RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764516|ref|YP_003084344.1| hypothetical protein
CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)



>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 29.7 bits (66), Expect = 0.48
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 86  FKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQTEDVGRKLEQI------DLSKVEGL 139
            KD   +  K   Q+ + T       G V DL  + +   R ++        ++   +GL
Sbjct: 224 IKDSVPKGAKIDAQIVIGT------PGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL 277

Query: 140 DPQTRKYLQ----DIQTQLTSDTLTLQLDD 165
             Q+ +       + Q  L S T + +++ 
Sbjct: 278 GDQSMRIKHLLPRNTQIVLFSATFSERVEK 307


>2hhp_A Poly(A) polymerase; template-independent RNA polymerase,
           transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae}
           (A:1-39,A:202-349)
          Length = 187

 Score = 28.7 bits (64), Expect = 1.2
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 247 QLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASATQEHTM 306
            L P   G LQ R        ++++    +IT       AYPS  ++  I+ S     T 
Sbjct: 111 ILKPIEDGPLQVRVWNPKIYAQDRSHRMPVIT------PAYPSMCATHNITES-----TK 159

Query: 307 AVSAENARKRWRIM 320
            V  +   +  +I 
Sbjct: 160 KVILQEFVRGVQIT 173


>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics,
           joint center for structural genomics, JCSG, protein
           structure initiative; 2.12A {Bacteroides fragilis nctc
           9343} (A:1-225,A:338-425)
          Length = 313

 Score = 27.1 bits (60), Expect = 3.7
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 212 SLENRIKFYDDKDVYINGQCFVKGTDTSIFDEIARQLTPRFLGLLQGRTMVRSANLR 268
           SL+     Y+  D       F        F E A     R+L + QG   V   N R
Sbjct: 240 SLQVXHHLYEXGDKVFGPYGFYDA-----FSETADWYPKRYLAIDQGPIAVXIENYR 291


>3i10_A Putative glycerophosphoryl diester phosphodiesterase;
           NP_812074.1, structural genomics; HET: MSE; 1.35A
           {Bacteroides thetaiotaomicron vpi-5482}
           (A:1-65,A:105-278)
          Length = 239

 Score = 26.9 bits (59), Expect = 4.2
 Identities = 2/37 (5%), Positives = 10/37 (27%)

Query: 22  VIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVD 58
           +   T+      + +      + E+       ++   
Sbjct: 182 IWYNTLWGSLAGNHDDNLALTDPEKSYGYLIEQLGAR 218


>1kaf_A Transcription regulatory protein MOTA; escherichia coli,
          X-RAY crystallography, protein-DNA interactions,
          structural genomics; 1.60A {Enterobacteria phage T4}
          (A:)
          Length = 108

 Score = 26.4 bits (58), Expect = 5.6
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 70 INNNNALRIF-----EGEKQTFKDFNIEVQKKVN 98
          INNN  +RIF     E   Q F D  +  +   N
Sbjct: 51 INNNGNMRIFGYKMMEHHIQKFTDIGMSCKIAKN 84


>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM;
           2.30A {Candida albicans} (A:)
          Length = 392

 Score = 25.5 bits (56), Expect = 9.5
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 17  FGSYFVIPWTVKDPSRIHAEVK--YPDGNMEELSPERDFKVDVDE---SSLILSSKRWIN 71
           + SY+++P+TV D +  H E+   Y      +   + ++K  ++E    +LI S K  ++
Sbjct: 272 YFSYYLLPFTVLD-NAQHDELGIAYLFYYASDSFEKPNYKKRLNELITDALITSKKFGVD 330

Query: 72  NNNALRIFEGEK 83
             N L   +   
Sbjct: 331 VFNCLTCQDNTY 342


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,514,501
Number of extensions: 109746
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 17
Length of query: 341
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 252
Effective length of database: 1,947,404
Effective search space: 490745808
Effective search space used: 490745808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)