Query         gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs    2 out of 4
Neff          1.3 
Searched_HMMs 13730
Date          Wed Jun  1 11:40:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764517.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wjna_ d.15.1.1 (A:) Tubulin-  18.1      30  0.0022   14.1   2.3   43   54-96     41-84  (97)
  2 d2a2ja1 b.45.1.1 (A:24-224) Py  16.9      23  0.0017   14.8   1.2   21   35-55    181-201 (201)
  3 d1n4ka2 b.42.6.1 (A:236-435) I  15.2      30  0.0022   14.1   1.4   23   75-97    127-149 (200)
  4 d1kafa_ d.199.1.1 (A:) DNA-bin  14.6      31  0.0023   14.0   1.4   27   73-99     52-83  (108)
  5 d2piea1 b.26.1.2 (A:13-139) Ub  12.4      37  0.0027   13.6   1.2   58   23-80     28-96  (127)
  6 d2o62a1 b.60.1.9 (A:133-269) U   9.4      55   0.004   12.5   2.2   51   18-70     79-131 (137)
  7 d1vyia_ d.293.1.1 (A:) Phospho   9.0      43  0.0032   13.1   0.6   23   75-97     36-58  (111)
  8 d1g6ga_ b.26.1.2 (A:) Phosphot   8.9      45  0.0033   13.0   0.7   31   19-49     36-69  (127)
  9 d1q0qa3 d.81.1.3 (A:126-274) 1   8.8      57  0.0042   12.4   1.2   32   20-51    111-143 (149)
 10 d1ef5a_ d.15.1.5 (A:) Rgl {Mou   8.7      53  0.0039   12.6   0.9   25    6-30     36-65  (88)

No 1  
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.11  E-value=30  Score=14.06  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCEEEE-EECCHHHHHHHCCCCC
Q ss_conf             500233221210279985277878889-6357234554134441
Q gi|255764517|r   54 AISQDFDVDGLNALLTVNNREGDFIRI-FEGEKQTFKEYNSDSP   96 (135)
Q Consensus        54 a~~~DF~VD~~~a~L~~~~r~~~~iRI-FEGEKQTFK~~N~~~~   96 (135)
                      -+++-|.+....--|....++....+| ++.+-+|+.+|+++.-
T Consensus        41 ~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg   84 (97)
T d1wjna_          41 LLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG   84 (97)
T ss_dssp             HHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred             HHHHHHCCCHHHEEEEECCCCCCCCCCEECCCCCCHHHCCCCCC
T ss_conf             99998796968939996387777411100678767745058999


No 2  
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.90  E-value=23  Score=14.77  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=10.7

Q ss_pred             CHHHEEEECCCCCCCEEEECC
Q ss_conf             911311231578883100050
Q gi|255764517|r   35 DPSRIHAEVGYSDGRVQELAI   55 (135)
Q Consensus        35 DPSRIHAEV~Y~DG~~~ELa~   55 (135)
                      .++|+|--+.|..+..+-|+|
T Consensus       181 ~~~RlHdR~~y~~w~~~rL~P  201 (201)
T d2a2ja1         181 RENRMHNRIRVANGRLERLQP  201 (201)
T ss_dssp             CTTSCCEEEEEETTEEEECCT
T ss_pred             CCCCCEEEEEECCCCEEECCC
T ss_conf             998867379975983897188


No 3  
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.21  E-value=30  Score=14.11  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=13.8

Q ss_pred             CCEEEEEECCHHHHHHHCCCCCC
Q ss_conf             87888963572345541344411
Q gi|255764517|r   75 GDFIRIFEGEKQTFKEYNSDSPR   97 (135)
Q Consensus        75 ~~~iRIFEGEKQTFK~~N~~~~r   97 (135)
                      .+.--||+.+.-|++.=++.+|+
T Consensus       127 ~d~~siF~l~ptt~~~~d~~V~~  149 (200)
T d1n4ka2         127 NDISSIFELDPTTLRGGDSLVPR  149 (200)
T ss_dssp             CSGGGCEEEEC------------
T ss_pred             CCCHHEEEECCCCCCCCCEECCC
T ss_conf             98134575045300047504366


