Query gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 341
No_of_seqs 2 out of 4
Neff 1.1
Searched_HMMs 23785
Date Wed Jun 1 01:52:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764516.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kha_A Beta-1,3-glucan-binding 23.6 33 0.0014 13.9 2.1 28 277-306 79-106 (130)
2 3b5n_B Protein SSO1; snare com 20.4 37 0.0016 13.6 1.7 43 92-134 4-46 (69)
3 3ie4_A GRAM-negative binding p 17.0 45 0.0019 13.0 1.9 28 276-305 68-95 (107)
4 1mg4_A Doublecortin, doublecor 16.7 46 0.0019 12.9 4.3 72 214-288 15-92 (113)
5 2gia_A Mitochondrial RNA-bindi 13.8 44 0.0018 13.1 0.7 13 248-260 101-113 (195)
6 1n7s_B Syntaxin 1A; neuronal s 13.7 55 0.0023 12.4 1.7 43 92-134 6-48 (68)
7 2c82_A 1-deoxy-D-xylulose 5-ph 12.9 41 0.0017 13.3 0.4 137 24-162 238-397 (413)
8 1uf0_A Serine/threonine-protei 12.8 59 0.0025 12.3 4.5 101 209-324 5-111 (116)
9 1gl2_B Syntaxin 7; membrane pr 12.8 59 0.0025 12.3 1.5 43 92-134 3-45 (65)
10 1op4_A Neural-cadherin; beta s 12.0 62 0.0026 12.1 1.6 48 46-93 72-119 (159)
No 1
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella} PDB: 2rqe_A
Probab=23.56 E-value=33 Score=13.88 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=22.1
Q ss_pred EECCEEEEEEECCCCCCEEEEECCCCEEEE
Q ss_conf 005625777504777761454034420145
Q gi|255764516|r 277 ITGDKIAYWAYPSENSSGYISASATQEHTM 306 (341)
Q Consensus 277 itgdkiaywaypsenssgyisasatqehtm 306 (341)
-.||+|-||.|-.-|.-||.... |+++.
T Consensus 79 k~gD~iyYW~~V~~ng~gY~~~~--q~~~V 106 (130)
T 2kha_A 79 KLGDKIYFWTYVIKDGLGYRQDN--GEWTV 106 (130)
T ss_dssp CTTCEEEEEEEEESSSCEEEEEE--EEEEC
T ss_pred CCCCEEEEEEEEEECCCCEECCC--CCEEE
T ss_conf 79999999999998996458168--86898
No 2
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.37 E-value=37 Score=13.56 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=36.5
Q ss_pred HHHEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
Q ss_conf 2111000233356443225323331100115653055531324
Q gi|255764516|r 92 EVQKKVNQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQIDLS 134 (341)
Q Consensus 92 evqkkvnqvnvltqkmntidgivndlaiqtedvgrkleqidls 134 (341)
+++.+.+.+.-+.+.|..+..+.+||+.-.+.-|..+.+|+-.
T Consensus 4 ~i~eR~~ei~~ie~~i~el~~lf~dla~LV~~Qge~id~Ie~n 46 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKN 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999989999999999999999835799999998
No 3
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=17.02 E-value=45 Score=12.99 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=21.5
Q ss_pred CEECCEEEEEEECCCCCCEEEEECCCCEEE
Q ss_conf 100562577750477776145403442014
Q gi|255764516|r 276 IITGDKIAYWAYPSENSSGYISASATQEHT 305 (341)
Q Consensus 276 iitgdkiaywaypsenssgyisasatqeht 305 (341)
+-.||.|-||.|-.-|..||.... |+++
T Consensus 68 lk~GD~lyYw~~V~~~g~gY~~~~--~~~~ 95 (107)
T 3ie4_A 68 LKPGDTLYYWTYVIYNGLGYREDD--GSFV 95 (107)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEE--EEEE
T ss_pred ECCCCEEEEEEEEEECCCEEEECC--EEEE
T ss_conf 379999999999999995189578--0399
No 4
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A
Probab=16.71 E-value=46 Score=12.94 Aligned_cols=72 Identities=19% Similarity=0.490 Sum_probs=41.4
Q ss_pred CCEEEEECCCEEEEEEEEEEEC-CCC----HHHHHHHHHHCHHHHHHHCCCEEEECC-CCCCCCCCCCCEECCEEEEEEE
Q ss_conf 0013443154058801578712-640----378899875067777652242001013-3200011123100562577750
Q gi|255764516|r 214 ENRIKFYDDKDVYINGQCFVKG-TDT----SIFDEIARQLTPRFLGLLQGRTMVRSA-NLREKASIGDIITGDKIAYWAY 287 (341)
Q Consensus 214 enrikfyddkdvyingqcfvkg-tdt----sifdeiarqltprflgllqgrtmvrsa-nlrekasigdiitgdkiayway 287 (341)
.-+|.||-.-|.+..|..++-- ... .+.++|.+.|.+++ ||..|-.-+-+. ..+.-.++.|+..|+. |-|.
