Query gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 2 out of 4
Neff 1.3
Searched_HMMs 23785
Date Wed Jun 1 01:49:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764517.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0d_C TNF receptor-associated 50.2 7.4 0.00031 19.1 2.2 28 102-129 2-29 (65)
2 3m0a_A TNF receptor-associated 21.3 41 0.0017 14.7 2.1 24 106-129 5-28 (66)
3 2a2j_A Pyridoxamine 5'-phospha 17.1 39 0.0016 14.8 1.2 21 35-55 224-244 (246)
4 3ci9_A Heat shock factor-bindi 15.0 63 0.0026 13.6 2.2 28 108-135 15-43 (48)
5 2pie_A E3 ubiquitin-protein li 13.7 43 0.0018 14.6 0.7 27 23-49 32-65 (138)
6 2csw_A Ubiquitin ligase protei 12.1 66 0.0028 13.5 1.2 21 30-50 47-74 (145)
7 2wzl_A Phosphoprotein; viral p 9.6 68 0.0029 13.4 0.6 20 75-94 222-241 (303)
8 3bbo_X Ribosomal protein L27; 8.6 61 0.0025 13.7 0.0 37 72-108 153-189 (198)
9 1lfd_A Ralgds; RAL, effector i 8.2 1.1E+02 0.0045 12.2 1.5 17 7-23 37-53 (87)
10 3hx1_A SLR1951 protein; P74513 8.1 79 0.0033 13.0 0.4 50 37-88 50-110 (131)
No 1
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=50.20 E-value=7.4 Score=19.14 Aligned_cols=28 Identities=36% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1011000114644213778997567678
Q gi|255764517|r 102 LVKEADLYPLHNRLDGVETIVSDLNNMK 129 (135)
Q Consensus 102 lvK~~~~~~L~~r~~~v~~IV~DLnnmk 129 (135)
++|+--+..|..|..+.|+||+-||+--
T Consensus 2 ~~~~k~i~~Le~Kv~t~E~IV~VLNrEV 29 (65)
T 3m0d_C 2 FMKEKLLAELEGKLRVFENIVAVLNKEV 29 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4178899999999999999999999999
No 2
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=21.29 E-value=41 Score=14.67 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000114644213778997567678
Q gi|255764517|r 106 ADLYPLHNRLDGVETIVSDLNNMK 129 (135)
Q Consensus 106 ~~~~~L~~r~~~v~~IV~DLnnmk 129 (135)
+.+..|..|..+.|+||.-||+--
T Consensus 5 ~k~~~Le~Kv~t~E~IV~VLNrEV 28 (66)
T 3m0a_A 5 QRCESLEKKTATFENIVCVLNREV 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 3
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1
Probab=17.09 E-value=39 Score=14.82 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=11.4
Q ss_pred CHHHEEEECCCCCCCEEEECC
Q ss_conf 911311231578883100050
Q gi|255764517|r 35 DPSRIHAEVGYSDGRVQELAI 55 (135)
Q Consensus 35 DPSRIHAEV~Y~DG~~~ELa~ 55 (135)
.++|+|--+.|..+..+-|+|
T Consensus 224 ~~~RlHdRlry~~w~~eRL~P 244 (246)
T 2a2j_A 224 RENRMHNRIRVANGRLERLQP 244 (246)
T ss_dssp CTTSCCEEEEEETTEEEECCT
T ss_pred CCCCCEEEEEECCCCEEEECC
T ss_conf 998767379954984899589
No 4
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=15.01 E-value=63 Score=13.60 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHCC
Q ss_conf 01146442137-78997567678776319
Q gi|255764517|r 108 LYPLHNRLDGV-ETIVSDLNNMKNRIQDL 135 (135)
Q Consensus 108 ~~~L~~r~~~v-~~IV~DLnnmknriqdl 135 (135)
|.-+..|..++ +.|+.-+..|-.||.||
T Consensus 15 L~QmQ~kFq~mSd~Ii~riDdM~~rIDdL 43 (48)
T 3ci9_A 15 LQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988999999999988368889
No 5
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=13.68 E-value=43 Score=14.55 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=16.8
Q ss_pred EECEEEEEEECCCH------HHEEEECCCC-CCC
Q ss_conf 60367887631891------1311231578-883
Q gi|255764517|r 23 VGSKFVIPWDIKDP------SRIHAEVGYS-DGR 49 (135)
Q Consensus 23 ~GS~FVIPW~iKDP------SRIHAEV~Y~-DG~ 49 (135)
+|.-.-..+.+.+| ||.||++.+. +|.
