q ss_pred HHHHCCCCCCEEEEEEC
Q ss_conf 99855888815999858
Q gi|255764515|r 66 VQRWSNFSHMNISVITG 82 (458)
Q Consensus 66 i~kf~~~~~~~~~~~~g 82 (458)
+..+...|.+.=..+.+
T Consensus 27 l~~~L~Dp~VtEI~iN~ 43 (320)
T PRK13894 27 LLAALNDPKTVEIMLNA 43 (320)
T ss_pred HHHHHCCCCCEEEEECC
T ss_conf 99971799967999869
No 377
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=87.01 E-value=0.53 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=21.2
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9588998689999999999975999
Q gi|255764515|r 23 WASMGSGKTVSVLTALSYIHLWGEK 47 (458)
Q Consensus 23 ~~~~G~GKT~~al~~~~~l~~~~~~ 47 (458)
+-|+|.|||+.+-+++..++..|..
T Consensus 4 GtDT~VGKT~~ss~La~~lk~~G~~ 28 (187)
T TIGR00347 4 GTDTGVGKTVVSSALAKKLKKAGYS 28 (187)
T ss_pred EEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 2245861789989999999975985
No 378
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.87 E-value=1.9 Score=20.91 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=6.9
Q ss_pred CCCCCEEEEECCC
Q ss_conf 0178599990899
Q gi|255764515|r 379 QYGGNILVFFSLW 391 (458)
Q Consensus 379 ~~a~~~iI~~~~~ 391 (458)
|.| ++|+|+..+
T Consensus 378 qdA-DvV~fl~R~ 389 (421)
T TIGR03600 378 QDA-DVIGLIHRE 389 (421)
T ss_pred CCC-CEEEEECCC
T ss_conf 047-489996133
No 379
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.77 E-value=1 Score=22.55 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 0999588998689999999999975999499
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVL 50 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~L 50 (458)
.+++.++|+|||-++-+++.++.......++
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~~~~~~Ii 34 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHIL 34 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9998999997999999999853637883699
No 380
>KOG2543 consensus
Probab=86.72 E-value=1.7 Score=21.25 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHCCCE------EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 47899999999967980------999588998689999999999975999499991604656999999998558888159
Q gi|255764515|r 4 APHQTKIVDWILDHKRC------AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~------ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
+..|..-..-++.+.-+ .|....|+|||...-.++..+ +.+...+++-... .|..-+++-..... .
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecf--t~~~lle~IL~~~~--~ 82 (438)
T KOG2543 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECF--TYAILLEKILNKSQ--L 82 (438)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHC----CCCCEEEEHHHHC--CHHHHHHHHHHHHC--C
T ss_conf 68999999998478986665157996147874559999998603----7863054157751--67999999998735--6
Q ss_pred EEEECCHHHH-HHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 9985897898-887307798699806420233442000113220440453100246543115677776654305980799
Q gi|255764515|r 78 SVITGTVKQR-TKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIE 156 (458)
Q Consensus 78 ~~~~g~~~~r-~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~ 156 (458)
.-..|...+- ...+.. .......++...+. ..--.+|+|-+..++...+.--...++ +-.+.....-++.
T Consensus 83 ~d~dg~~~~~~~en~~d-~i~~l~q~~~~t~~-------d~~~~liLDnad~lrD~~a~ll~~l~~-L~el~~~~~i~ii 153 (438)
T KOG2543 83 ADKDGDKVEGDAENFSD-FIYLLVQWPAATNR-------DQKVFLILDNADALRDMDAILLQCLFR-LYELLNEPTIVII 153 (438)
T ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------CCEEEEEECCHHHHHCCCHHHHHHHHH-HHHHHCCCCEEEE
T ss_conf 78740555427999999-99999844776446-------744999974777663065078899998-9987377736999
Q ss_pred ECCCCHHHH
Q ss_conf 658402310
Q gi|255764515|r 157 LTGTPSPNG 165 (458)
Q Consensus 157 LTgTPi~n~ 165 (458)
+++++.++.
T Consensus 154 ls~~~~e~~ 162 (438)
T KOG2543 154 LSAPSCEKQ 162 (438)
T ss_pred EECCCCHHH
T ss_conf 832666777
No 381
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=0.6 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 980999588998689999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
.+.|+..++|+|||+.|=.++..|
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L 121 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL 121 (408)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 317998889975779999999984
No 382
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.66 E-value=1.9 Score=21.00 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 79809995889986899999999999759994999916046
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRV 57 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l 57 (458)
.++.++...+|+|||.....++......| .+++|.=|+.-
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg-~~~II~DpkGe 81 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARG-DRAIIYDPNGG 81 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCH
T ss_conf 27479988999988999999999999869-90999958854
No 383
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.63 E-value=0.96 Score=22.74 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCHHHHHHHHHH
Q ss_conf 099958-8998689999999999975999499991--604656999999
Q gi|255764515|r 20 CAIWAS-MGSGKTVSVLTALSYIHLWGEKSVLVIA--PLRVAQSVWTSE 65 (458)
Q Consensus 20 ~ll~~~-~G~GKT~~al~~~~~l~~~~~~~~LIv~--P~~l~~~~W~~E 65 (458)
.+++.. =|.|||=+|.+.+..+-..| +++|+|. |+.-+.+.+..|
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvStDPAhsL~d~f~~e 51 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAESG-KKVLLVSTDPAHSLGDVFDLE 51 (322)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHCCC
T ss_conf 999936885458999999999999759-907999848987447654230
No 384
>KOG1942 consensus
Probab=86.52 E-value=0.66 Score=23.74 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=27.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 980999588998689999999999975999499991604656999999998
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
+..|+|.++|+|||..|+++...| |.+- =.||-.-- ..+-.|++|
T Consensus 65 ravLlaGppgtGKTAlAlaisqEL---G~kv--PFcpmvgS-EvyS~EvKK 109 (456)
T KOG1942 65 RAVLLAGPPGTGKTALALAISQEL---GPKV--PFCPMVGS-EVYSNEVKK 109 (456)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCC--CCCCCCCH-HHHHHHHHH
T ss_conf 279973699876568999999974---7999--85666410-555434557
No 385
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.48 E-value=2 Score=20.79 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=6.7
Q ss_pred CCCEEECCCCCCCCC
Q ss_conf 322044045310024
Q gi|255764515|r 117 PFATIVVDESTKLKS 131 (458)
Q Consensus 117 ~~~~iIiDEaH~lkn 131 (458)
.+|.|++|=|-|+.|
T Consensus 221 ~~DvvliDTAGRLhn 235 (340)
T COG0552 221 GIDVVLIDTAGRLHN 235 (340)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 999999967554457
No 386
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=86.47 E-value=2 Score=20.78 Aligned_cols=12 Identities=0% Similarity=0.285 Sum_probs=5.6
Q ss_pred CEEECCCCCCCC
Q ss_conf 204404531002
Q gi|255764515|r 119 ATIVVDESTKLK 130 (458)
Q Consensus 119 ~~iIiDEaH~lk 130 (458)
|++++|..|.+.
T Consensus 204 DvLLIDDIQfl~ 215 (455)
T PRK12422 204 DALFIEDIEVFS 215 (455)
T ss_pred CEEEEEHHHHHH
T ss_conf 877631478872
No 387
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=86.32 E-value=1 Score=22.53 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHHCCCEEEEEC
Q ss_conf 65430598079965
Q gi|255764515|r 145 AKPAWESERFIELT 158 (458)
Q Consensus 145 ~~~~~~~~~~l~LT 158 (458)
..++.+..++++.=
T Consensus 129 ~~LAl~G~RVL~ID 142 (387)
T PHA02519 129 QWLALQGHRVLLIE 142 (387)
T ss_pred HHHHHCCCCEEEEE
T ss_conf 99997699689995
No 388
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=86.25 E-value=1 Score=22.65 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 88998689999999999975999499991
Q gi|255764515|r 25 SMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 25 ~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
-=|.|||-+|.+.+..+...| +++|+|-
T Consensus 7 KGGVGKTTvAaalA~~lA~~G-~rvLlvs 34 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEG-KKVLLVS 34 (217)
T ss_pred CCCCCHHHHHHHHHHHHHHCC-CEEEEEE
T ss_conf 996619999999999999689-9499995
No 389
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=86.12 E-value=0.4 Score=25.03 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 8747899999999967980999588998689999
Q gi|255764515|r 2 NLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVL 35 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al 35 (458)
.|.|-|.+||.+-.+ +.|+...-|+|||-.-.
T Consensus 4 ~LN~~QreaVaap~~--~~LvLAGAGSGKTRVL~ 35 (741)
T TIGR01075 4 GLNDKQREAVAAPPG--NLLVLAGAGSGKTRVLT 35 (741)
T ss_pred CCCHHHHHHHCCCCC--CCEEEEECCCCCCHHHH
T ss_conf 566577887403422--55487306888502478
No 390
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=86.02 E-value=1.1 Score=22.40 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHH
Q ss_conf 899868999999999997599949999--160465
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI--APLRVA 58 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv--~P~~l~ 58 (458)
=|.|||-+|+.++..+...| +++|+| -|.+.+
T Consensus 11 GGVGKTT~avNLA~~La~~G-~rVLlIDlDpQ~~l 44 (246)
T TIGR03371 11 GGVGRTTLTAALASALKLLG-EPVLAIDLDPQNLL 44 (246)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCH
T ss_conf 98549999999999999689-97899975999850
No 391
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=85.88 E-value=0.97 Score=22.73 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHH-HHHCCCCCEEEEE-----CCHHHHHHHHHHHHHHC
Q ss_conf 899868999999999-9975999499991-----60465699999999855
Q gi|255764515|r 26 MGSGKTVSVLTALSY-IHLWGEKSVLVIA-----PLRVAQSVWTSEVQRWS 70 (458)
Q Consensus 26 ~G~GKT~~al~~~~~-l~~~~~~~~LIv~-----P~~l~~~~W~~Ei~kf~ 70 (458)
-|+|||=++--++.+ +.....+++|.|+ |++. +| -.-+-.-.
