RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62] (341 letters) >gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional. Length = 206 Score = 33.5 bits (77), Expect = 0.074 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 13/73 (17%) Query: 98 NQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTS- 156 NQV LT K+N ID N +T ++ +K+ Q D S + GL + Q ++ QL Sbjct: 100 NQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSD-SVINGLKEEN----QKLKNQLIVA 151 Query: 157 ----DTLTLQLDD 165 D LQLDD Sbjct: 152 QKKVDAANLQLDD 164 >gnl|CDD|138537 PRK11354, kil, FtsZ inhibitor protein; Reviewed. Length = 73 Score = 28.7 bits (64), Expect = 2.0 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Query: 242 DEIARQ-LTPRFLGLLQGRTMVRSANLREK 270 DEI RQ +TP L +GRT + SAN +K Sbjct: 9 DEIPRQCVTPGDYVLHEGRTYIASANNIKK 38 >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional. Length = 266 Score = 28.8 bits (65), Expect = 2.1 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Query: 79 FEGEKQTFKDFNIEVQKKVNQ-VNVLTQKMNTIDGIVNDLAI 119 + E F ++ ++VN V + +K IDG+VN+ I Sbjct: 46 GQHENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGI 87 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 28.4 bits (64), Expect = 3.0 Identities = 11/34 (32%), Positives = 18/34 (52%) Query: 137 EGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDD 170 +GLD +R+ L ++ L +TL L R D+ Sbjct: 164 DGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197 >gnl|CDD|169699 PRK09186, PRK09186, flagellin modification protein A; Provisional. Length = 256 Score = 27.6 bits (62), Expect = 4.4 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 56 DVDESSLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQ-VNVLTQKMNTIDGIV 114 D+D+ +L + F+ +K + + +I Q+ + + ++ +K IDG V Sbjct: 35 DIDKEAL-NELLESLGKE-----FKSKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAV 88 Query: 115 NDLAIQTEDVGRKLEQIDLSKV 136 N + +D G+K + L Sbjct: 89 NCAYPRNKDYGKKFFDVSLDDF 110 >gnl|CDD|164786 PHA00202, PHA00202, DNA replication initiation protein. Length = 388 Score = 27.6 bits (61), Expect = 5.1 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 124 VGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRFKDK 183 V ++ID + + D R YL+D T+ L L L R GY+ S+ Sbjct: 80 VCSTSDEID-AYNKAFDICYRNYLEDCLRIFTNQVLGLSLSPMRGRGLHGYNDSMVITSM 138 Query: 184 DG 185 G Sbjct: 139 TG 140 >gnl|CDD|179010 PRK00411, cdc6, cell division control protein 6; Reviewed. Length = 394 Score = 27.5 bits (62), Expect = 5.2 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Query: 225 VYINGQCFVKGTDTSIFDEIARQLT 249 VYIN C + T +IF EIARQL Sbjct: 89 VYIN--CQIDRTRYAIFSEIARQLF 111 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 27.4 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 19/37 (51%) Query: 138 GLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGY 174 GLDP+ RK L + +L +T+ L +DD Y Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211 >gnl|CDD|114908 pfam06216, RTBV_P46, Rice tungro bacilliform virus P46 protein. This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown. Length = 392 Score = 26.9 bits (59), Expect = 8.1 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 247 QLTPRFLGLLQGRTMVRSANLREKASIG-DIITGDKIAYWAYPSENSSGYISASATQEHT 305 L+P F+G L ++ N K G +I +KI + +P N T Sbjct: 232 ILSPGFIGDLYAHGFIKQINFTNKLPEGIPLIIAEKIMDYKFPGAN-------------T 278 Query: 306 MAVSAENARKRWRIMGKTDSYYITLYWLQEVINF 339 + + E + + M + + +Y + F Sbjct: 279 ILIEKEIPKWDFDEMKRETQFRTNIYIFKGHRCF 312 >gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter. Length = 399 Score = 26.9 bits (60), Expect = 8.1 Identities = 7/23 (30%), Positives = 10/23 (43%) Query: 279 GDKIAYWAYPSENSSGYISASAT 301 G WA S+N+ G I+ Sbjct: 327 GAGAIGWALISDNAPGNIAGLTG 349 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0688 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,401,303 Number of extensions: 335854 Number of successful extensions: 666 Number of sequences better than 10.0: 1 Number of HSP's gapped: 666 Number of HSP's successfully gapped: 26 Length of query: 341 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 247 Effective length of database: 3,963,321 Effective search space: 978940287 Effective search space used: 978940287 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 57 (25.8 bits)