RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>gnl|CDD|36242 KOG1024, KOG1024, KOG1024, Receptor-like protein tyrosine kinase
           RYK/derailed [Signal transduction mechanisms].
          Length = 563

 Score = 25.7 bits (56), Expect = 3.6
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 47  DGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYN 92
           + R+QEL + +          L+   +EG F RI+ G  +    YN
Sbjct: 273 NRRLQELTVQRC------RVRLSCLLQEGTFGRIYRGIWREEDTYN 312


>gnl|CDD|145050 pfam01696, Adeno_E1B_55K, Adenovirus EB1 55K protein / large
          t-antigen.  This family consists of adenovirus E1B 55K
          protein or large t-antigen. E1B 55K binds p53 the
          tumour suppressor protein converting it from a
          transcriptional activator which responds to damaged DNA
          in to an unregulated repressor of genes with a p53
          binding site. This protects the virus against p53
          induced host antiviral responses and prevents apoptosis
          as induced by the adenovirus E1A protein. The E1B
          region of adenovirus encodes two proteins E1B 55K the
          large t-antigen as found in this family and E1B 19K
          pfam01691 the small t-antigen which is not found in
          this family; both of these proteins inhibit E1A induced
          apoptosis.
          Length = 387

 Score = 25.7 bits (57), Expect = 4.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 7  MEKLNFEQTKSVTYWAVGSKFVIPW-DIKDPSRIHAEVGYSDGRVQEL 53
          +EK +FEQ K  TYW        P  D+++  R HA+V     +   +
Sbjct: 39 LEKYSFEQIK--TYWLE------PGDDLEEAIRQHAKVALRPDKEYVI 78


>gnl|CDD|38581 KOG3371, KOG3371, KOG3371, Uncharacterized conserved protein
           [Function unknown].
          Length = 243

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 10/54 (18%)

Query: 31  WDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGE 84
           W + D   +H E G+       + +  D  +    AL TV N     + I EG 
Sbjct: 133 WSLDDKDPMHVENGF-------ITLKPD-KMTRSVALTTVMNTG--LVEIEEGT 176


>gnl|CDD|34711 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase
           [Transcription].
          Length = 1117

 Score = 25.4 bits (55), Expect = 5.3
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 73  REGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVE 119
            E    +    EK  +++     P   HN V        H +  G E
Sbjct: 376 DEFFSEQFKGHEKDAYEDARKKIPEQFHNAVHNKRSMTRHAKHKGAE 422


>gnl|CDD|32605 COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport
           and metabolism].
          Length = 346

 Score = 24.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 58  DFDVDGLNALLTVNNREGDFIRIFEGEKQT 87
           DF+++     L   N++ D I +FE +K+T
Sbjct: 295 DFNINPSGRFLIAANQKSDNITVFERDKET 324


>gnl|CDD|38114 KOG2903, KOG2903, KOG2903, Predicted glutathione S-transferase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 319

 Score = 24.9 bits (54), Expect = 7.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 70  VNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYP--LHNRLDGVETIVSD-LN 126
           VNN   + IR+F      F E+N  +           DLYP  L  ++D   + V D +N
Sbjct: 136 VNNESSEIIRMF---NSAFDEFNGIAEN------PVLDLYPSSLRAQIDETNSWVYDKIN 186

Query: 127 N 127
           N
Sbjct: 187 N 187


>gnl|CDD|144408 pfam00798, Arena_glycoprot, Arenavirus glycoprotein. 
          Length = 473

 Score = 24.9 bits (55), Expect = 7.9
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 12/60 (20%)

Query: 76  DFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNMKNRIQDL 135
           D +R+F+  K   K  N ++ +   NL+ +            + +++SD   MKN++++L
Sbjct: 299 DMLRLFDFNKNAIKTLNDET-KNALNLLTKT-----------INSLISDNLLMKNKLREL 346


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,580,016
Number of extensions: 73659
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 16
Length of query: 135
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,448,581
Effective search space: 226877631
Effective search space used: 226877631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.8 bits)