RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764516|ref|YP_003084344.1| hypothetical protein
CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)



>gnl|CDD|144408 pfam00798, Arena_glycoprot, Arenavirus glycoprotein. 
          Length = 473

 Score = 30.3 bits (69), Expect = 0.80
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 76  LRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVND 116
           LR+F+  K   K  N E +   N +N+LT    TI+ +++D
Sbjct: 301 LRLFDFNKNAIKTLNDETK---NALNLLT---KTINSLISD 335


>gnl|CDD|36362 KOG1147, KOG1147, KOG1147, Glutamyl-tRNA synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 712

 Score = 27.6 bits (61), Expect = 5.1
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 27  VKDPSRIHAEV-KYPDGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIFEGEKQT 85
           V    R+   +   P     E+SP+     ++ E  +I S K  +   +A  + EGE+ T
Sbjct: 513 VVKEDRVEVTITNGPQEEYIEVSPKHKKNPELGEKKVIYSKKILLEQADAEALKEGEEVT 572

Query: 86  FKDF-NIEVQKK 96
             ++ N  ++K 
Sbjct: 573 LMNWGNAIIKKI 584


>gnl|CDD|35737 KOG0517, KOG0517, KOG0517, Beta-spectrin [Cytoskeleton].
          Length = 2473

 Score = 27.6 bits (61), Expect = 5.6
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 93   VQKKVNQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQIDLSKVEGLDPQ---TRKYLQD 149
            V +K     ++ +K+  +    ++L   T++ GRKL Q   ++ E L       +K L +
Sbjct: 1336 VSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQA--NRQELLLQSLADAKKKLDE 1393

Query: 150  IQTQLTSD 157
            +++QL SD
Sbjct: 1394 LESQLQSD 1401


>gnl|CDD|144066 pfam00334, NDK, Nucleoside diphosphate kinase. 
          Length = 135

 Score = 27.4 bits (62), Expect = 6.4
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 306 MAVSAENARKRWR-IMGKTDS 325
           M +  ENA    R +MG T+ 
Sbjct: 72  MVLEGENAVAVVRELMGATNP 92


>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
           Kinase, Insulin Receptor.  Protein Tyrosine Kinase (PTK)
           family; Insulin Receptor (InsR); catalytic (c) domain.
           The PTKc family is part of a larger superfamily that
           includes the catalytic domains of other kinases such as
           protein serine/threonine kinases, RIO kinases, and
           phosphoinositide 3-kinase (PI3K). PTKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           tyrosine (tyr) residues in protein substrates. InsR is a
           receptor tyr kinase (RTK) that is composed of two
           alphabeta heterodimers. Binding of the insulin ligand to
           the extracellular alpha subunit activates the
           intracellular tyr kinase domain of the transmembrane
           beta subunit. Receptor activation leads to
           autophosphorylation, stimulating downstream kinase
           activities, which initiate signaling cascades and
           biological function. InsR signaling plays an important
           role in many cellular processes including glucose
           homeostasis, glycogen synthesis, lipid and protein
           metabolism, ion and amino acid transport, cell cycle and
           proliferation, cell differentiation, gene transcription,
           and nitric oxide synthesis. Insulin resistance, caused
           by abnormalities in InsR signaling, has been described
           in diabetes, hypertension, cardiovascular disease,
           metabolic syndrome, heart failure, and female
           infertility.
          Length = 288

 Score = 26.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 194 VVKGDI-TGLSIATKNKSGSLENRIKFYDDKDV 225
           ++KG+  T +++ T N+S SL  RI+F ++  V
Sbjct: 30  IIKGEAETRVAVKTVNESASLRERIEFLNEASV 62


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,931,247
Number of extensions: 196854
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 11
Length of query: 341
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 247
Effective length of database: 4,232,491
Effective search space: 1045425277
Effective search space used: 1045425277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)