T Consensus 111 QGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~--~Q-L~~Lg~Q~ 158 (439)
T TIGR00959 111 QGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAI--EQ-LKVLGEQV 158 (439)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHH--HH-HHHHHHHC
T ss_conf 78857889999999999986389703403210347899--99-99976752
No 392
>KOG0733 consensus
Probab=85.75 E-value=1.7 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=17.8
Q ss_pred CCEEEEE-CCCCCHHHHHHHHHHHH
Q ss_conf 9809995-88998689999999999
Q gi|255764515|r 18 KRCAIWA-SMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~-~~G~GKT~~al~~~~~l 41 (458)
++|+|.| ++|.|||..|=+++.++
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733 223 PRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 9751644899864789999975212
No 393
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=85.51 E-value=0.9 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7980999588998689999999999
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..+.|+..++|+|||+.|=.++..+
T Consensus 109 KsNILliGPTG~GKTlla~tLAk~l 133 (411)
T PRK05342 109 KSNILLIGPTGSGKTLLAQTLARIL 133 (411)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4538998999977889999999986
No 394
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=85.45 E-value=2.3 Score=20.47 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=48.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEE
Q ss_conf 0999588998689999999999975-999499991604656999999998558888159998589789888730779869
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLY 98 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~ 98 (458)
..|..+.|+|||--.=+++...... ...++..+.+... .+.+...+.. +......+
T Consensus 37 l~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~-~~~~~~~l~~-------------~~~~~f~~--------- 93 (219)
T pfam00308 37 LFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEF-LNDFVDALRD-------------NKIEAFKK--------- 93 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHH-HHHHHHHHHC-------------CCHHHHHH---------
T ss_conf 699889999888999999999998499982888439999-9988999981-------------88889999---------
Q ss_pred EECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 98064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 99 VINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 99 i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
.....+++++|..|.+.+....+ ...+..+-.+... ...+++|+.
T Consensus 94 ---------------~l~~~d~l~iDDi~~l~~~~~~e-e~lf~l~N~~~~~-~~~lllts~ 138 (219)
T pfam00308 94 ---------------SYRNVDLLLIDDIQFLAGKEKTQ-EEFFHTFNALHEN-NKQIVLTSD 138 (219)
T ss_pred ---------------HHHHCCHHHHCCHHHHCCCHHHH-HHHHHHHHHHHHC-CCEEEEECC
T ss_conf ---------------97632336522367656864789-9999999999972-986999779
No 395
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=85.43 E-value=2.1 Score=20.70 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=26.5
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 679809995889986899999999999759994999916046
Q gi|255764515|r 16 DHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRV 57 (458)
Q Consensus 16 ~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l 57 (458)
+++..++..++|+|||.....++......+ ..++|+=|+.-
T Consensus 14 ~~~H~lviG~tGsGKT~~i~~~i~~~~~~~-~s~iv~DpKGe 54 (386)
T pfam10412 14 ETQHILIVGTTGTGKTQALRELLDQIRARG-DRAIIYDPTGT 54 (386)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCH
T ss_conf 767589988999988879999999999779-91999958736
No 396
>KOG0741 consensus
Probab=85.41 E-value=0.77 Score=23.33 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 98099958899868999999999997599949999160
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
++.||..++|+|||++|=-+-.+|+.+ .|-+|=-|-
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNAr--ePKIVNGPe 292 (744)
T KOG0741 257 KGILLYGPPGTGKTLIARQIGKMLNAR--EPKIVNGPE 292 (744)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCCCHH
T ss_conf 357887799987018999987874579--986347578
No 397
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=85.36 E-value=1.6 Score=21.46 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98099958-899868999999999997599
Q gi|255764515|r 18 KRCAIWAS-MGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 18 ~~~ll~~~-~G~GKT~~al~~~~~l~~~~~ 46 (458)
++.+|+.+ -|+|||..+++++..|..+|.
T Consensus 2 kgilIAa~~SgsGKTtvt~gL~~aL~~rG~ 31 (432)
T PRK13896 2 DGVVLAGTSSGVGKTVATLAVLQALADAGY 31 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 628997789999899999999999997849
No 398
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=85.31 E-value=1.5 Score=21.50 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=7.3
Q ss_pred ECCCCCHHHHHHHHHHH
Q ss_conf 08998986864456666
Q gi|255764515|r 388 FSLWWDLEEHQQMIERI 404 (458)
Q Consensus 388 ~~~~wn~~~~~Q~~gRi 404 (458)
|+-|=|...+.+.+.|.
T Consensus 352 y~WPGNvREL~n~iera 368 (441)
T PRK10365 352 YDWPGNIRELENAVERA 368 (441)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 99998999999999999
No 399
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=85.30 E-value=2.3 Score=20.43 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf 89999999996798--09995889986899999999999759-9949999160
Q gi|255764515|r 6 HQTKIVDWILDHKR--CAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIAPL 55 (458)
Q Consensus 6 ~Q~~~v~~~~~~~~--~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~P~ 55 (458)
.|.+..+++.+.+. ..+-.+=|=|||..+..++..+...+ ..+++|.+|.
T Consensus 218 ~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~ 270 (758)
T COG1444 218 EALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPT 270 (758)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999999970898359998677874768874999999973377208996797
No 400
>pfam09455 Cas_DxTHG CRISPR-associated (Cas) DxTHG family. Cas are a group of proteins associated with clustered regularly interspaced short palindromic repeats - CRISPS - of DNA found in nearly half of bacterial and archaeal genomes. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.
Probab=85.29 E-value=1.4 Score=21.80 Aligned_cols=134 Identities=9% Similarity=0.060 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH------------------------HHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 986899999999999759994999916046569------------------------99999998558888159998589
Q gi|255764515|r 28 SGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS------------------------VWTSEVQRWSNFSHMNISVITGT 83 (458)
Q Consensus 28 ~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~------------------------~W~~Ei~kf~~~~~~~~~~~~g~ 83 (458)
-++|.+++.++... .+..+++|++|-++... .-..++..+......++.++.|.
T Consensus 24 ~~~s~~s~~~l~~~--~~~dk~vi~~~dSl~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~V~V~P~v 101 (387)
T pfam09455 24 KVESLASASVLREA--LKPDKTVILLPDSLSTALQKLEDLVDDYKELILTKLEEKLENYEKEIKNFLNINNIDVIVLPSV 101 (387)
T ss_pred EECCCCCHHHHHHH--CCCCEEEEEEEHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 00022418999965--2887399998611054010232367888877666689999999998766523688609993661
Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHH----HCCCEEEEECC
Q ss_conf 78988873077986998064202334420001132204404531002465431156777766543----05980799658
Q gi|255764515|r 84 VKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPA----WESERFIELTG 159 (458)
Q Consensus 84 ~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~----~~~~~~l~LTg 159 (458)
.......+.++.. ..-+..+..+.+.+.. ...+-|++|=.|-+ |.-+.....+.+.+..+. .+.........
T Consensus 102 G~~~~~~f~g~~~--~~~~~~~~~l~~~l~~-~~~~ei~lD~thGi-Ny~~~~~~~a~~~~~~~~~~~~~~~v~l~~ynS 177 (387)
T pfam09455 102 GTYGNYYFDGDPD--DFFSFVYYSLLKRLEK-EGPDEIILDLTHGI-NYMPLLALEAARLALSLYAAAGRKKVSLEIYNS 177 (387)
T ss_pred CCCCCEEEECCHH--HHHHHHHHHHHHHHHC-CCCCEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 0022369947899--9999999999999860-79968999756760-179999999999999999976247864999837
Q ss_pred CCHHHHCC
Q ss_conf 40231001
Q gi|255764515|r 160 TPSPNGLI 167 (458)
Q Consensus 160 TPi~n~~~ 167 (458)
.|+..+..
T Consensus 178 dP~~~~~~ 185 (387)
T pfam09455 178 DPYGKSSK 185 (387)
T ss_pred CCCCCCCC
T ss_conf 78889986
No 401
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=85.22 E-value=1.4 Score=21.79 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=25.0
Q ss_pred HHHHHHHHHHC-----C-CEEEEECCCCCHHHHHHHHHHH
Q ss_conf 99999999967-----9-8099958899868999999999
Q gi|255764515|r 7 QTKIVDWILDH-----K-RCAIWASMGSGKTVSVLTALSY 40 (458)
Q Consensus 7 Q~~~v~~~~~~-----~-~~ll~~~~G~GKT~~al~~~~~ 40 (458)
|..|+..|+.+ + ..+|..+||.|||=.|=.+++.
T Consensus 160 QerAI~aLlaK~aSPfPQHiiLYGPPGVGKTTaARl~LEe 199 (616)
T TIGR02903 160 QERAIKALLAKLASPFPQHIILYGPPGVGKTTAARLALEE 199 (616)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 4689999997631888660785573388478999998762
No 402
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=85.14 E-value=1.3 Score=21.97 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE--EC
Q ss_conf 899868999999999997599949999--16
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI--AP 54 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv--~P 54 (458)
=|+|||-+++.++..|...| +++|+| =|
T Consensus 10 GGvGKTTtavnLA~aLA~~G-~rVllIDlDp 39 (261)
T pfam09140 10 GGSGKSTTAVHVAVALLYLG-ARVATIDLDL 39 (261)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCEEEEECCC
T ss_conf 98729999999999999889-9789997999
No 403
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=85.12 E-value=1.8 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=22.0
Q ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99967980999588998689999999999
Q gi|255764515|r 13 WILDHKRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 13 ~~~~~~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
.++.++..++-+++|+|||..+=.++..+
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99859977877989877799999999983
No 404
>PRK06904 replicative DNA helicase; Validated
Probab=84.70 E-value=2.3 Score=20.50 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=18.4
Q ss_pred CCCCCEEEEECCC--CCHHHH-HHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 0178599990899--898686-4456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSLW--WDLEEH-QQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~~--wn~~~~-~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+-.+ |+.... .+-+..+. -.-||.|.+-.|.+.+
T Consensus 408 qdA-D~V~~l~R~~~y~~~~~~~~~~~eli-vaKnR~G~~G~v~~~f 452 (472)
T PRK06904 408 QDA-DLIMFIYRDEVYNETTEDNKGVAEII-IGKQRNGPIGRVRLAF 452 (472)
T ss_pred HHC-CEEEEECCHHCCCCCCCCCCCCEEEE-EECCCCCCCCEEEEEE
T ss_conf 428-68999644200488876778837999-9747789861699998
No 405
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=84.33 E-value=1.4 Score=21.76 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=28.5
Q ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCHHHHHHHHH
Q ss_conf 099958-8998689999999999975999499991--60465699999
Q gi|255764515|r 20 CAIWAS-MGSGKTVSVLTALSYIHLWGEKSVLVIA--PLRVAQSVWTS 64 (458)
Q Consensus 20 ~ll~~~-~G~GKT~~al~~~~~l~~~~~~~~LIv~--P~~l~~~~W~~ 64 (458)
.+++.. =|.|||-+|.+.+..+-..| +++|+|. |++-+.+.+..
