HHsearch alignment for GI: 255764515 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=96.81 E-value=0.0089 Score=35.06 Aligned_cols=54 Identities=28% Similarity=0.340 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC-CC--CCEEEEECCHHH
Q ss_conf 747899999999967980999588998689999999999975-99--949999160465
Q gi|255764515|r 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLW-GE--KSVLVIAPLRVA 58 (458)
Q Consensus 3 L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~~-~~--~~~LIv~P~~l~ 58 (458)
T Consensus 1 Ln~~Q~~av~~--~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kA 57 (494)
T pfam00580 1 LNPEQRKAVTH--LGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKA 57 (494)
T ss_pred CCHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHH
T ss_conf 99889999809--9999799971870689999999999998189997478767028999