T Consensus 15 ak~I~~~rNGD~~~~g~~~~v~~r~~~s~d~lL~~lt~~l~~~~-~l~~~VRklyT~~G~~~V~~l~dl~~g~~--YVa~ 91 (113)
T 1mg4_A 15 AKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNV-NLPQGVRTIYTIDGLKKISSLDQLVEGES--YVCG 91 (113)
T ss_dssp SEEEEEEETTCSSCCCEEEEECTTTCSSHHHHHHHHHHHHCCSS-SSTTCCCEEEETTSSCBCCSGGGCCTTCE--EEEE
T ss_pred CEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCCCEEEECCCCCEECCCHHHHCCCCE--EEEE
T ss_conf 50899996989899988999897545889999999999861046-99864259984899828087999677998--9998
Q ss_pred C
Q ss_conf 4
Q gi|255764516|r 288 P 288 (341)
Q Consensus 288 p 288 (341)
-
T Consensus 92 g 92 (113)
T 1mg4_A 92 S 92 (113)
T ss_dssp S
T ss_pred C
T ss_conf 1
No 5
>2gia_A Mitochondrial RNA-binding protein 2; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei TREU927} SCOP: d.18.1.4 PDB: 2gid_A 2gje_A
Probab=13.78 E-value=44 Score=13.09 Aligned_cols=13 Identities=54% Similarity=1.007 Sum_probs=11.0
Q ss_pred HCHHHHHHHCCCE
Q ss_conf 0677776522420
Q gi|255764516|r 248 LTPRFLGLLQGRT 260 (341)
Q Consensus 248 ltprflgllqgrt 260 (341)
.+.||||.|.||.
T Consensus 101 Y~ARFLgVLEgR~ 113 (195)
T 2gia_A 101 YTARFLAVLEGRS 113 (195)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999875213
No 6
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_B
Probab=13.70 E-value=55 Score=12.45 Aligned_cols=43 Identities=16% Similarity=0.428 Sum_probs=36.4
Q ss_pred HHHEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
Q ss_conf 2111000233356443225323331100115653055531324
Q gi|255764516|r 92 EVQKKVNQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQIDLS 134 (341)
Q Consensus 92 evqkkvnqvnvltqkmntidgivndlaiqtedvgrkleqidls 134 (341)
+++.+-..+.-+.+.|..+..+.+||+.-.++-|..+..|+-.
T Consensus 6 ~i~eR~~ei~~ie~~i~eL~~lf~dl~~lV~eQge~id~Ie~n 48 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 48 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999879999999999999999876799999999
No 7
>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A*
Probab=12.93 E-value=41 Score=13.26 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=69.0
Q ss_pred EEECCCHHHEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHCCH------HHHEHH
Q ss_conf 66318801312342478883100040123222433310021032233465515787267012332241------211100
Q gi|255764516|r 24 PWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIFEGEKQTFKDFNI------EVQKKV 97 (341)
Q Consensus 24 PW~vKDPSRIHAEV~Y~DG~~eELs~~~DFkvDVD~~~~iLsskrwiNN~~~lRIFEGEKQTFKd~Ni------evqkkv 97 (341)
---|..-|.||+-|.|.||-+--..-.-|.+.-. .+++--..|.-++.+.+...+-.+-+|.+.+- ..-+++
T Consensus 238 ~vvIHpqSiIHs~V~f~DGs~~a~~~~pDM~ipI--~~aL~~p~r~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~La~~a 315 (413)
T 2c82_A 238 DVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPI--SLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQA 315 (413)
T ss_dssp EEEECTTCCEEEEEEETTSCEEEEECSSCTHHHH--HHHHHTTSCCTTSSCCCCCSSCEEEEEBCCCTTTCTHHHHHHHH
T ss_pred EEEECCCCEEEEEEEECCCCEEEEECCCCCHHHH--HHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHCHHHHHHHHH
T ss_conf 6897476403578994699565313553114357--77534764343112331145555541268874447299999999
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHCCH----HH----HHHHHHH--------CCHHHHCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 023-335644322532333110011----56----5305553--------132431288767889999987421564479
Q gi|255764516|r 98 NQV-NVLTQKMNTIDGIVNDLAIQT----ED----VGRKLEQ--------IDLSKVEGLDPQTRKYLQDIQTQLTSDTLT 160 (341)
Q Consensus 98 nqv-nvltqkmntidgivndlaiqt----ed----vgrkleq--------idlskvegldpqtrkylqdiqtqltsdtlt 160 (341)
... ....--+|..+-+.-++-++- -| +.+-|+. -++..+--+|-.+|++.+.+--.+.+-+++
T Consensus 316 ~~~gg~~~ivlNAANEvAV~~FL~~kI~F~dI~~iI~~vL~~~~~~~~~p~slddIl~~D~~aR~~A~~~i~~~~~~~~~ 395 (413)
T 2c82_A 316 GVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVDDVLDAQRWARERAQRAVSGMASVAIA 395 (413)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCGGGGSCCSSHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHCCCHHEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 88499741673579799999999589986789999999998551458999999999999999999999999975667565
Q ss_pred EE
Q ss_conf 99
Q gi|255764516|r 161 LQ 162 (341)
Q Consensus 161 lq 162 (341)
-.