T Consensus 2 ~i~~~GKGGVGKTT~AaalA~~lA~~G-~kVLlvstDPahsLsd~f~~ 48 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQG-KKVLLVSTDPAHSLSDSFNQ 48 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHCC
T ss_conf 899968985548999999999999689-94999958986448898488
No 406
>PRK05748 replicative DNA helicase; Provisional
Probab=84.15 E-value=2.6 Score=20.13 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=19.9
Q ss_pred CCCCCEEEEECCC--CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 0178599990899--8986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~~--wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+..+ +++....+-+.-+. -.-||.|.+-.|...+
T Consensus 389 qdA-D~v~~l~R~~~y~~~~~~~~~~e~i-vaKnR~G~~g~v~~~f 432 (448)
T PRK05748 389 QDA-DIVAFLYRDDYYDEETENKNTIEII-IGKQRNGPVGTVRLAF 432 (448)
T ss_pred HHC-CEEEEECCHHHCCCCCCCCCEEEEE-EECCCCCCCCEEEEEE
T ss_conf 207-6898965343238888889827999-9726899860599998
No 407
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=84.04 E-value=1.5 Score=21.60 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=24.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8099958899868999999999997599949999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
...++.-=|.|||-|++.++..|-..| +++|+|
T Consensus 3 ~ia~yGKGGVGKTTTavNLAaALA~~G-kkVLlI 35 (292)
T PRK13230 3 QIAFYGKGGIGKSTTVCNLAAALSKSG-KKVIVV 35 (292)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEE
T ss_conf 799917998578989999999999879-959997
No 408
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=83.66 E-value=0.73 Score=23.45 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=19.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 999588998689999999999975
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLW 44 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~ 44 (458)
.+..+||+|||=.|-.++..|.++
T Consensus 4 ~ISGpPGSGktTvA~~lA~~Lsl~ 27 (173)
T TIGR02173 4 TISGPPGSGKTTVAKILAEKLSLK 27 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 873589686478999999863983
No 409
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=83.66 E-value=2.7 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 899868999999999997599
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~ 46 (458)
=|+|||=.++.++..|...|.
T Consensus 62 GGTGKTP~v~~La~~L~~~G~ 82 (332)
T PRK00313 62 GGTGKTPLILWLIEHCRRRGL 82 (332)
T ss_pred CCCCHHHHHHHHHHHHHHCCC
T ss_conf 887777999999999997799
No 410
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=83.64 E-value=2.7 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=11.2
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 999089989868644566662
Q gi|255764515|r 385 LVFFSLWWDLEEHQQMIERIG 405 (458)
Q Consensus 385 iI~~~~~wn~~~~~Q~~gRi~ 405 (458)
+.-|+-|=|...+...+.|..
T Consensus 353 L~~y~WPGNvREL~n~ierav 373 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAV 373 (457)
T ss_pred HHCCCCCCHHHHHHHHHHHHH
T ss_conf 956999979999999999999
No 411
>PRK08006 replicative DNA helicase; Provisional
Probab=83.62 E-value=2.7 Score=19.98 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=22.1
Q ss_pred CCCCCEEEEECCCC--CHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 01785999908998--986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSLWW--DLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~~w--n~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+..++ ++....+.+..+. ..-||.|.+-.|.+.+
T Consensus 410 qdA-D~V~~l~R~~~y~~~~~~~~~~eli-vaKnR~G~~G~v~l~f 453 (471)
T PRK08006 410 QDA-DLIMFIYRDEVYHENSDLKGIAEII-IGKQRNGPIGTVRLTF 453 (471)
T ss_pred HHC-CEEEEECCCCCCCCCCCCCCCEEEE-EECCCCCCCEEEEEEE
T ss_conf 428-6899975503357888878816999-9736889860699998
No 412
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=83.53 E-value=2.8 Score=19.96 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=17.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 980999588998689999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
.-..|..|-|+|||.++.+++..+
T Consensus 32 E~lgiVGESGsGKS~~~~aim~ll 55 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLL 55 (316)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 689998389788999999998466
No 413
>PRK08840 replicative DNA helicase; Provisional
Probab=83.46 E-value=2.8 Score=19.94 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCCCCEEEEECCC--CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEEE
Q ss_conf 0178599990899--89868644566662022020378775289999
Q gi|255764515|r 379 QYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 423 (458)
Q Consensus 379 ~~a~~~iI~~~~~--wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~l 423 (458)
|.| ++|+|+..+ ++|....+.+..+.- .-||.|.+-.|...+-
T Consensus 403 qdA-D~V~~l~R~~~y~~~~~~~~~~eliv-aKnR~G~~G~v~l~f~ 447 (464)
T PRK08840 403 QDA-DLIMFIYRDEVYNPDSPLKGTAEIII-GKQRNGPIGSVRLTFQ 447 (464)
T ss_pred HHC-CEEEEECCHHHCCCCCCCCCEEEEEE-ECCCCCCCEEEEEEEE
T ss_conf 438-68999644310489888788069999-7268898606999985
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=83.37 E-value=2.3 Score=20.48 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0999588998689999999999975999499991
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
.+++.+.|+|||-.|=.+...+...+.+ +.|+.
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~~~-~~vis 34 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIG-PVVIS 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEE
T ss_conf 8998989778999999999998464885-39995
No 415
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=83.22 E-value=2.5 Score=20.24 Aligned_cols=46 Identities=24% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999679-----8099958899868999999999997599949999160
Q gi|255764515|r 9 KIVDWILDHK-----RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPL 55 (458)
Q Consensus 9 ~~v~~~~~~~-----~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~ 55 (458)
..++.++..+ =.+++.++|+|||-.++-++......+ .+++.|.--
T Consensus 6 ~~lD~vLgGGi~~G~it~i~G~pG~GKStl~lq~a~~~~~~g-~~v~YidtE 56 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQG-KKVAYIDTE 56 (218)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECC
T ss_conf 789998569987887999989999849999999999986369-869999665
No 416
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=83.19 E-value=1.8 Score=21.15 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=28.3
Q ss_pred CEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCHHHHHHHHH
Q ss_conf 809995-88998689999999999975999499991--60465699999
Q gi|255764515|r 19 RCAIWA-SMGSGKTVSVLTALSYIHLWGEKSVLVIA--PLRVAQSVWTS 64 (458)
Q Consensus 19 ~~ll~~-~~G~GKT~~al~~~~~l~~~~~~~~LIv~--P~~l~~~~W~~ 64 (458)
|.+++. -=|.|||-+|.+.+..+-..| +++|+|. |+.-+.+.+..
T Consensus 2 r~i~~~GKGGVGKTT~AaA~A~~~A~~G-~rvLlvStDPAhsL~D~~~~ 49 (304)
T pfam02374 2 RWIFFGGKGGVGKTTVSCATAVRLSEQG-KKVLLVSTDPAHSLSDSFNQ 49 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHCC
T ss_conf 1999957985748999999999999589-92999946972148898488
No 417
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=83.12 E-value=1.8 Score=21.03 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=24.3
Q ss_pred EEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9995-88998689999999999975999499991
Q gi|255764515|r 21 AIWA-SMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 21 ll~~-~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
++.. .+|-|||.+|..++..+-..+.+++|+|=
T Consensus 39 ~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVD 72 (207)
T TIGR03018 39 MVTSSLPGEGKSFTAINLAISLAQEYDKTVLLID 72 (207)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9978999998899999999999972498599995
No 418
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=83.10 E-value=1.8 Score=21.15 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899868999999999997599949999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
=|.|||-+++.++..|-..| +++|+|
T Consensus 9 GGVGKTTtsvNLA~aLA~~G-krVlli 34 (269)
T pfam00142 9 GGIGKSTTSQNTSAALAEMG-KKVLIV 34 (269)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CEEEEE
T ss_conf 97688999999999999879-909998
No 419
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=82.87 E-value=1.8 Score=21.11 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9958899868999999999997599949999
Q gi|255764515|r 22 IWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 22 l~~~~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
+..-=|.|||-+++.++..|...| +++|+|
T Consensus 6 i~GKGGVGKTTtavNLA~aLa~~G-kkVlli 35 (270)
T cd02040 6 IYGKGGIGKSTTTQNLSAALAEMG-KKVMIV 35 (270)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC-CEEEEE
T ss_conf 979985778999999999999879-949998
No 420
>PRK07004 replicative DNA helicase; Provisional
Probab=82.81 E-value=2.8 Score=19.89 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCCCCEEEEECCC--CCHHHHHHHHHHHHCCCCHHCCCCCCEEEEE
Q ss_conf 0178599990899--8986864456666202202037877528999
Q gi|255764515|r 379 QYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 422 (458)
Q Consensus 379 ~~a~~~iI~~~~~--wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~~ 422 (458)
|.| ++|+|+-.+ +++....+.+..+.- --||.|.+-.|...+
T Consensus 398 QDA-DvV~fL~r~~~y~~~~~~~~~~e~iv-aK~R~G~~g~v~l~f 441 (460)
T PRK07004 398 QDA-DVILFIYRDEVYNPDSPDKGTAEIII-GKQRNGPIGPVRLTF 441 (460)
T ss_pred HCC-CEEEEECCCCCCCCCCCCCCEEEEEE-ECCCCCCCEEEEEEE
T ss_conf 207-78999754101589988888169999-736889960699998
No 421
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=1.8 Score=21.14 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=7.4
Q ss_pred CEEEEECCCC
Q ss_conf 8079965840
Q gi|255764515|r 152 ERFIELTGTP 161 (458)
Q Consensus 152 ~~~l~LTgTP 161 (458)
.-++.+.||+
T Consensus 287 ~gviviaaTN 296 (596)
T COG0465 287 EGVIVIAATN 296 (596)
T ss_pred CCEEEECCCC
T ss_conf 7548852678
No 422
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=82.61 E-value=0.66 Score=23.72 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=5.5
Q ss_pred EEEECCCCHHHHCCC
Q ss_conf 799658402310010
Q gi|255764515|r 154 FIELTGTPSPNGLID 168 (458)
Q Consensus 154 ~l~LTgTPi~n~~~e 168 (458)
++.=-+-|+..+..|
T Consensus 227 vi~Ppa~piITsAad 241 (637)
T COG4646 227 VIAPPAAPIITSAAD 241 (637)
T ss_pred CCCCCCCCCCCCHHH
T ss_conf 248986641345687
No 423
>PRK05642 DNA replication initiation factor; Validated
Probab=82.61 E-value=3 Score=19.74 Aligned_cols=92 Identities=13% Similarity=0.162 Sum_probs=46.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
..|..+.|+|||-..-+++......+ .+++.+ |..-..+ ..-|+- .
T Consensus 48 l~i~G~~G~GKTHLL~A~~~~~~~~~-~~~~yl-~~~~~~~-~~~~~~------------------------~------- 93 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYL-PLAELLD-RGPELL------------------------D------- 93 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEE-EHHHHHH-HHHHHH------------------------H-------
T ss_conf 89988999988999999999998079-967997-8999875-449998------------------------6-------
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 80642023344200011322044045310024654311567777665430598079965840
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTP 161 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTP 161 (458)
....+++|++|-.|.+.+....+ ...+..+-.+.. +...+++||+-
T Consensus 94 --------------~l~~~d~l~IDDi~~i~g~~~~e-~~lF~l~N~~~~-~~~~llits~~ 139 (234)
T PRK05642 94 --------------NLEQYELVCIDDLDVIAGKADWE-EALFHLFNRLRD-SGRRLLLAASK 139 (234)
T ss_pred --------------HHHHCCEEEEECHHHHCCCHHHH-HHHHHHHHHHHH-CCCEEEEECCC
T ss_conf --------------24227989893645546885999-999999999998-39959995787
No 424
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=82.54 E-value=3 Score=19.72 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=17.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 0999588998689999999999
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l 41 (458)
++|+.+.|+|||+.+|-++...
