RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>3fe3_A MAP/microtubule affinity-regulating kinase 3;
           serine/threonine protein kinase, MARK;PAR-1, UBA
           domain;C-TAK1;P78;MARK3, alternative splicing; 1.90A
           {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A
           2r0i_A 2hak_A 3iec_A (A:1-95,A:269-328)
          Length = 155

 Score = 24.9 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 30  PWDIKDPSRIHAEV--GYSDGRVQELAISQDFD 60
             DI D  RI   V  GYS   +QE      +D
Sbjct: 111 ELDISDQKRIDIMVGMGYSQEEIQESLSKMKYD 143


>1npe_A Nidogen, entactin; glycoprotein, basement membrane,
           beta-propeller, EGF-like, structural protein; 2.30A {Mus
           musculus} (A:)
          Length = 267

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 3/28 (10%), Positives = 9/28 (32%)

Query: 31  WDIKDPSRIHAEVGYSDGRVQELAISQD 58
            D+     +     +   R+  + I+  
Sbjct: 234 MDLAISKEMDTFHPHKQTRLYGITIALS 261


>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A
          {Clostridium butyricum} (A:24-128,A:168-278)
          Length = 216

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 43 VGYSDGRVQELAISQDFDVDGLNALL-TVNNREGDFIRIFEGEKQTFKE 90
          VG      +   +  +F    L   L  +N R GD  +I E  K+  K+
Sbjct: 50 VGSLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISEESKEKLKD 98


>1u7i_A Hypothetical protein; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; HET: MSE; 1.40A {Pseudomonas aeruginosa
           PAO1} (A:1-75)
          Length = 75

 Score = 23.9 bits (52), Expect = 7.7
 Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 5/46 (10%)

Query: 79  RIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSD 124
            +F+  +    +        P   V +A       RL        D
Sbjct: 27  SLFDDAEILQIQRYGAEGPGPEGSVLKALF-----RLGDQSVHCID 67


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,001,385
Number of extensions: 40918
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 9
Length of query: 135
Length of database: 4,956,049
Length adjustment: 79
Effective length of query: 56
Effective length of database: 2,285,454
Effective search space: 127985424
Effective search space used: 127985424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)