RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764516|ref|YP_003084344.1| hypothetical protein
CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)



>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
          Length = 206

 Score = 33.5 bits (77), Expect = 0.074
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 13/73 (17%)

Query: 98  NQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTS- 156
           NQV  LT K+N ID   N    +T ++ +K+ Q D S + GL  +     Q ++ QL   
Sbjct: 100 NQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSD-SVINGLKEEN----QKLKNQLIVA 151

Query: 157 ----DTLTLQLDD 165
               D   LQLDD
Sbjct: 152 QKKVDAANLQLDD 164


>gnl|CDD|138537 PRK11354, kil, FtsZ inhibitor protein; Reviewed.
          Length = 73

 Score = 28.7 bits (64), Expect = 2.0
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 242 DEIARQ-LTPRFLGLLQGRTMVRSANLREK 270
           DEI RQ +TP    L +GRT + SAN  +K
Sbjct: 9   DEIPRQCVTPGDYVLHEGRTYIASANNIKK 38


>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase;
           Provisional.
          Length = 266

 Score = 28.8 bits (65), Expect = 2.1
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 79  FEGEKQTFKDFNIEVQKKVNQ-VNVLTQKMNTIDGIVNDLAI 119
            + E   F   ++   ++VN  V  + +K   IDG+VN+  I
Sbjct: 46  GQHENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGI 87


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 28.4 bits (64), Expect = 3.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 137 EGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDD 170
           +GLD  +R+ L ++   L    +TL L   R D+
Sbjct: 164 DGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197


>gnl|CDD|169699 PRK09186, PRK09186, flagellin modification protein A; Provisional.
          Length = 256

 Score = 27.6 bits (62), Expect = 4.4
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 56  DVDESSLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQ-VNVLTQKMNTIDGIV 114
           D+D+ +L       +        F+ +K +  + +I  Q+ + + ++   +K   IDG V
Sbjct: 35  DIDKEAL-NELLESLGKE-----FKSKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAV 88

Query: 115 NDLAIQTEDVGRKLEQIDLSKV 136
           N    + +D G+K   + L   
Sbjct: 89  NCAYPRNKDYGKKFFDVSLDDF 110


>gnl|CDD|164786 PHA00202, PHA00202, DNA replication initiation protein.
          Length = 388

 Score = 27.6 bits (61), Expect = 5.1
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 124 VGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRFKDK 183
           V    ++ID +  +  D   R YL+D     T+  L L L   R     GY+ S+     
Sbjct: 80  VCSTSDEID-AYNKAFDICYRNYLEDCLRIFTNQVLGLSLSPMRGRGLHGYNDSMVITSM 138

Query: 184 DG 185
            G
Sbjct: 139 TG 140


>gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed.
          Length = 394

 Score = 27.5 bits (62), Expect = 5.2
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 225 VYINGQCFVKGTDTSIFDEIARQLT 249
           VYIN  C +  T  +IF EIARQL 
Sbjct: 89  VYIN--CQIDRTRYAIFSEIARQLF 111


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 27.4 bits (61), Expect = 5.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 138 GLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGY 174
           GLDP+ RK L  +  +L    +T+ L    +DD   Y
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211


>gnl|CDD|114908 pfam06216, RTBV_P46, Rice tungro bacilliform virus P46 protein.
           This family consists of several Rice tungro bacilliform
           virus P46 proteins. The function of this family is
           unknown.
          Length = 392

 Score = 26.9 bits (59), Expect = 8.1
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 247 QLTPRFLGLLQGRTMVRSANLREKASIG-DIITGDKIAYWAYPSENSSGYISASATQEHT 305
            L+P F+G L     ++  N   K   G  +I  +KI  + +P  N             T
Sbjct: 232 ILSPGFIGDLYAHGFIKQINFTNKLPEGIPLIIAEKIMDYKFPGAN-------------T 278

Query: 306 MAVSAENARKRWRIMGKTDSYYITLYWLQEVINF 339
           + +  E  +  +  M +   +   +Y  +    F
Sbjct: 279 ILIEKEIPKWDFDEMKRETQFRTNIYIFKGHRCF 312


>gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter. 
          Length = 399

 Score = 26.9 bits (60), Expect = 8.1
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 279 GDKIAYWAYPSENSSGYISASAT 301
           G     WA  S+N+ G I+    
Sbjct: 327 GAGAIGWALISDNAPGNIAGLTG 349


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,401,303
Number of extensions: 335854
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 26
Length of query: 341
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 247
Effective length of database: 3,963,321
Effective search space: 978940287
Effective search space used: 978940287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)