T Consensus 4 ~~l~g~gG~GKS~lal~lAl~v 25 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9998089988899999999999
No 425
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=82.37 E-value=0.23 Score=26.48 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCHHHHH-HHHH----HHHCCCEEEEECCCCCHHHH--HHHHHH
Q ss_conf 7478999-9999----99679809995889986899--999999
Q gi|255764515|r 3 LAPHQTK-IVDW----ILDHKRCAIWASMGSGKTVS--VLTALS 39 (458)
Q Consensus 3 L~p~Q~~-~v~~----~~~~~~~ll~~~~G~GKT~~--al~~~~ 39 (458)
+.||..+ .|+| +-+.+=++|..++|+|||-+ ||+++.
T Consensus 11 fgsy~~~~~IDFt~~~l~~~gLFlI~G~TGAGKSTIlDAItfAL 54 (1047)
T PRK10246 11 LNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLAL 54 (1047)
T ss_pred CCCCCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 01788984674898645668878888999998899999999995
No 426
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=81.90 E-value=2.6 Score=20.17 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCCEEEEECCHH
Q ss_conf 7980999588998689999999999975----9994999916046
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYIHLW----GEKSVLVIAPLRV 57 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l~~~----~~~~~LIv~P~~l 57 (458)
++..++...-|+|||++.....-.+... ....+|||+.+..
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~a 60 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKA 60 (1139)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHH
T ss_conf 666899966889842169999999997258998557234406388
No 427
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=81.84 E-value=2.5 Score=20.24 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=23.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 809995889986899999999999759994999916
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
+..++.++|+|||......+..|..+ .++-||+=
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~--~~~aVI~~ 48 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDE--YKIAVITG 48 (202)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 99961799867899999999999752--77689964
No 428
>KOG0732 consensus
Probab=81.53 E-value=0.63 Score=23.84 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=26.8
Q ss_pred CCCEEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEEEC--CHHHHHHHHHHHHH
Q ss_conf 79809995-889986899999999999759994999916--04656999999998
Q gi|255764515|r 17 HKRCAIWA-SMGSGKTVSVLTALSYIHLWGEKSVLVIAP--LRVAQSVWTSEVQR 68 (458)
Q Consensus 17 ~~~~ll~~-~~G~GKT~~al~~~~~l~~~~~~~~LIv~P--~~l~~~~W~~Ei~k 68 (458)
-+|++|.+ ++|+|||++|-+.+.... .+..++..-.- +-++ +.|..|.++
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s-~~~~kisffmrkgaD~l-skwvgEaER 350 (1080)
T KOG0732 298 PPRGVLFHGPPGTGKTLMARALAAACS-RGNRKISFFMRKGADCL-SKWVGEAER 350 (1080)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCHHHHCCCHHH-CCCCCCHHH
T ss_conf 986323028998725688886665405-41102024431484433-254475778
No 429
>KOG2028 consensus
Probab=81.30 E-value=3.4 Score=19.45 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.0
Q ss_pred CCEEEEECCCCCHHHHH
Q ss_conf 98099958899868999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSV 34 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~a 34 (458)
+..++..++|+|||-.|
T Consensus 163 pSmIlWGppG~GKTtlA 179 (554)
T KOG2028 163 PSMILWGPPGTGKTTLA 179 (554)
T ss_pred CCEEEECCCCCCHHHHH
T ss_conf 70588669987658899
No 430
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=81.23 E-value=2.1 Score=20.64 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=23.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 80999588998689999999999975999499991604
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLR 56 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~ 56 (458)
..+++.++|+|||..|-+++..+.. ....+++.-.+
T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~--~~~~~i~~dm~ 40 (168)
T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFG--DERALIRIDMS 40 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC--CCCCEEEECCC
T ss_conf 9998898998999999999999679--85344885575
No 431
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=80.99 E-value=3.5 Score=19.38 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=9.5
Q ss_pred HCCCCCEEEEHHHHHHHH
Q ss_conf 124884034222367888
Q gi|255764515|r 317 EKANAAPIIVAYHFNSDL 334 (458)
Q Consensus 317 ~~~~~~kviif~~~~~~~ 334 (458)
.+..|--|++-+|-...+
T Consensus 188 A~eqGc~iL~VTHD~RIl 205 (220)
T TIGR02982 188 AREQGCTILLVTHDNRIL 205 (220)
T ss_pred HHHHCCEEEEEECCCCHH
T ss_conf 877198899983673120
No 432
>PHA02518 ParA-like protein; Provisional
Probab=80.94 E-value=3.5 Score=19.37 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHHHHHHHHH
Q ss_conf 899868999999999997599949999--1604656999999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI--APLRVAQSVWTSE 65 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv--~P~~l~~~~W~~E 65 (458)
=|.|||-+|+.++..+...| +++|+| =|..-.. .|...
T Consensus 10 GGvGKTT~a~nLA~~la~~G-~~VlliD~DpQ~s~~-~w~~~ 49 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADG-HKVLLVDLDPQGSST-DWAEA 49 (211)
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHH-HHHHH
T ss_conf 99749999999999999789-948999779996788-99985
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=80.84 E-value=2.4 Score=20.38 Aligned_cols=33 Identities=33% Similarity=0.288 Sum_probs=22.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999588998689999999999975999499991
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
++..-=|+|||..|-..+..+..++...+|+|=
T Consensus 4 aI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 4 AITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 996599765899999999999864895499994
No 434
>PRK07263 consensus
Probab=80.79 E-value=3.5 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=8.7
Q ss_pred CHHCCCCCCEEEEE
Q ss_conf 02037877528999
Q gi|255764515|r 409 QRQAGFKRAVFVYY 422 (458)
Q Consensus 409 ~hR~Gq~~~v~v~~ 422 (458)
-||.|.+-.|.+.+
T Consensus 424 KnR~G~~G~v~~~f 437 (453)
T PRK07263 424 KNRAGARGTVKLMF 437 (453)
T ss_pred CCCCCCCEEEEEEE
T ss_conf 67899860699998
No 435
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=80.57 E-value=1.8 Score=21.17 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=17.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 80999588998689999999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l 41 (458)
+.+|-.++|+|||..+-+++..+
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~ 23 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSL 23 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98789899876999999999995
No 436
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=80.34 E-value=2.5 Score=20.21 Aligned_cols=56 Identities=21% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHCCCEEE-EECCCCCHHHHHHHHHH-----------------------HHHHC----CCCCEEEEECCHHHHH--H
Q ss_conf 99996798099-95889986899999999-----------------------99975----9994999916046569--9
Q gi|255764515|r 12 DWILDHKRCAI-WASMGSGKTVSVLTALS-----------------------YIHLW----GEKSVLVIAPLRVAQS--V 61 (458)
Q Consensus 12 ~~~~~~~~~ll-~~~~G~GKT~~al~~~~-----------------------~l~~~----~~~~~LIv~P~~l~~~--~ 61 (458)
+..++..||.+ +.++|+|||..+...+. .|... ...++++++|++.+.+ -
T Consensus 1488 n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1488 NEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred HHHHHCCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHCEEECCCCEEEECCCCCHHHEEE
T ss_conf 99874063499978999751011263666543001567751124577889999986401523688279766742132178
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|255764515|r 62 WTSEVQ 67 (458)
Q Consensus 62 W~~Ei~ 67 (458)
+.+||+
T Consensus 1568 FcDeIn 1573 (3164)
T COG5245 1568 FCDEIN 1573 (3164)
T ss_pred EEECCC
T ss_conf 731147
No 437
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=80.20 E-value=3.7 Score=19.22 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=14.3
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 0999588998689999999
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTAL 38 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~ 38 (458)
+.|..|-|+||++.|-++.
T Consensus 36 ~GLVGESGSGKSLiAK~Ic 54 (330)
T COG4170 36 RGLVGESGSGKSLIAKAIC 54 (330)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 4334468886428999986
No 438
>KOG0743 consensus
Probab=79.89 E-value=1 Score=22.53 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=6.7
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 566541248840342
Q gi|255764515|r 312 LEVIIEKANAAPIIV 326 (458)
Q Consensus 312 l~~il~~~~~~kvii 326 (458)
|..++-..+++.||+
T Consensus 277 Lr~LL~~t~~kSIiv 291 (457)
T KOG0743 277 LRHLLLATPNKSILL 291 (457)
T ss_pred HHHHHHHCCCCCEEE
T ss_conf 999997289971899
No 439
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=79.89 E-value=2.7 Score=20.06 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899868999999999997599949999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
=|.|||-.+..++..+...| .++|+|
T Consensus 9 GGvGKtt~~~~la~~~a~~g-~~vl~i 34 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRG-KRVLLI 34 (104)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CEEEEE
T ss_conf 98768999999999999779-929999
No 440
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=79.84 E-value=3.8 Score=19.15 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=51.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.||+.|||.||+=.++-++..+... ..++|+|+=---. .|...-.+|- .... ..+++
T Consensus 85 vLlgGePGIGKSTLLLQia~~la~~-~~~vLYvSGEES~-~QIk~RA~RL-g~~~--------------------~~l~l 141 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESP-EQIKLRADRL-GIST--------------------ENLYL 141 (372)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECHHHH-HHHHHHHHHH-CCCC--------------------CCCEE
T ss_conf 9982599886889999999999863-9938998245678-9999899985-8788--------------------77278
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 8064202334420001132204404531002465
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFR 133 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~ 133 (458)
.+-..+....... ...+++++|+|=.|.+.++.
T Consensus 142 ~set~le~Il~~i-~~~kP~~lIIDSIQT~~~~~ 174 (372)
T cd01121 142 LAETNLEDILASI-EELKPDLVIIDSIQTVYSSE 174 (372)
T ss_pred EECCCHHHHHHHH-HHHCCCEEEEECHHHCCCCC
T ss_conf 8435699999999-97199889995622020377
No 441
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=79.83 E-value=3.8 Score=19.15 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf 2044045310024654311567777665430598079965840231
Q gi|255764515|r 119 ATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPN 164 (458)
Q Consensus 119 ~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n 164 (458)
+.+|+||+..+-+ + ..-.+.. ...+ ..+.+-|-|.|-
T Consensus 61 ~~~iiDE~~~~~~-----g--~l~~~~~-~~~~-~~~~l~GDp~Q~ 97 (226)
T pfam01443 61 KILILDEYTLLPP-----G--YILLLAA-ISGA-KLVILFGDPLQI 97 (226)
T ss_pred CEEEECCCCCCCH-----H--HHHHHHH-CCCC-CEEEEECCCCCC
T ss_conf 8899896456681-----6--8999876-0688-679998287616
No 442
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=79.75 E-value=3.8 Score=19.13 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCC
Q ss_conf 980999588998689999999999975-9994999916046569999999985588881599985897898887307798
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAV 96 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~ 96 (458)
...++..++|+||++.|-.+- ..... ...|. |-+=.+.+.+. -.|.+-|. .....++|....+..++.
