Query gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 135 No_of_seqs 2 out of 4 Neff 1.3 Searched_HMMs 13730 Date Wed Jun 1 11:40:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764517.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wjna_ d.15.1.1 (A:) Tubulin- 18.1 30 0.0022 14.1 2.3 43 54-96 41-84 (97) 2 d2a2ja1 b.45.1.1 (A:24-224) Py 16.9 23 0.0017 14.8 1.2 21 35-55 181-201 (201) 3 d1n4ka2 b.42.6.1 (A:236-435) I 15.2 30 0.0022 14.1 1.4 23 75-97 127-149 (200) 4 d1kafa_ d.199.1.1 (A:) DNA-bin 14.6 31 0.0023 14.0 1.4 27 73-99 52-83 (108) 5 d2piea1 b.26.1.2 (A:13-139) Ub 12.4 37 0.0027 13.6 1.2 58 23-80 28-96 (127) 6 d2o62a1 b.60.1.9 (A:133-269) U 9.4 55 0.004 12.5 2.2 51 18-70 79-131 (137) 7 d1vyia_ d.293.1.1 (A:) Phospho 9.0 43 0.0032 13.1 0.6 23 75-97 36-58 (111) 8 d1g6ga_ b.26.1.2 (A:) Phosphot 8.9 45 0.0033 13.0 0.7 31 19-49 36-69 (127) 9 d1q0qa3 d.81.1.3 (A:126-274) 1 8.8 57 0.0042 12.4 1.2 32 20-51 111-143 (149) 10 d1ef5a_ d.15.1.5 (A:) Rgl {Mou 8.7 53 0.0039 12.6 0.9 25 6-30 36-65 (88) No 1 >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Probab=18.11 E-value=30 Score=14.06 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=34.1 Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEE-EECCHHHHHHHCCCCC Q ss_conf 500233221210279985277878889-6357234554134441 Q gi|255764517|r 54 AISQDFDVDGLNALLTVNNREGDFIRI-FEGEKQTFKEYNSDSP 96 (135) Q Consensus 54 a~~~DF~VD~~~a~L~~~~r~~~~iRI-FEGEKQTFK~~N~~~~ 96 (135) -+++-|.+....--|....++....+| ++.+-+|+.+|+++.- T Consensus 41 ~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg 84 (97) T d1wjna_ 41 LLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG 84 (97) T ss_dssp HHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT T ss_pred HHHHHHCCCHHHEEEEECCCCCCCCCCEECCCCCCHHHCCCCCC T ss_conf 99998796968939996387777411100678767745058999 No 2 >d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Probab=16.90 E-value=23 Score=14.77 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=10.7 Q ss_pred CHHHEEEECCCCCCCEEEECC Q ss_conf 911311231578883100050 Q gi|255764517|r 35 DPSRIHAEVGYSDGRVQELAI 55 (135) Q Consensus 35 DPSRIHAEV~Y~DG~~~ELa~ 55 (135) .++|+|--+.|..+..+-|+| T Consensus 181 ~~~RlHdR~~y~~w~~~rL~P 201 (201) T d2a2ja1 181 RENRMHNRIRVANGRLERLQP 201 (201) T ss_dssp CTTSCCEEEEEETTEEEECCT T ss_pred CCCCCEEEEEECCCCEEECCC T ss_conf 998867379975983897188 No 3 >d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=15.21 E-value=30 Score=14.11 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=13.8 Q ss_pred CCEEEEEECCHHHHHHHCCCCCC Q ss_conf 87888963572345541344411 Q gi|255764517|r 75 GDFIRIFEGEKQTFKEYNSDSPR 97 (135) Q Consensus 75 ~~~iRIFEGEKQTFK~~N~~~~r 97 (135) .