BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
(135 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 280 bits (716), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD
Sbjct: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
Query: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET
Sbjct: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
Query: 121 IVSDLNNMKNRIQDL 135
IVSDLNNMKNRIQDL
Sbjct: 121 IVSDLNNMKNRIQDL 135
>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 96.3 bits (238), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD +
Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
Query: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV
Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
Query: 123 SDL 125
+DL
Sbjct: 115 NDL 117
>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 264
Score = 26.6 bits (57), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 44 GYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEK----QTFKEYNSD 94
G S R +S+ + DGL ++ N++ D +RIFE K FK+Y +
Sbjct: 202 GLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGN 256
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 23.9 bits (50), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 28 VIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDG 63
+ D+KDP Y D R +E+ S +FD+ G
Sbjct: 549 IFKSDLKDPKSFAN--TYKDNRYKEIISSFNFDIHG 582
>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 495
Score = 23.9 bits (50), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 38 RIHAEVGYSDGRVQELAI 55
R+H VG++ GR Q ++I
Sbjct: 388 RVHVTVGWTSGRGQYISI 405
>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 267
Score = 22.3 bits (46), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 23 VGSKFVIPWDIKDPSRI 39
V S F+IP +++DPS +
Sbjct: 56 VDSDFMIPCNVEDPSSM 72
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 22.3 bits (46), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 46 SDGRVQELAISQDFDVDGLNALLTVNNREGD 76
+DGR ++ ++D+ D L T+N D
Sbjct: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130
>gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 152
Score = 21.6 bits (44), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 86 QTFKEYNSDSPRAPH 100
Q K+++ +SP APH
Sbjct: 14 QYIKDFSFESPNAPH 28
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 20.8 bits (42), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 117 GVETIVSDLNNMKNRIQDL 135
G+ETI + L+ ++ I+DL
Sbjct: 281 GIETISAGLSEPRDAIEDL 299
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,732
Number of Sequences: 1233
Number of extensions: 3193
Number of successful extensions: 12
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 328,796
effective HSP length: 65
effective length of query: 70
effective length of database: 248,651
effective search space: 17405570
effective search space used: 17405570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)