T Consensus 102 ~~vLi~GetGtGKel~A~~iH-~~s~r~~~~PF-I~~NCa~~~en-~~~~eLFG----~~kGaftGa~~~k~Glfe---- 170 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIH-ALSARRAEAPF-IAFNCAAYSEN-LQEAELFG----HEKGAFTGAQGGKAGLFE---- 170 (403)
T ss_pred CCEEEECCCCCCHHHHHHHHH-HHHHCCCCCCE-EEEEHHHHCCC-HHHHHHHC----CCCCEEECCCCCCCCHHE----
T ss_conf 847986688753889999999-86121358987-99777773767-77777732----000000256678676420----
Q ss_pred EEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6998064202334420001132204404531002465431156777766
Q gi|255764515|r 97 LYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALA 145 (458)
Q Consensus 97 i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~ 145 (458)
.-.=..+.+||.|++-- . .-.+..+.+.
T Consensus 171 ------------------~A~GGtLfLDEI~~LP~--~-~Q~kLl~~le 198 (403)
T COG1221 171 ------------------QANGGTLFLDEIHRLPP--E-GQEKLLRVLE 198 (403)
T ss_pred ------------------ECCCCEEEHHHHHHCCH--H-HHHHHHHHHH
T ss_conf ------------------52797776563653798--5-8999999987
No 443
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=79.62 E-value=3.2 Score=19.55 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCHHHHHH-HHHHHHHHCC----------CCCEEEEECC
Q ss_conf 7980999588998689999-9999999759----------9949999160
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVL-TALSYIHLWG----------EKSVLVIAPL 55 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al-~~~~~l~~~~----------~~~~LIv~P~ 55 (458)
++.+||=+.=|||||++-- -++..|...| ...+|||+=+
T Consensus 9 ~g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT 58 (1324)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFT 58 (1324)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHH
T ss_conf 64068874176148999999999999851512202443461212111222
No 444
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=79.60 E-value=2.9 Score=19.85 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=20.7
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9958899868999999999997599
Q gi|255764515|r 22 IWASMGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 22 l~~~~G~GKT~~al~~~~~l~~~~~ 46 (458)
-+-++|.|||+.+.+++..+...|.
T Consensus 5 ~GT~T~vGKT~vt~~L~~~l~~~G~ 29 (223)
T PRK00090 5 TGTDTGVGKTVVTAALAQALREQGY 29 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8689997699999999999997899
No 445
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=79.44 E-value=2.5 Score=20.21 Aligned_cols=32 Identities=34% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE--ECCHHH
Q ss_conf 899868999999999997599949999--160465
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI--APLRVA 58 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv--~P~~l~ 58 (458)
=|.|||-+++.++..|...|. ++|+| .|.+.+
T Consensus 11 GGVGKTT~t~nLa~aLa~~G~-rVLlID~Dpq~~l 44 (244)
T pfam06564 11 GGVGTTSLTAALGWALQQLGE-SVLVIDASPDNLL 44 (244)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCC
T ss_conf 986199999999999997799-5899968987421
No 446
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=79.42 E-value=3.9 Score=19.07 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=6.2
Q ss_pred EECCHHHHHHHHHH
Q ss_conf 52453689988899
Q gi|255764515|r 247 VPLPQPVMKQYHKF 260 (458)
Q Consensus 247 v~l~~~~~~~y~~~ 260 (458)
+.+++++.....+.
T Consensus 538 ~~~tp~~~~~i~~A 551 (815)
T PRK13873 538 VAVTPEVKEHIWSA 551 (815)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 88898999999999
No 447
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.39 E-value=3.9 Score=19.06 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=23.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0999588998689999999999975999499991
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
.+++.--|+|||=++--++.++..+| +++++||
T Consensus 100 im~vGlqGsGKTTT~aKLA~~~kk~g-~kv~lva 132 (433)
T PRK00771 100 ILLVGLQGSGKTTTAAKLARYFQKKG-LKVGVIC 132 (433)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 99973788978999999999999779-9467850
No 448
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=79.05 E-value=2.4 Score=20.37 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899868999999999997599949999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
=|.|||-+|..++..+...| .++|+|
T Consensus 8 GGVGKTT~a~nLA~~la~~G-~rVlli 33 (212)
T pfam01656 8 GGVGKTTLAANLARALAKRG-YRVLLI 33 (212)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 98069999999999999789-978998
No 449
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=78.76 E-value=4.1 Score=18.94 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.8
Q ss_pred CEEECCCCCCC
Q ss_conf 20440453100
Q gi|255764515|r 119 ATIVVDESTKL 129 (458)
Q Consensus 119 ~~iIiDEaH~l 129 (458)
|++++|..|.+
T Consensus 210 DvLliDDiqfl 220 (447)
T PRK00149 210 DVLLIDDIQFL 220 (447)
T ss_pred CEEEECHHHHH
T ss_conf 85432148886
No 450
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=78.74 E-value=1.5 Score=21.49 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=11.6
Q ss_pred CCCEEEEHHHHHHHHHHHHHC
Q ss_conf 884034222367888664100
Q gi|255764515|r 320 NAAPIIVAYHFNSDLARLQKA 340 (458)
Q Consensus 320 ~~~kviif~~~~~~~~~i~~~ 340 (458)
.+-..||.||-..-+.++...
T Consensus 191 ~~TsflvVTHD~~LA~k~~r~ 211 (221)
T TIGR02211 191 LNTSFLVVTHDLELAKKLDRV 211 (221)
T ss_pred CCCEEEEEECCHHHHHCCCEE
T ss_conf 391699983475787302102
No 451
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=78.71 E-value=3.3 Score=19.52 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=23.0
Q ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCH
Q ss_conf 798-0999588998689999999999975999499991604
Q gi|255764515|r 17 HKR-CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLR 56 (458)
Q Consensus 17 ~~~-~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~ 56 (458)
++. .+++..+|+|||..+-.+...+ +...+++|-|-.
T Consensus 11 ~Pkai~laG~pGAGKS~~~~~~~~~~---~~~~~v~In~D~ 48 (191)
T pfam06414 11 RPVAVLLGGQPGAGKTELARALLEEL---GGGNVVRIDPDE 48 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC---CCCCCEEECCHH
T ss_conf 98799995799888899999998753---789938971358
No 452
>PTZ00301 uridine kinase; Provisional
Probab=78.70 E-value=4.1 Score=18.93 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=23.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEEC
Q ss_conf 099958899868999999999997-59994999916
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHL-WGEKSVLVIAP 54 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~-~~~~~~LIv~P 54 (458)
.++|.+-|+|||-.|-.++..+.. .+...+.|++-
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~ 41 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICE 41 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 999688767899999999999876149980799836
No 453
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=78.60 E-value=4.1 Score=18.91 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=9.8
Q ss_pred CEEECCCCCCC
Q ss_conf 20440453100
Q gi|255764515|r 119 ATIVVDESTKL 129 (458)
Q Consensus 119 ~~iIiDEaH~l 129 (458)
.++|+|||.++
T Consensus 83 afl~iDE~~ri 93 (398)
T COG4128 83 AFLVIDEAWRI 93 (398)
T ss_pred CEEEEECHHHC
T ss_conf 58998403210
No 454
>KOG0243 consensus
Probab=78.53 E-value=1.1 Score=22.41 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=34.7
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHH-HHHHCCCEEEEECCCCHHHHCCCHHHHHHHC
Q ss_conf 404531002465431156777766-5430598079965840231001013467751
Q gi|255764515|r 122 VVDESTKLKSFRLRQGSKTARALA-KPAWESERFIELTGTPSPNGLIDLWGQIWFL 176 (458)
Q Consensus 122 IiDEaH~lkn~~~~~~s~~~~~l~-~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l 176 (458)
.+|-++|+ ..+.||..|.+. .+.-+++..+.+|..|-.-++.|-.+-|.+.
T Consensus 333 LVe~s~HI----PYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA 384 (1041)
T KOG0243 333 LVEHSGHI----PYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYA 384 (1041)
T ss_pred HHCCCCCC----CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 97069998----85077899999987189753689999479864088888899999
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=78.45 E-value=4.2 Score=18.89 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=33.8
Q ss_pred HHHHHHHHCC-----CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 9999999679-----80999588998689999999999975999499991604656999999998
Q gi|255764515|r 9 KIVDWILDHK-----RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQR 68 (458)
Q Consensus 9 ~~v~~~~~~~-----~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~k 68 (458)
++++.++..+ -.+++.++|+|||..+.-++......|. ++++|+--... .+|.+....
T Consensus 19 ~~lD~~l~GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~-~~~~~~~ee~~-~~~~~~~~~ 81 (241)
T PRK06067 19 EEIDRKLGGGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGK-RGLAITTENTS-KSYLKQMES 81 (241)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEECCCH-HHHHHHHHH
T ss_conf 5578650699779908999807998879999999999986798-29999942899-999999998
No 456
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=78.43 E-value=4.2 Score=18.88 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=21.4
Q ss_pred CCEEE-EECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98099-958899868999999999997599
Q gi|255764515|r 18 KRCAI-WASMGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 18 ~~~ll-~~~~G~GKT~~al~~~~~l~~~~~ 46 (458)
+++.+ +-|+|.|||+.+-+++..+...|.