+.--||+.+.-|++.=++.+|+ T Consensus 127 ~d~~siF~l~ptt~~~~d~~V~~ 149 (200) T d1n4ka2 127 NDISSIFELDPTTLRGGDSLVPR 149 (200) T ss_dssp CSGGGCEEEEC------------ T ss_pred CCCHHEEEECCCCCCCCCEECCC T ss_conf 98134575045300047504366 No 4 >d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]} Probab=14.57 E-value=31 Score=13.99 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=21.6 Q ss_pred CCCCEEEEE-----ECCHHHHHHHCCCCCCCC Q ss_conf 778788896-----357234554134441111 Q gi|255764517|r 73 REGDFIRIF-----EGEKQTFKEYNSDSPRAP 99 (135) Q Consensus 73 r~~~~iRIF-----EGEKQTFK~~N~~~~rap 99 (135) +++...||| |-++|.|+..+.|+.-+| T Consensus 52 ~n~G~~RIfgYkm~e~~~q~Ft~lg~~vKi~~ 83 (108) T d1kafa_ 52 NNNGNMRIFGYKMMEHHIQKFTDIGMSCKIAK 83 (108) T ss_dssp CTTSEEEEEEESCCHHHHHHHHTTTCEEEECT T ss_pred ECCCCEEEEEEECCHHHHHHHHHCCCEEEECC T ss_conf 24881899865135989998864485389726 No 5 >d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Probab=12.38 E-value=37 Score=13.56 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=27.0 Q ss_pred EECEEEEEEECCCH------HHEEEECCC-CCCCE--EEECCCCCCCCCCCC--EEEEEECCCCCEEEE Q ss_conf 60367887631891------131123157-88831--000500233221210--279985277878889 Q gi|255764517|r 23 VGSKFVIPWDIKDP------SRIHAEVGY-SDGRV--QELAISQDFDVDGLN--ALLTVNNREGDFIRI 80 (135) Q Consensus 23 ~GS~FVIPW~iKDP------SRIHAEV~Y-~DG~~--~ELa~~~DF~VD~~~--a~L~~~~r~~~~iRI 80 (135) +|.-.--.+.+.+| ||.||.+.+ ++|.+ +.+.-..---|++.. ..-...-+.||-|+| T Consensus 28 iGR~~~~~~~l~~~~~~~~VSR~Ha~i~~~~~g~~~l~D~~S~NGt~lNg~~l~~~~~~~L~~GD~I~i 96 (127) T d2piea1 28 VGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQL 96 (127) T ss_dssp EESSSSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEE T ss_pred ECCCCCCCEEECCCCCCCCCCHHHEEEEECCCCEEEEEECCCCCCEEECCEECCCCCEEECCCCCEEEE T ss_conf 536787658978997566166236189997998599998777377279999946993069479999995 No 6 >d2o62a1 b.60.1.9 (A:133-269) Uncharacterized protein All1756 ortholog {Nostoc punctiforme [TaxId: 272131]} Probab=9.37 E-value=55 Score=12.52 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=32.5 Q ss_pred EEEEEEECEEEEEEECCCHHHEEEECCC--CCCCEEEECCCCCCCCCCCCEEEEE Q ss_conf 4688860367887631891131123157--8883100050023322121027998 Q gi|255764517|r 18 VTYWAVGSKFVIPWDIKDPSRIHAEVGY--SDGRVQELAISQDFDVDGLNALLTV 70 (135) Q Consensus 18 VtY~~~GS~FVIPW~iKDPSRIHAEV~Y--~DG~~~ELa~~~DF~VD~~~a~L~~ 70 (135) +.+---|+++--|..|.--+.-++|++. ..++-+-| -|-||..|.=.