No 4  
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=14.57  E-value=31  Score=13.99  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=21.6

Q ss_pred             CCCCEEEEE-----ECCHHHHHHHCCCCCCCC
Q ss_conf             778788896-----357234554134441111
Q gi|255764517|r   73 REGDFIRIF-----EGEKQTFKEYNSDSPRAP   99 (135)
Q Consensus        73 r~~~~iRIF-----EGEKQTFK~~N~~~~rap   99 (135)
                      +++...|||     |-++|.|+..+.|+.-+|
T Consensus        52 ~n~G~~RIfgYkm~e~~~q~Ft~lg~~vKi~~   83 (108)
T d1kafa_          52 NNNGNMRIFGYKMMEHHIQKFTDIGMSCKIAK   83 (108)
T ss_dssp             CTTSEEEEEEESCCHHHHHHHHTTTCEEEECT
T ss_pred             ECCCCEEEEEEECCHHHHHHHHHCCCEEEECC
T ss_conf             24881899865135989998864485389726


No 5  
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.38  E-value=37  Score=13.56  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             EECEEEEEEECCCH------HHEEEECCC-CCCCE--EEECCCCCCCCCCCC--EEEEEECCCCCEEEE
Q ss_conf             60367887631891------131123157-88831--000500233221210--279985277878889
Q gi|255764517|r   23 VGSKFVIPWDIKDP------SRIHAEVGY-SDGRV--QELAISQDFDVDGLN--ALLTVNNREGDFIRI   80 (135)
Q Consensus        23 ~GS~FVIPW~iKDP------SRIHAEV~Y-~DG~~--~ELa~~~DF~VD~~~--a~L~~~~r~~~~iRI   80 (135)
                      +|.-.--.+.+.+|      ||.||.+.+ ++|.+  +.+.-..---|++..  ..-...-+.||-|+|
T Consensus        28 iGR~~~~~~~l~~~~~~~~VSR~Ha~i~~~~~g~~~l~D~~S~NGt~lNg~~l~~~~~~~L~~GD~I~i   96 (127)
T d2piea1          28 VGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQL   96 (127)
T ss_dssp             EESSSSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred             ECCCCCCCEEECCCCCCCCCCHHHEEEEECCCCEEEEEECCCCCCEEECCEECCCCCEEECCCCCEEEE
T ss_conf             536787658978997566166236189997998599998777377279999946993069479999995


No 6  
>d2o62a1 b.60.1.9 (A:133-269) Uncharacterized protein All1756 ortholog {Nostoc punctiforme [TaxId: 272131]}
Probab=9.37  E-value=55  Score=12.52  Aligned_cols=51  Identities=18%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             EEEEEEECEEEEEEECCCHHHEEEECCC--CCCCEEEECCCCCCCCCCCCEEEEE
Q ss_conf             4688860367887631891131123157--8883100050023322121027998
Q gi|255764517|r   18 VTYWAVGSKFVIPWDIKDPSRIHAEVGY--SDGRVQELAISQDFDVDGLNALLTV   70 (135)
Q Consensus        18 VtY~~~GS~FVIPW~iKDPSRIHAEV~Y--~DG~~~ELa~~~DF~VD~~~a~L~~   70 (135)
                      +.+---|+++--|..|.--+.-++|++.  ..++-+-|  -|-||..|.=.++++
T Consensus        79 ~~~lPdG~~s~gp~qv~~~~~F~~E~gwL~~~~rR~RL--Vr~yd~~G~~~s~tl  131 (137)
T d2o62a1          79 VLLLPDGASATSPLKVQLRQPLFLEAGWLIQSDLRQRM--IRSYNDKGEWVSLTL  131 (137)
T ss_dssp             EEECGGGEEEEEESSCCTTSCEEEEEEEEEETTEEEEE--EEEECTTSBEEEEEE
T ss_pred             EEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHH--HHEECCCCCEEEEEE
T ss_conf             89958987533863115688746999942072665435--412288885878899