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~ 32 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGY 32 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 369998279996499999999999996897
No 457
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=78.41 E-value=3.9 Score=19.06 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf 09995889986899999999999759-99499991
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWG-EKSVLVIA 53 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~-~~~~LIv~ 53 (458)
.++|.++|+|||-.|=.+...+.... ...+.+|+
T Consensus 2 IGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~ 36 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELIT 36 (220)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 89788998779999999999860026999489997
No 458
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=78.28 E-value=3.1 Score=19.66 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=24.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 09995889986899999999999759994999916
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAP 54 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P 54 (458)
.++.-++|.|||+.+.+++..++..|.+ +...=|
T Consensus 2 ~~~GTdT~VGKT~vt~~l~~~l~~~G~~-v~~~KP 35 (134)
T cd03109 2 MGFGTGTDIGKTVATAILARALKEKGYR-VAPLKP 35 (134)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEECH
T ss_conf 5752788876899999999999977991-778756
No 459
>CHL00175 minD septum-site determining protein; Validated
Probab=78.12 E-value=3.3 Score=19.52 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899868999999999997599949999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
=|.|||-++..++..|...| +++|+|
T Consensus 23 GGVGKTT~a~NLa~aLA~~G-~kVlli 48 (279)
T CHL00175 23 GGVGKTTTTANLGMSIARLG-YRVALI 48 (279)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 98448999999999999789-988999
No 460
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=78.12 E-value=2.3 Score=20.44 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=17.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 80999588998689999999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..|++.++|+|||-.|-..+..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47864799876888999999985
No 461
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=78.03 E-value=3 Score=19.71 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=22.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99958899868999999999997599949999
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
.+..-=|.|||-++..++..|...| +++|+|
T Consensus 4 aiyGKGGVGKTTts~NLaaaLA~~G-~rVl~i 34 (212)
T cd02117 4 AIYGKGGIGKSTTSQNLSAALAEMG-KKVLQV 34 (212)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-CEEEEE
T ss_conf 9988983568778999999999869-969999
No 462
>KOG0730 consensus
Probab=77.66 E-value=4.4 Score=18.74 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=15.5
Q ss_pred CEEEEECCCCCHHHHHHHHHH
Q ss_conf 809995889986899999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALS 39 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~ 39 (458)
+.|+..++|+|||..+=+.+.
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~ 240 (693)
T KOG0730 220 GLLLYGPPGTGKTFLVRAVAN 240 (693)
T ss_pred CCCCCCCCCCCHHHHHHHHHH
T ss_conf 744438999981899999999
No 463
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=77.41 E-value=3.2 Score=19.61 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 998689999999999975999
Q gi|255764515|r 27 GSGKTVSVLTALSYIHLWGEK 47 (458)
Q Consensus 27 G~GKT~~al~~~~~l~~~~~~ 47 (458)
|+|||=.++.++..+...|.+
T Consensus 68 GTGKTP~vi~L~~~L~~~G~k 88 (339)
T PRK01906 68 GTGKTPTVIALVDALRAAGFT 88 (339)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 875779999999999976995
No 464
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=77.30 E-value=2.5 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 80999588998689999999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..+++.++|+|||-.|-.++..+
T Consensus 52 h~lf~GPPG~GKTTlAriiAk~~ 74 (234)
T pfam05496 52 HVLLYGPPGLGKTTLANIIANEM 74 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 27887899998889999999840
No 465
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=77.13 E-value=2.7 Score=20.07 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=17.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 00246543115677776654305980799658402310
Q gi|255764515|r 128 KLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNG 165 (458)
Q Consensus 128 ~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~ 165 (458)
-+++..+...+|+.-.++ -..-+-++|.|-|-.+.
T Consensus 177 D~~DV~GQ~~AKrAleiA---AAGgHnLl~~GpPGtGK 211 (490)
T COG0606 177 DFKDVKGQEQAKRALEIA---AAGGHNLLLVGPPGTGK 211 (490)
T ss_pred CHHHHCCCHHHHHHHHHH---HHCCCCEEEECCCCCCH
T ss_conf 666643849999999999---84388678756998865
No 466
>KOG0921 consensus
Probab=77.03 E-value=4.6 Score=18.64 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHH-HHHHHC--CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH
Q ss_conf 9999967980999588998689999999-999975--9994999916046569999999985588881599985897898
Q gi|255764515|r 11 VDWILDHKRCAIWASMGSGKTVSVLTAL-SYIHLW--GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQR 87 (458)
Q Consensus 11 v~~~~~~~~~ll~~~~G~GKT~~al~~~-~~l~~~--~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r 87 (458)
++...+|+-.++-.++|+|||-+.--.+ +..... +...-.+||-+..+..+... ++|.......+.-..|...++
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisia--erva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLA--ERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHH--HHHHHHHHHHHCCCCCCCCCC
T ss_conf 998750750467602366631478899999876225442002100265421117788--988776677644532333221
Q ss_pred HHHHCCC-CCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 8873077-98699806420233442000113220440453100
Q gi|255764515|r 88 TKVLKTP-AVLYVINFENLGWLVQELKGTWPFATIVVDESTKL 129 (458)
Q Consensus 88 ~~~~~~~-~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~l 129 (458)
.....-. ..++.++.+-+.+-.+.- .+.-.++|+||.|..
T Consensus 465 ~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiher 505 (1282)
T KOG0921 465 DSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHER 505 (1282)
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHC--CCCCCCCCCHHHHHH
T ss_conf 22455543302320210555554401--245442342033330
No 467
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=76.83 E-value=4.4 Score=18.74 Aligned_cols=30 Identities=37% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9958899868999999999997599949999
Q gi|255764515|r 22 IWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 22 l~~~~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
++.|+|+|||=.+|.++..-...| +++..|
T Consensus 17 iYGp~G~GKTn~c~~~a~~a~~~G-k~v~Yi 46 (223)
T TIGR02237 17 IYGPPGSGKTNICLILAVNAARQG-KKVVYI 46 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 875899867899999999998618-958999
No 468
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=76.54 E-value=4 Score=18.99 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=21.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 099958899868999999999997599
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~ 46 (458)
++-+-|+|.|||+.+.+++..+...|.
T Consensus 6 FITGTDTdVGKT~vsaaL~~~l~~~G~ 32 (231)
T PRK12374 6 FITGTDTSVGKTVVSRALLQALASQGK 32 (231)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 998789995399999999999997899
No 469
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=76.53 E-value=4.7 Score=18.55 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=24.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0999588998689999999999975999499991
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
.+++.=.|+|||=++.-++.++...+ +++|+||
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~-~kvllVa 135 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKG-KKVLLVA 135 (451)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 99981567974868999999999749-9458985
No 470
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=76.46 E-value=3.8 Score=19.13 Aligned_cols=36 Identities=36% Similarity=0.382 Sum_probs=25.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE--CCHH
Q ss_conf 999588998689999999999975999499991--6046
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA--PLRV 57 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~--P~~l 57 (458)
.++.-=|.|||-.+..++.++...+ .++|+|- |.++
T Consensus 3 a~~GKGGvGKtt~~~~la~~l~~~g-~~vl~iD~Dp~dl 40 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAEKG-KPVLAIDADPDDL 40 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCC
T ss_conf 8988997749999999999999789-9699998989712
No 471
>KOG0729 consensus
Probab=76.45 E-value=2.1 Score=20.65 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=7.9
Q ss_pred CCCCCCEEEEE
Q ss_conf 45885589984
Q gi|255764515|r 358 NEGKIPLLFAH 368 (458)
Q Consensus 358 ~~~~~~vli~s 368 (458)
-.|.++||+++
T Consensus 313 pRGNIKVlmAT 323 (435)
T KOG0729 313 PRGNIKVLMAT 323 (435)
T ss_pred CCCCEEEEEEC
T ss_conf 88875898634
No 472
>PRK11823 DNA repair protein RadA; Provisional
Probab=76.39 E-value=4.8 Score=18.53 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=50.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
.||+.|||.||+=..+-++..+. ...++|+|+=---. .|...-.+|- .... ..+++
T Consensus 93 iLlgGePGIGKSTLlLQ~a~~la--~~~~vLYvSGEES~-~Qik~RA~RL-g~~~--------------------~~l~l 148 (454)
T PRK11823 93 VLIGGDPGIGKSTLLLQVAAALA--AGGKVLYVSGEESL-QQIKLRAERL-GLPS--------------------DNLYL 148 (454)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEECCCHHH-HHHHHHHHHH-CCCC--------------------CCCEE
T ss_conf 99507998889999999999985--59957998150157-8999999975-8888--------------------87378
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 8064202334420001132204404531002465
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFR 133 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~ 133 (458)
.+-..+........ ..+++++|+|=.|.+.++.
T Consensus 149 ~~et~l~~Il~~i~-~~~P~~lIIDSIQT~~~~~ 181 (454)
T PRK11823 149 LAETNLEDILATIE-EEKPDLVVIDSIQTMYSPE 181 (454)
T ss_pred EECCCHHHHHHHHH-HHCCCEEEEECHHEEEECC
T ss_conf 85368999999998-6099889994311154156
No 473
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=76.19 E-value=3.1 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 80999588998689999999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..++..++|+|||-.|-..+..+
T Consensus 53 H~Ll~GPPGlGKTTLA~iiA~E~ 75 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 05765889988999999999986
No 474
>PRK13909 putative recombination protein RecB; Provisional
Probab=75.98 E-value=4.9 Score=18.46 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=22.6
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECC
Q ss_conf 99958899868999999999997599--949999160
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGE--KSVLVIAPL 55 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~--~~~LIv~P~ 55 (458)
++-+.-|+|||.+...-...+...|. ..+|+|+=+
T Consensus 2 ~i~AsAGSGKT~~L~~R~l~Ll~~g~~p~~ILavTFT 38 (911)
T PRK13909 2 ALKASAGSGKTFALSVRFLALLFKGANPNEILALTFT 38 (911)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECHH
T ss_conf 7997670449999999999997389792448785568
No 475
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=75.88 E-value=3.6 Score=19.30 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899868999999999997599949999
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI 52 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv 52 (458)
=|.|||-+|..++..|-..| +++|+|
T Consensus 9 GGVGKTT~a~NLA~aLa~~g-~~vllv 34 (179)
T cd02036 9 GGVGKTTTTANLGTALAQLG-YKVVLI 34 (179)
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCEEEE
T ss_conf 98709999999999999779-918999
No 476
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=75.84 E-value=4.6 Score=18.65 Aligned_cols=14 Identities=14% Similarity=-0.092 Sum_probs=5.0
Q ss_pred HHHCCCCCCEEEEE
Q ss_conf 98558888159998
Q gi|255764515|r 67 QRWSNFSHMNISVI 80 (458)
Q Consensus 67 ~kf~~~~~~~~~~~ 80 (458)
+.+...|.+.=..+
T Consensus 16 ~~ll~D~~V~EI~i 29 (332)
T PRK13900 16 KNIFAEDGVNEISI 29 (332)
T ss_pred HHHHCCCCCEEEEE
T ss_conf 99960999879998
No 477
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=75.73 E-value=5 Score=18.42 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE-E-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCC
Q ss_conf 899868999999999997599949999-1-60465699999999855888815999858978988873077986998064
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI-A-PLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFE 103 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv-~-P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e 103 (458)
=|+|||-.++.++..+...|. ++++| + |..-+. .|.+...+-...+.. ..+.......