++++ T Consensus 79 ~~~lPdG~~s~gp~qv~~~~~F~~E~gwL~~~~rR~RL--Vr~yd~~G~~~s~tl 131 (137) T d2o62a1 79 VLLLPDGASATSPLKVQLRQPLFLEAGWLIQSDLRQRM--IRSYNDKGEWVSLTL 131 (137) T ss_dssp EEECGGGEEEEEESSCCTTSCEEEEEEEEEETTEEEEE--EEEECTTSBEEEEEE T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHH--HHEECCCCCEEEEEE T ss_conf 89958987533863115688746999942072665435--412288885878899 No 7 >d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]} Probab=8.97 E-value=43 Score=13.13 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=13.8 Q ss_pred CCEEEEEECCHHHHHHHCCCCCC Q ss_conf 87888963572345541344411 Q gi|255764517|r 75 GDFIRIFEGEKQTFKEYNSDSPR 97 (135) Q Consensus 75 ~~~iRIFEGEKQTFK~~N~~~~r 97 (135) |-|+--||--|-...|.--++.. T Consensus 36 GIFL~NFEQLKmNLDdIVk~ak~ 58 (111) T d1vyia_ 36 GIFLYNFEQLKMNLDDIVKEAKN 58 (111) T ss_dssp CEEEECGGGGCCCHHHHHHHHTT T ss_pred CEEEECHHHHHCCHHHHHHHHCC T ss_conf 46776189874568999998616 No 8 >d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=8.87 E-value=45 Score=13.02 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=18.1 Q ss_pred EEEEEECEEEEEEECC---CHHHEEEECCCCCCC Q ss_conf 6888603678876318---911311231578883 Q gi|255764517|r 19 TYWAVGSKFVIPWDIK---DPSRIHAEVGYSDGR 49 (135) Q Consensus 19 tY~~~GS~FVIPW~iK---DPSRIHAEV~Y~DG~ 49 (135) ..|.+|..--.-|.+. .-||.||++-+.++. T Consensus 36 ~~~~iGR~~~~d~~l~d~~~VSr~Ha~i~~~~~~ 69 (127) T d1g6ga_ 36 KVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG 69 (127) T ss_dssp EEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS T ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHEEECCCE T ss_conf 3389736844671689951450999870301647 No 9 >d1q0qa3 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Probab=8.76 E-value=57 Score=12.41 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=19.6 Q ss_pred EEEEECEE-EEEEECCCHHHEEEECCCCCCCEE Q ss_conf 88860367-887631891131123157888310 Q gi|255764517|r 20 YWAVGSKF-VIPWDIKDPSRIHAEVGYSDGRVQ 51 (135) Q Consensus 20 Y~~~GS~F-VIPW~iKDPSRIHAEV~Y~DG~~~ 51 (135) +|+|+-.+ -|---|.--|-||+-|.|.||.+- T Consensus 111 ~~LF~l~~~kI~v~IHpqSiiHs~V~f~DGs~~ 143 (149) T d1q0qa3 111 RWLFNASASQMEVLIHPQSVIHSMVRYQDGSVL 143 (149) T ss_dssp HHHHTCCGGGEEEEECTTCCEEEEEEETTSCEE T ss_pred HHHHCCCHHHEEEEECCCCEEEEEEEECCCCEE T ss_conf 999689978989999988705699998798789 No 10 >d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]} Probab=8.67 E-value=53 Score=12.61 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=17.9 Q ss_pred CHHHCCCCCCCCEEEEEE-----ECEEEEE Q ss_conf 023205100243468886-----0367887 Q gi|255764517|r 6 NMEKLNFEQTKSVTYWAV-----GSKFVIP 30 (135) Q Consensus 6 nM~~~NFEQtK~VtY~~~-----GS~FVIP 30 (135) -|+|.|.|+-.+-.|-++ +..++|| T Consensus 36 Al~Khnl~~~~~~~Y~L~QvLp~dkEl~iP 65 (88) T d1ef5a_ 36 AMSKHNLESDPAEEYELVQVISEDKELVIP 65 (88) T ss_dssp HTTTTTCCCCSSSSEEEEEECSSSCCEESS T ss_pred HHHHHCCCCCCHHCEEEEEECCCCCEEECC T ss_conf 999838997741041899985899769638 Done!