T Consensus 396 ~~ 397 (413)
T 2c82_A 396 ST 397 (413)
T ss_dssp --
T ss_pred HC
T ss_conf 21
No 8
>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} SCOP: d.15.11.1
Probab=12.79 E-value=59 Score=12.28 Aligned_cols=101 Identities=24% Similarity=0.479 Sum_probs=52.5
Q ss_pred CCCCCCCEEEEECCCEEEEEEEEEEECC-CCHHHH----HHHHHHCHHHHHHHCC-CEEEECCCCCCCCCCCCCEECCEE
Q ss_conf 6675000134431540588015787126-403788----9987506777765224-200101332000111231005625
Q gi|255764516|r 209 KSGSLENRIKFYDDKDVYINGQCFVKGT-DTSIFD----EIARQLTPRFLGLLQG-RTMVRSANLREKASIGDIITGDKI 282 (341)
Q Consensus 209 ksgslenrikfyddkdvyingqcfvkgt-dtsifd----eiarqltprflgllqg-rtmvrsanlrekasigdiitgdki 282 (341)
.++.---+|.||-.-|.+..|.+++--. ...-|| ++.+.|.+++ +|-.| |........++-.++-|+..|+.
T Consensus 5 ~~~~kak~I~~~rNGD~~~~g~~~~v~~r~~~s~d~lL~~lt~~l~~~v-~l~~~VRklyt~~G~~~V~~l~dl~~g~~- 82 (116)
T 1uf0_A 5 SSGKKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNV-NLPQGVRTIYTIDGLKKISSLDQLVEGES- 82 (116)
T ss_dssp CCCCSCEEEEEEETTCSSCCCEEEEECTTTCCSHHHHHHHHHHHSCCSS-SCSSCCCEEEESSSSCEECSTTSCCSSEE-
T ss_pred CCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCCCEEEECCCCCEECCCHHHHCCCCE-
T ss_conf 7787874899995999899989999897545899999999999860357-89876259981899808288999667998-
Q ss_pred EEEEECCCCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 777504777761454034420145531112102345311367
Q gi|255764516|r 283 AYWAYPSENSSGYISASATQEHTMAVSAENARKRWRIMGKTD 324 (341)
Q Consensus 283 aywaypsenssgyisasatqehtmavsaenarkrwrimgktd 324 (341)
|-|.-.|. -..+.. .++.+..|.+..++-
T Consensus 83 -yVa~g~E~-----------fk~~~Y-~~~~~~~w~~~~~~~ 111 (116)
T 1uf0_A 83 -YVCGSIEP-----------FKKLEY-TKNVNPNWSVNVKTS 111 (116)
T ss_dssp -EEEESSSC-----------CCCCCS-GGGTCSCSSSSCCCC
T ss_pred -EEEECCCC-----------CCCCCC-CCCCCCCCCCCCCCC
T ss_conf -99984887-----------723553-554577876566778
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=12.79 E-value=59 Score=12.28 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=34.0
Q ss_pred HHHEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
Q ss_conf 2111000233356443225323331100115653055531324
Q gi|255764516|r 92 EVQKKVNQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQIDLS 134 (341)
Q Consensus 92 evqkkvnqvnvltqkmntidgivndlaiqtedvgrkleqidls 134 (341)
+++.+...+.-+.+.|..+..+.+||+.-.++-|..+.+|+-.
T Consensus 3 ~i~eR~~ei~~ie~~i~el~~lf~dla~lV~eQge~id~Ie~n 45 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEAN 45 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 6889999999999979999999999999998721699999999
No 10
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=12.01 E-value=62 Score=12.13 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=0.0
Q ss_pred EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHCCHHH
Q ss_conf 004012322243331002103223346551578726701233224121
Q gi|255764516|r 46 ELSPERDFKVDVDESSLILSSKRWINNNNALRIFEGEKQTFKDFNIEV 93 (341)
Q Consensus 46 ELs~~~DFkvDVD~~~~iLsskrwiNN~~~lRIFEGEKQTFKd~Niev 93 (341)
|-|-..|||||-||.-....|-.........-|+.-.|.|-..+.+.|
T Consensus 72 essepadfkvdedgtvyavrsfpltaeqakfliyaqdketqekwqvav 119 (159)
T 1op4_A 72 ESSEPADFKVDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAV 119 (159)
T ss_dssp ECCCSSEEEEETTTEEEEESCCSCSSSCEEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCEECCCCCEEEEEECCCCHHHHEEEEEECCHHHHHHHHHHE
T ss_conf 347874410668875899962366353200578842513455552201
Done!