T Consensus 11 GG~GKtT~a~~la~~~~~~g~-~v~~iD~Dpq~s~~-~W~e~a~~~~~~~~~-~~v~~~~~~~----------------- 70 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGK-RVALFEADENRPLT-RWKENALRSNTWDPA-CEVYAADELP----------------- 70 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHH-HHHHHHHHCCCCCCC-CCEEECCCHH-----------------
T ss_conf 987699999999999997899-59999689986889-999876525898877-5234056525-----------------
Q ss_pred CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHC
Q ss_conf 2023344200011322044045310024654311567777665430598079965840231001013467751
Q gi|255764515|r 104 NLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFL 176 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l 176 (458)
.+....+. .....||+||||=.-.. +...+... ..+..++. |++-+|.|+|.-...+
T Consensus 71 ~l~~~~e~-~~~~~~D~VIIDtpg~~--------s~~~~~Ai---~~ADLVLI----P~qPSp~D~~~a~~tv 127 (231)
T PRK13849 71 LLEAAYED-AELQGFDYALADTHGGS--------SELNNTII---ASSNLLLI----PTMLTPLDIDEALSTY 127 (231)
T ss_pred HHHHHHHH-HHHCCCCEEEECCCCCC--------CHHHHHHH---HHCCEEEE----CCCCCHHHHHHHHHHH
T ss_conf 78999988-75369988998189977--------58999999---97898997----7999866799999999
No 478
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=75.54 E-value=5 Score=18.39 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=13.7
Q ss_pred HHHHCCCCCCEEEEEHHHCCCCCC------CCCCCCEEEEEC
Q ss_conf 764245885589984422111622------001785999908
Q gi|255764515|r 354 IQEWNEGKIPLLFAHPASCGHGLN------LQYGGNILVFFS 389 (458)
Q Consensus 354 i~~f~~~~~~vli~s~~~~~~Gln------L~~a~~~iI~~~ 389 (458)
++..+...+-|+++ +++.+.=++ +-..|-+-||+-
T Consensus 713 LKTlRKkN~~VvfA-TQSl~Di~~S~I~~aiiEqc~T~IfLP 753 (852)
T PRK13891 713 LKVLRKANCLVLMA-TQSLSDAANSGILDVIVESTATKIFLP 753 (852)
T ss_pred HHHHHHCCCEEEEE-CCCHHHHHCCCHHHHHHHHCCEEEECC
T ss_conf 99998718479997-688889853856899998588568767
No 479
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=75.44 E-value=2.6 Score=20.11 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 0999588998689999999999
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l 41 (458)
.+|+.++|+|||-.|+.++..+
T Consensus 7 i~i~GpTasGKs~la~~la~~~ 28 (304)
T PRK00091 7 IVLVGPTASGKTALAIELAKRL 28 (304)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998988658999999999987
No 480
>PRK08084 DNA replication initiation factor; Provisional
Probab=75.37 E-value=5.1 Score=18.36 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
..|..+.|+|||--.=++..+....+.....+ |..... .+..|+..
T Consensus 48 l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl--~~~~~~-~~~~~~l~------------------------------- 93 (235)
T PRK08084 48 IYLWGREGAGRSHLLHAACAELSQRGDAVGYV--PLDKRA-WFVPEVLE------------------------------- 93 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE--EHHHHH-HHHHHHHH-------------------------------
T ss_conf 99989999888999999999997079857998--779866-51799998-------------------------------
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 8064202334420001132204404531002465431156777766543059807996584
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGT 160 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgT 160 (458)
....+++|++|-.|.+ ......-...+..+-.+....+..+++||.
T Consensus 94 --------------~l~~~dll~iDDi~~i-~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~ 139 (235)
T PRK08084 94 --------------GMEQLSLVCIDNIECI-AGDELWEMAIFDLYNRILESGKTRLLITGD 139 (235)
T ss_pred --------------HHHHCCEEEEECHHHH-CCCHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf --------------7641898998274554-699789999999999999848966999679
No 481
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=75.19 E-value=3.7 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9986899999999999759994999
Q gi|255764515|r 27 GSGKTVSVLTALSYIHLWGEKSVLV 51 (458)
Q Consensus 27 G~GKT~~al~~~~~l~~~~~~~~LI 51 (458)
|.|||-.+..++..+...|.+-.+|
T Consensus 9 GvGKTT~a~~La~~la~~g~~Vl~v 33 (99)
T cd01983 9 GVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7768999999999999889969998
No 482
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=75.00 E-value=5.2 Score=18.31 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 999999999679809995889986899999999999759994999916046569999999
Q gi|255764515|r 7 QTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEV 66 (458)
Q Consensus 7 Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei 66 (458)
+..+-.........+|..|.|+||++.|=++ -........+.+.|--..+-.+.+..|+
T Consensus 19 ~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~I-H~~S~r~~~pfi~v~C~~l~~~~~e~~L 77 (325)
T PRK11608 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRL-HYLSSRWQGPFISLNCAALNENLLDSEL 77 (325)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHH-HHCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 9999999688999898898983799999999-9658867999778877989977889987
No 483
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=74.74 E-value=3 Score=19.75 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 80999588998689999999999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l 41 (458)
..+|..++|+|||..|-.++..+
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l 23 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAAL 23 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHC
T ss_conf 98999899756999999999980
No 484
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=74.67 E-value=3.6 Score=19.31 Aligned_cols=95 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHC-------------C
Q ss_conf 998689999999999975999499991604656999999998558888159998589789888730-------------7
Q gi|255764515|r 27 GSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLK-------------T 93 (458)
Q Consensus 27 G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~-------------~ 93 (458)
|.|||-++-++...|-..|++-+||=.--.+-----.--+++ ..-+--+.++.|.-+-...... +
T Consensus 13 GVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~--RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLPAsQ 90 (272)
T COG2894 13 GVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLEN--RIVYDLVDVIEGEATLNQALIKDKRLENLFLLPASQ 90 (272)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCC--EEEEEEHHHHCCCCCHHHHHHCCCCCCCEEECCCCC
T ss_conf 767431067789999973985999966767204466643420--156540134447663656764035678526614432
Q ss_pred CCCEEEECCCCHHHHHHHCCCCCCCCEEECC
Q ss_conf 7986998064202334420001132204404
Q gi|255764515|r 94 PAVLYVINFENLGWLVQELKGTWPFATIVVD 124 (458)
Q Consensus 94 ~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiD 124 (458)
..+--..+.|.+....+++.. ..||.||||
T Consensus 91 trdKdalt~E~v~~vv~eL~~-~~fDyIi~D 120 (272)
T COG2894 91 TRDKDALTPEGVKKVVNELKA-MDFDYIIID 120 (272)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-CCCCEEEEC
T ss_conf 367222799999999999976-699889964
No 485
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=74.48 E-value=4.8 Score=18.53 Aligned_cols=38 Identities=13% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999996798---0999588998689999999999975
Q gi|255764515|r 7 QTKIVDWILDHKR---CAIWASMGSGKTVSVLTALSYIHLW 44 (458)
Q Consensus 7 Q~~~v~~~~~~~~---~ll~~~~G~GKT~~al~~~~~l~~~ 44 (458)
+..||.++....+ .++..++|.|||-.+-+++..|...
T Consensus 336 e~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~ 376 (784)
T PRK10787 336 EYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999986246778779964699877246999999985898
No 486
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=74.47 E-value=5.4 Score=18.22 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHCCCEEEEECC-CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCC
Q ss_conf 967980999588-9986899999999999759994999916046569999999985588881599985897898887307
Q gi|255764515|r 15 LDHKRCAIWASM-GSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKT 93 (458)
Q Consensus 15 ~~~~~~ll~~~~-G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~ 93 (458)
.+++.++|.||| .+|-|+.. ++..|+..|.+++.+.|.-.+..+- .+.+.+......++-.+.+++.....+....
T Consensus 263 V~GK~~IIvDDmIdTggTl~~--aA~~Lk~~GA~~V~a~aTHgvfS~a-~e~~~~~~e~~~i~~vvvTNti~~~~~l~~~ 339 (381)
T PRK06827 263 VEGKDVFIVDDMIASGGSVLD--AAKELKSRGAKKIICAVSFPFFTEG-LEKFDKAYEEGYIYRIIGTNLVYHPEELKSK 339 (381)
T ss_pred CCCCEEEEECCCCCCCHHHHH--HHHHHHHCCCCEEEEEEECHHCCCH-HHHHHHHHHCCCCCEEEECCCCCCCHHHHCC
T ss_conf 679889997243145268999--9999998799889999973660476-9999764542886489977999899678158
Q ss_pred CCCEEE
Q ss_conf 798699
Q gi|255764515|r 94 PAVLYV 99 (458)
Q Consensus 94 ~~~i~i 99 (458)
.....+
T Consensus 340 ~ki~vl 345 (381)
T PRK06827 340 PWYTEA 345 (381)
T ss_pred CCEEEE
T ss_conf 983998
No 487
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=74.44 E-value=3 Score=19.71 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 0999588998689999999999
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l 41 (458)
.+|+.++++|||-.|+.++..+
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~ 27 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRL 27 (308)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998988757789999999982
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=74.40 E-value=5.4 Score=18.21 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999588998689999999999975999499991
Q gi|255764515|r 21 AIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA 53 (458)
Q Consensus 21 ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~ 53 (458)
+++.+.|+|||-.|-.+...+ +...+.+|+
T Consensus 3 gI~G~sgsGKTT~a~~L~~~l---~~~~v~~i~ 32 (198)
T cd02023 3 GIAGGSGSGKTTVAEEIIEQL---GNPKVVIIS 32 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHH---CCCCEEEEE
T ss_conf 988999885999999999980---999858997
No 489
>KOG1564 consensus
Probab=73.91 E-value=5.5 Score=18.14 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=0.0
Q ss_pred EEECCCCCHH--HHHHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCC
Q ss_conf 9958899868--999999999997599---94999916046569999999985588881599985897898887307798
Q gi|255764515|r 22 IWASMGSGKT--VSVLTALSYIHLWGE---KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAV 96 (458)
Q Consensus 22 l~~~~G~GKT--~~al~~~~~l~~~~~---~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~ 96 (458)
|+.+-|+||| +.-++++..+-.... +.++.||.-+-.+.+=-.++.+..+..+- ..++..-..+....