No 7  
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=8.97  E-value=43  Score=13.13  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=13.8

Q ss_pred             CCEEEEEECCHHHHHHHCCCCCC
Q ss_conf             87888963572345541344411
Q gi|255764517|r   75 GDFIRIFEGEKQTFKEYNSDSPR   97 (135)
Q Consensus        75 ~~~iRIFEGEKQTFK~~N~~~~r   97 (135)
                      |-|+--||--|-...|.--++..
T Consensus        36 GIFL~NFEQLKmNLDdIVk~ak~   58 (111)
T d1vyia_          36 GIFLYNFEQLKMNLDDIVKEAKN   58 (111)
T ss_dssp             CEEEECGGGGCCCHHHHHHHHTT
T ss_pred             CEEEECHHHHHCCHHHHHHHHCC
T ss_conf             46776189874568999998616


No 8  
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.87  E-value=45  Score=13.02  Aligned_cols=31  Identities=13%  Similarity=0.280  Sum_probs=18.1

Q ss_pred             EEEEEECEEEEEEECC---CHHHEEEECCCCCCC
Q ss_conf             6888603678876318---911311231578883
Q gi|255764517|r   19 TYWAVGSKFVIPWDIK---DPSRIHAEVGYSDGR   49 (135)
Q Consensus        19 tY~~~GS~FVIPW~iK---DPSRIHAEV~Y~DG~   49 (135)
                      ..|.+|..--.-|.+.   .-||.||++-+.++.
T Consensus        36 ~~~~iGR~~~~d~~l~d~~~VSr~Ha~i~~~~~~   69 (127)
T d1g6ga_          36 KVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG   69 (127)
T ss_dssp             EEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS
T ss_pred             CCEEECCCCCCCCCCCCCCHHHHHHHHEEECCCE
T ss_conf             3389736844671689951450999870301647


No 9  
>d1q0qa3 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=8.76  E-value=57  Score=12.41  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=19.6

Q ss_pred             EEEEECEE-EEEEECCCHHHEEEECCCCCCCEE
Q ss_conf             88860367-887631891131123157888310
Q gi|255764517|r   20 YWAVGSKF-VIPWDIKDPSRIHAEVGYSDGRVQ   51 (135)
Q Consensus        20 Y~~~GS~F-VIPW~iKDPSRIHAEV~Y~DG~~~   51 (135)
                      +|+|+-.+ -|---|.--|-||+-|.|.||.+-
T Consensus       111 ~~LF~l~~~kI~v~IHpqSiiHs~V~f~DGs~~  143 (149)
T d1q0qa3         111 RWLFNASASQMEVLIHPQSVIHSMVRYQDGSVL  143 (149)
T ss_dssp             HHHHTCCGGGEEEEECTTCCEEEEEEETTSCEE
T ss_pred             HHHHCCCHHHEEEEECCCCEEEEEEEECCCCEE
T ss_conf             999689978989999988705699998798789


No 10 
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.67  E-value=53  Score=12.61  Aligned_cols=25  Identities=36%  Similarity=0.504  Sum_probs=17.9

Q ss_pred             CHHHCCCCCCCCEEEEEE-----ECEEEEE
Q ss_conf             023205100243468886-----0367887
Q gi|255764517|r    6 NMEKLNFEQTKSVTYWAV-----GSKFVIP   30 (135)
Q Consensus         6 nM~~~NFEQtK~VtY~~~-----GS~FVIP   30 (135)
                      -|+|.|.|+-.+-.|-++     +..++||
T Consensus        36 Al~Khnl~~~~~~~Y~L~QvLp~dkEl~iP   65 (88)
T d1ef5a_          36 AMSKHNLESDPAEEYELVQVISEDKELVIP   65 (88)
T ss_dssp             HTTTTTCCCCSSSSEEEEEECSSSCCEESS
T ss_pred             HHHHHCCCCCCHHCEEEEEECCCCCEEECC
T ss_conf             999838997741041899985899769638


Done!