BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62] (341 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60 Query: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ 120 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ 120 Query: 121 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF 180 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF Sbjct: 121 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF 180 Query: 181 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI Sbjct: 181 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240 Query: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA Sbjct: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300 Query: 301 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD 341 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD Sbjct: 301 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD 341 >gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62] Length = 135 Score = 96.3 bits (238), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%) Query: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60 M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD + Sbjct: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66 Query: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114 L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV Sbjct: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122 Query: 115 NDL 117 +DL Sbjct: 123 SDL 125 >gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 392 Score = 26.6 bits (57), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 106 KMNTIDGIVNDLAIQTEDVGRKLEQIDL--SKVEGLDPQTRKYLQDIQTQLTSDTLTLQL 163 ++ T +G + + T G KL+ ++ K+EG D LQ ++ Q+++DT + + Sbjct: 123 RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI 182 Query: 164 D 164 + Sbjct: 183 E 183 >gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter asiaticus str. psy62] Length = 66 Score = 25.8 bits (55), Expect = 1.2, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 40 PDGNMEELSPERDFKVDVDESSLILSSKRW 69 PD +++L E F+ D ++S L+L S W Sbjct: 5 PDDGIDDLFEEDLFQYDANKSELVLISSLW 34 >gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 837 Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 112 GIVNDLAIQTEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDD 165 G + DL + G L + + + +DP ++K+LQ+I + S T+ + D Sbjct: 30 GHIRDLPAKK---GSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATD 80 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 12/18 (66%) Query: 227 INGQCFVKGTDTSIFDEI 244 I Q F+ GTD S+FD + Sbjct: 341 IGSQIFMTGTDKSVFDSL 358 >gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 500 Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 18/39 (46%) Query: 41 DGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIF 79 DGNMEE S D V V ++ + N N++R Sbjct: 208 DGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFL 246 >gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 131 IDLSKVEGLDPQTRKYLQDIQTQLTSDT 158 IDLS + G P R DI+T +++ T Sbjct: 135 IDLSSLSGSGPHGRIVKSDIETLISTKT 162 >gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 18/135 (13%) Query: 183 KDGALGGSITRVVKGDITGLSI--ATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240 K+G+LG S+ + G+ + + S +++I F D NG +G Sbjct: 20 KEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGN----NGILLYRGYPIEQ 75 Query: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300 E + L +L LL G AN+ ++ D KI+ A +EN S + Sbjct: 76 LSEKSDFLEVCYL-LLHGEL----ANVSQQKDFND-----KISRHALLNENMSRFFMGFP 125 Query: 301 TQEHTMA--VSAENA 313 + H MA VSA A Sbjct: 126 SSAHPMAMLVSAVGA 140 >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 23.1 bits (48), Expect = 7.2, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 18/46 (39%) Query: 230 QCFVKGTDTSIFDEIARQLTPRFLGLLQGRTMVRSANLREKASIGD 275 +CF + T I +E F L G+T + R+ I D Sbjct: 168 RCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHD 213 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 57 VDESSLILSSKRWINNNN 74 V + I+ SK W NNNN Sbjct: 185 VKDKKSIIPSKTWTNNNN 202 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.133 0.379 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 212,326 Number of Sequences: 1233 Number of extensions: 8493 Number of successful extensions: 38 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 18 length of query: 341 length of database: 328,796 effective HSP length: 75 effective length of query: 266 effective length of database: 236,321 effective search space: 62861386 effective search space used: 62861386 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)