T Consensus 107 i~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~~rp~-------~~~~~~~~~Npgd~ 179 (351)
T KOG1564 107 ICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLPQRPN-------PEKELNYNDNPGDH 179 (351)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCC-------CCHHHHHCCCCCCE
T ss_conf 86025775889999999886085510897774399976888747789999985504799-------43443421697764
Q ss_pred EEEECCCCHHHHHHHCCCCCCC-------CEEECCC-CCCCCCCCCCCHH---HHHHHHHHHH
Q ss_conf 6998064202334420001132-------2044045-3100246543115---6777766543
Q gi|255764515|r 97 LYVINFENLGWLVQELKGTWPF-------ATIVVDE-STKLKSFRLRQGS---KTARALAKPA 148 (458)
Q Consensus 97 i~i~s~e~~~~~~~~~~~~~~~-------~~iIiDE-aH~lkn~~~~~~s---~~~~~l~~~~ 148 (458)
||+.+...+..+..-.....++ .+||+|- ||.+|..-....| ++.+.+.+++
T Consensus 180 IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~rla 242 (351)
T KOG1564 180 IFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLFRLA 242 (351)
T ss_pred EEEEECCCHHHHHHHHHHHCCCEECCCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 798733533568998866423101157300899712057778773257223256788999999
No 490
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=73.86 E-value=5.5 Score=18.13 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH-----------CCCCCEEEEE
Q ss_conf 798099958899868999999999997-----------5999499991
Q gi|255764515|r 17 HKRCAIWASMGSGKTVSVLTALSYIHL-----------WGEKSVLVIA 53 (458)
Q Consensus 17 ~~~~ll~~~~G~GKT~~al~~~~~l~~-----------~~~~~~LIv~ 53 (458)
.+..||...-|+|||.+-......+.. -....+|||+
T Consensus 16 ~G~~LVeASAGTGKT~~La~l~lRLll~~~~~~~~~~pl~id~ILvVT 63 (1181)
T PRK10876 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVT 63 (1181)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
T ss_conf 999798871536678999999999986244554567999828198965
No 491
>PRK07773 replicative DNA helicase; Validated
Probab=73.80 E-value=5.6 Score=18.12 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHC-----CC
Q ss_conf 0999588998689999999999975999499991604656999999998558888159998589789888730-----77
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLK-----TP 94 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~-----~~ 94 (458)
.++|.-+|.|||.-++.++...-.....++++..--=-.++--.+-+.-....+.-+...-.=+.....+... ..
T Consensus 206 ~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLEMs~~ql~~Rlls~~~~i~~~~lr~G~l~~~~~~~~~~a~~~l~~ 285 (868)
T PRK07773 206 IIVAARPGVGKSTLGLDFARSCSIRHRLASVIFSLEMSKEEIVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARRMSEISE 285 (868)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99982897777789999999999865996589730567889999999876078776641688898999999999999861
Q ss_pred CCEEE-----ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 98699-----8064202334420001132204404531002465431--------1567777665430598079965
Q gi|255764515|r 95 AVLYV-----INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQ--------GSKTARALAKPAWESERFIELT 158 (458)
Q Consensus 95 ~~i~i-----~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~--------~s~~~~~l~~~~~~~~~~l~LT 158 (458)
..++| +|...++...+.++....-++||+|--+-|....... -|+..|.+++--.-. +++||
T Consensus 286 ~pl~IdDtp~isi~eirakaRrlk~~~~l~lIvvDYLQLm~~~~~~~~R~qevs~isr~LK~lAkeL~vP--Vials 360 (868)
T PRK07773 286 APLFIDDSPNLTMMEIRSKARRLQQKANLKLIVVDYLQLMTSGKKYESRQQEVSEFSRHLKLLAKELEVP--VIALS 360 (868)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEE
T ss_conf 9888847999999999999999865269988999615524789887629899999989999999875897--89871
No 492
>PRK13764 ATPase; Provisional
Probab=73.59 E-value=5.2 Score=18.30 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6798099958899868999999999997599
Q gi|255764515|r 16 DHKRCAIWASMGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 16 ~~~~~ll~~~~G~GKT~~al~~~~~l~~~~~ 46 (458)
..++.|++..+|+|||--|-+++.++...|.
T Consensus 258 ~a~GilIaG~PGaGKsTfaqalA~~~~~~g~ 288 (605)
T PRK13764 258 RAEGILIAGAPGAGKSTFAQALAEFYADMGK 288 (605)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 3664999779999778999999999984797
No 493
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=73.50 E-value=5.7 Score=18.08 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=0.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 809995889986899999999999759994999
Q gi|255764515|r 19 RCAIWASMGSGKTVSVLTALSYIHLWGEKSVLV 51 (458)
Q Consensus 19 ~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LI 51 (458)
+.++-.-||+|||-..-.++..++..|++-+++
T Consensus 210 h~L~~GTtG~GKs~~lr~LL~~iR~rGd~AIiY 242 (613)
T TIGR02759 210 HILIHGTTGSGKSVALRKLLRWIRQRGDRAIIY 242 (613)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 526645417438999999999998639858998
No 494
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=73.46 E-value=5.3 Score=18.25 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98099958899868999999999997599
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGE 46 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~ 46 (458)
.+.|+|.++|.|||--|-++++.+...|+
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 64699569999746899999999986696
No 495
>PRK08506 replicative DNA helicase; Provisional
Probab=73.42 E-value=5.7 Score=18.07 Aligned_cols=138 Identities=20% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHC-----CC
Q ss_conf 0999588998689999999999975999499991604656999999998558888159998589789888730-----77
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLK-----TP 94 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~-----~~ 94 (458)
.+||.-||.|||.-|+.++... .....++++..--=--.+--.+-+...+..+..+...-.-+......... ..
T Consensus 196 iIIAARPsmGKTAfAlniA~~~-a~~~~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~lr~g~l~~~e~~~~~~a~~~l~~ 274 (473)
T PRK08506 196 IIIAARPSMGKTTLVLNMVLKA-LNQGKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWENLSDACDELSQ 274 (473)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9995079986789999999999-965996589822479999999999972887831000689999999999999999865
Q ss_pred CCEEE-----ECCCCHHHHHHHCCCCCC-CCEEECCCCCCCCCCCCCCH-----HHHHHHHHHHHHCCCE-EEEEC
Q ss_conf 98699-----806420233442000113-22044045310024654311-----5677776654305980-79965
Q gi|255764515|r 95 AVLYV-----INFENLGWLVQELKGTWP-FATIVVDESTKLKSFRLRQG-----SKTARALAKPAWESER-FIELT 158 (458)
Q Consensus 95 ~~i~i-----~s~e~~~~~~~~~~~~~~-~~~iIiDEaH~lkn~~~~~~-----s~~~~~l~~~~~~~~~-~l~LT 158 (458)
..++| .|...+....+.++...+ .++||||=-|-++....... +..++.+..++..-.- +++||
T Consensus 275 ~~l~IdD~~~lti~~Ira~~Rr~k~~~~~l~livIDYLQLm~~~~~~~~R~~ev~~ISr~LK~lAkEl~vPViaLS 350 (473)
T PRK08506 275 KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSKNFKDRHLQISEISRGLKLLARELDIPIIALS 350 (473)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9889988999999999999999999769987899636755468887530889999999999999999699799970
No 496
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.11 E-value=4.4 Score=18.76 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHHHC
Q ss_conf 98099958-8998689999999999975
Q gi|255764515|r 18 KRCAIWAS-MGSGKTVSVLTALSYIHLW 44 (458)
Q Consensus 18 ~~~ll~~~-~G~GKT~~al~~~~~l~~~ 44 (458)
+.|+.-.. ||+|||.+.-..+..|...
T Consensus 293 G~cLYISGVPGTGKTATV~eVIr~L~~~ 320 (650)
T PTZ00112 293 GQILYISGVPGTGKTATVYMVIKELQNK 320 (650)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 6569997899998003699999999999
No 497
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=73.07 E-value=1.5 Score=21.62 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEE--CCCCCHHHHHHH
Q ss_conf 99999679809995--889986899999
Q gi|255764515|r 11 VDWILDHKRCAIWA--SMGSGKTVSVLT 36 (458)
Q Consensus 11 v~~~~~~~~~ll~~--~~G~GKT~~al~ 36 (458)
|+.+++..++.+.. .+|+|||+++..
T Consensus 16 v~~~l~G~n~ti~aYGqTGSGKTyTm~G 43 (186)
T cd01363 16 LQSALDGYNVCIFAYGQTGSGKTYTMEG 43 (186)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEECC
T ss_conf 9999788746999967999987528235
No 498
>KOG1133 consensus
Probab=72.95 E-value=5.8 Score=18.00 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 874789999999996----7980999588998689999999
Q gi|255764515|r 2 NLAPHQTKIVDWILD----HKRCAIWASMGSGKTVSVLTAL 38 (458)
Q Consensus 2 ~L~p~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~ 38 (458)
+.|+-|.+-.+-+.. .+=+++-.++|+|||+..|.++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaa 55 (821)
T KOG1133 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAA 55 (821)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 82369999999999998537624675799888117899989
No 499
>KOG0987 consensus
Probab=72.75 E-value=5.9 Score=17.97 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCHHHHHHHH----HHHHCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 87478999999----99967980999-58899868999999999997599949999160465699999999855888815
Q gi|255764515|r 2 NLAPHQTKIVD----WILDHKRCAIW-ASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMN 76 (458)
Q Consensus 2 ~L~p~Q~~~v~----~~~~~~~~ll~-~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~ 76 (458)
+|-|-|....+ .+.++...+.. ..-|+|||+.--..+..+... ...++.|++.....
T Consensus 117 ~l~~eqk~v~d~~~~~v~~~~g~~ff~g~~gtgKt~l~~t~~~~~~~~-g~~~~~v~~s~ia~----------------- 178 (540)
T KOG0987 117 KLTPEQKRVYDAILEAVENNLGGVFFYGFGGTGKTYLLKTLIAALRSR-GKIVLNVASSGIAA----------------- 178 (540)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEHHHHHHHHHHC-CCCEEEEEECCHHH-----------------
T ss_conf 559877637999999985478765343678865402378899999745-87146653301244-----------------
Q ss_pred EEEEECCHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998589789888730779869980642023344200011322044045310024654311567777665
Q gi|255764515|r 77 ISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAK 146 (458)
Q Consensus 77 ~~~~~g~~~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~ 146 (458)
.....|..........-....+-.-..........+... +++|.||+-.+....-....+..+.+.+
T Consensus 179 ~~l~gg~T~~s~fgi~l~~~~~~~~~~k~~~~~~~l~~~---~~~i~dE~~m~~~~~fe~ld~~~r~i~~ 245 (540)
T KOG0987 179 LLLEGGRTAHSRFGIPLNPNETSTCPIKPKSDLAELIEE---KLIIWDEAPMVDRYCFEKLDRTLRDIRK 245 (540)
T ss_pred HHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCC---CCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 315688530043166567650200455667258874311---0124304310237788776789999862
No 500
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=72.69 E-value=1.9 Score=21.00 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEE--CCCCCHHHHHHH
Q ss_conf 99999999679809995--889986899999
Q gi|255764515|r 8 TKIVDWILDHKRCAIWA--SMGSGKTVSVLT 36 (458)
Q Consensus 8 ~~~v~~~~~~~~~ll~~--~~G~GKT~~al~ 36 (458)
...|+.+++..++.+.. .+|+|||+++++
T Consensus 68 ~plv~~~l~G~n~ti~aYGqTGSGKTyTm~G 98 (328)
T cd00106 68 KPLVESVLEGYNGTIFAYGQTGSGKTYTMFG 98 (328)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCEEECC
T ss_conf 9999999688866999968999985407457
Done!