RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.0 bits (79), Expect = 0.005
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 9/28 (32%)

Query: 84  EKQTFKE-------YNSDSPRAPHNLVK 104
           EKQ  K+       Y  DS  AP   +K
Sbjct: 18  EKQALKKLQASLKLYADDS--APALAIK 43



 Score = 25.3 bits (54), Expect = 4.1
 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)

Query: 33 IKDPSRIHAEVG-YSDGRVQELAI 55
          +K   ++ A +  Y+D     LAI
Sbjct: 22 LK---KLQASLKLYADDSAPALAI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.1 bits (65), Expect = 0.32
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 58  DFDVDGLNAL--LTVNNREGDFIRI 80
           DF   G + L  LT  N++G  +R+
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRV 527



 Score = 27.2 bits (60), Expect = 1.3
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 18  VTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQ-----DFDVDGLNAL 67
           VT   +G     P +++  S +    G+S G V  +AI++      F V    A+
Sbjct: 251 VTAKLLG---FTPGELR--SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300



 Score = 27.2 bits (60), Expect = 1.4
 Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 66/162 (40%)

Query: 7    MEKLNFEQTKSVTYWAVGSKFVIPWD----------------IKDPSRIHA--EVGYSDG 48
            MEK  FE  K        SK +IP D                + D   I +  EV +  G
Sbjct: 1739 MEKAAFEDLK--------SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG 1790

Query: 49   RVQELAISQD--------------------FDVDGLNALLT-VNNREGDFIRIFEGEKQT 87
               ++A+ +D                    F  + L  ++  V  R G  + I       
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV------ 1844

Query: 88   FKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNMK 129
               YN ++       V   DL  L       +T+ + LN +K
Sbjct: 1845 --NYNVEN----QQYVAAGDLRAL-------DTVTNVLNFIK 1873


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 28.6 bits (63), Expect = 0.52
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 44  GYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLV 103
           G+ D + +E    +D       ++L     E   IR+ E E   F  YN +       ++
Sbjct: 875 GWVDSKTKEPVDDKDVKAKYETSIL-----EHSGIRLIEPE--LFNGYNPEKKEMIQEVI 927

Query: 104 KEADLYPL 111
            E DL P 
Sbjct: 928 VEEDLEPF 935


>3na2_A Uncharacterized protein; beta-fold, metagenome, structural
           genomics, PSI-2, protein S initiative, midwest center
           for structural genomics; 2.29A {Leptospirillum rubarum}
          Length = 172

 Score = 26.3 bits (57), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 101 NLVKEADLYPLHNRLDGVETIVSDLNNMKN 130
           +L  E + + LH +L+ VET+V DL+   N
Sbjct: 71  SLTIEREDWHLHCKLETVETVVFDLSPKDN 100


>2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper
           protein, copper, electron transport, metal- binding,
           periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB:
           1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
          Length = 154

 Score = 26.0 bits (56), Expect = 2.9
 Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 68  LTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLV 103
             V++++   + I  G        N++     H+  
Sbjct: 53  FEVHDKKNPTLEIPAGATVDVTFINTN-KGFGHSFD 87


>1t6g_C Endo-1,4-beta-xylanase I; protein-protein complex, two
          beta-barrel domain structure, beta-jelly roll
          structure, hydrolase inhibitor; 1.80A {Aspergillus
          niger} SCOP: b.29.1.11 PDB: 1bk1_A 2qz2_A* 1ukr_A
          Length = 184

 Score = 25.4 bits (56), Expect = 4.4
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 17 SVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNALLTV 70
            TY      F + W+    S     +G++ G    +  S ++   G ++ L V
Sbjct: 16 DFTYDESAGTFSMYWEDGVSSDFVVGLGWTTGSSNAITYSAEYSASGSSSYLAV 69


>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome,
            procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo
            sapiens}
          Length = 1263

 Score = 24.8 bits (53), Expect = 7.0
 Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 19   TYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDV 61
                    ++  W++            +   ++++ +S DF  
Sbjct: 1196 KMLISAGGYIKWWNVVTGESSQTFYT-NGTNLKKIHVSPDFKT 1237


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,142,534
Number of extensions: 47822
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 16
Length of query: 135
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 53
Effective length of database: 3,705,222
Effective search space: 196376766
Effective search space used: 196376766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)