BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764516|ref|YP_003084344.1| hypothetical protein
CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
           MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES
Sbjct: 1   MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60

Query: 61  SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ 120
           SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ
Sbjct: 61  SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ 120

Query: 121 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF 180
           TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF
Sbjct: 121 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF 180

Query: 181 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240
           KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI
Sbjct: 181 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240

Query: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300
           FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA
Sbjct: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300

Query: 301 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD 341
           TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD
Sbjct: 301 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD 341


>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 96.3 bits (238), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)

Query: 1   MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
           M + NFEQ+K V+Y   GS FVIPW +KDPSRIHAEV Y DG ++EL+  +DF VD   +
Sbjct: 7   MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66

Query: 61  SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
            L ++++      + +RIFEGEKQTFK++N +  +      K   +  L  +++ ++ IV
Sbjct: 67  LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122

Query: 115 NDL 117
           +DL
Sbjct: 123 SDL 125


>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 392

 Score = 26.6 bits (57), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 106 KMNTIDGIVNDLAIQTEDVGRKLEQIDL--SKVEGLDPQTRKYLQDIQTQLTSDTLTLQL 163
           ++ T +G  +   + T   G KL+ ++    K+EG D      LQ ++ Q+++DT  + +
Sbjct: 123 RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI 182

Query: 164 D 164
           +
Sbjct: 183 E 183


>gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 66

 Score = 25.8 bits (55), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 40 PDGNMEELSPERDFKVDVDESSLILSSKRW 69
          PD  +++L  E  F+ D ++S L+L S  W
Sbjct: 5  PDDGIDDLFEEDLFQYDANKSELVLISSLW 34


>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 837

 Score = 24.6 bits (52), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 112 GIVNDLAIQTEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDD 165
           G + DL  +    G  L + +   +  +DP ++K+LQ+I   + S T+ +   D
Sbjct: 30  GHIRDLPAKK---GSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATD 80


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score = 24.3 bits (51), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 227 INGQCFVKGTDTSIFDEI 244
           I  Q F+ GTD S+FD +
Sbjct: 341 IGSQIFMTGTDKSVFDSL 358


>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 500

 Score = 23.9 bits (50), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 41  DGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIF 79
           DGNMEE S   D  V V        ++  + N N++R  
Sbjct: 208 DGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFL 246


>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 423

 Score = 23.5 bits (49), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 131 IDLSKVEGLDPQTRKYLQDIQTQLTSDT 158
           IDLS + G  P  R    DI+T +++ T
Sbjct: 135 IDLSSLSGSGPHGRIVKSDIETLISTKT 162


>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 23.1 bits (48), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 18/135 (13%)

Query: 183 KDGALGGSITRVVKGDITGLSI--ATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240
           K+G+LG S+  +      G+       + + S +++I F D      NG    +G     
Sbjct: 20  KEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGN----NGILLYRGYPIEQ 75

Query: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300
             E +  L   +L LL G      AN+ ++    D     KI+  A  +EN S +     
Sbjct: 76  LSEKSDFLEVCYL-LLHGEL----ANVSQQKDFND-----KISRHALLNENMSRFFMGFP 125

Query: 301 TQEHTMA--VSAENA 313
           +  H MA  VSA  A
Sbjct: 126 SSAHPMAMLVSAVGA 140


>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 424

 Score = 23.1 bits (48), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 230 QCFVKGTDTSIFDEIARQLTPRFLGLLQGRTMVRSANLREKASIGD 275
           +CF +   T I +E        F  L  G+T +     R+   I D
Sbjct: 168 RCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHD 213


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score = 22.7 bits (47), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 57  VDESSLILSSKRWINNNN 74
           V +   I+ SK W NNNN
Sbjct: 185 VKDKKSIIPSKTWTNNNN 202


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,326
Number of Sequences: 1233
Number of extensions: 8493
Number of successful extensions: 38
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 18
length of query: 341
length of database: 328,796
effective HSP length: 75
effective length of query: 266
effective length of database: 236,321
effective search space: 62861386
effective search space used: 62861386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)