T Consensus 32 iGR~~~~~i~l~~~~~~~~VSR~Ha~i~~~~~g~ 65 (138)
T 2pie_A 32 VGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQ 65 (138)
T ss_dssp EESSSSSSEECCCSSCTTSSCSSCEEEEECTTSC
T ss_pred EECCCCCCEEECCCCCCCCCCCHHEEEEECCCCE
T ss_conf 8348999869779875667310315999889998
No 6
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=12.11 E-value=66 Score=13.48 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.5
Q ss_pred EEECCCH------HHEEEECCCC-CCCE
Q ss_conf 7631891------1311231578-8831
Q gi|255764517|r 30 PWDIKDP------SRIHAEVGYS-DGRV 50 (135)
Q Consensus 30 PW~iKDP------SRIHAEV~Y~-DG~~ 50 (135)
.+.+.|| ||.||++.+. ||..
T Consensus 47 ~i~L~~~~~~~~VSR~Ha~i~~~~~g~~ 74 (145)
T 2csw_A 47 TYQLVSKICPLMISRNHCVLKQNPEGQW 74 (145)
T ss_dssp SEECCCSSCGGGSCTTCEEEEECTTSCE
T ss_pred CEEECCCCCCCCCCHHHEEEEECCCCEE
T ss_conf 8797688756737447959998999979
No 7
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone, nucleoprotein, RNA replication; 2.10A {Mokola virus}
Probab=9.59 E-value=68 Score=13.37 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=12.5
Q ss_pred CCEEEEEECCHHHHHHHCCC
Q ss_conf 87888963572345541344
Q gi|255764517|r 75 GDFIRIFEGEKQTFKEYNSD 94 (135)
Q Consensus 75 ~~~iRIFEGEKQTFK~~N~~ 94 (135)
|-||--||--|-..-|.--+
T Consensus 222 GIFL~NFEQLKMNLDDIVk~ 241 (303)
T 2wzl_A 222 GIFLWNFEQLKMNLDDIVKA 241 (303)
T ss_dssp SEEEECGGGGCCCHHHHHHH
T ss_pred CEEEECHHHHCCCHHHHHHH
T ss_conf 44553488753568999998
No 8
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=8.60 E-value=61 Score=13.69 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 2778788896357234554134441111111011000
Q gi|255764517|r 72 NREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADL 108 (135)
Q Consensus 72 ~r~~~~iRIFEGEKQTFK~~N~~~~raphnlvK~~~~ 108 (135)
-+++..+++.||+..--.|+-.|....||.+..+..+
T Consensus 153 ipK~k~i~V~egd~v~kgE~l~dG~p~PhdIL~i~gv 189 (198)
T 3bbo_X 153 ARKRENFRLQREKKKARRENYSYTLPTPELVLASASV 189 (198)
T ss_dssp -------------------------------------
T ss_pred CCCCCCEECCCCCEEECCEEECCCCCCHHHHHHHHHH
T ss_conf 1425503026776243030312479988897665300
No 9
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=8.19 E-value=1.1e+02 Score=12.22 Aligned_cols=17 Identities=24% Similarity=0.439 Sum_probs=8.9
Q ss_pred HHHCCCCCCCCEEEEEE
Q ss_conf 23205100243468886
Q gi|255764517|r 7 MEKLNFEQTKSVTYWAV 23 (135)
Q Consensus 7 M~~~NFEQtK~VtY~~~ 23 (135)
|+|.|.+.-..-.|.++
T Consensus 37 l~Kh~l~~d~~~~Y~L~ 53 (87)
T 1lfd_A 37 MDKHNLDEDEPEDYELL 53 (87)
T ss_dssp HHHTTCCSSCGGGEEEE
T ss_pred HHHHCCCCCCCCCEEEE
T ss_conf 99838887880221899
No 10
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, SGR167A, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=8.13 E-value=79 Score=13.00 Aligned_cols=50 Identities=36% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHEEEECCC-CCCCEEEECCCCCCCCCCCCEE--EEEECCC--------CCEEEEEECCHHHH
Q ss_conf 131123157-8883100050023322121027--9985277--------87888963572345
Q gi|255764517|r 37 SRIHAEVGY-SDGRVQELAISQDFDVDGLNAL--LTVNNRE--------GDFIRIFEGEKQTF 88 (135)
Q Consensus 37 SRIHAEV~Y-~DG~~~ELa~~~DF~VD~~~a~--L~~~~r~--------~~~iRIFEGEKQTF 88 (135)
||.||++-+ .++..+..-.-.|..+..+.|. ..||.++ ||-|+| |+..+|
T Consensus 50 Sr~Ha~I~~~~~~~~~~~~~i~D~~~~dl~S~NGt~vNg~~i~~~~L~~GD~I~i--G~~~~~ 110 (131)
T 3hx1_A 50 SRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKKVQEHIIQTGDEIVM--GPQVSV 110 (131)
T ss_dssp CTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETTEEESEEECCTTCEEEC--STTCEE
T ss_pred CHHHEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCEECCCEECCCCCEEEE--CCCEEE
T ss_conf 9344199996777776408994551057886353059999986178999999998--996899
Done!