Query 537021.9.peg.1044_1
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Fri May 20 16:20:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1044.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q07_A Uncharacterized protein 7.2 72 0.003 15.0 -0.1 19 1-19 32-50 (306)
2 3ft1_A PHL P 3 allergen; beta- 6.7 1.2E+02 0.0051 13.9 0.8 11 6-16 9-19 (100)
3 2jnz_A PHL P 3 allergen; timot 6.1 1.5E+02 0.0061 13.6 1.0 12 6-17 20-31 (108)
4 3kyq_A YKT6, synaptobrevin hom 5.9 1.9E+02 0.0081 13.0 3.6 36 3-39 9-44 (199)
5 1fmh_A General control protein 5.8 1.5E+02 0.0062 13.5 0.9 14 23-36 14-27 (33)
6 3bw6_A Synaptobrevin homolog Y 5.6 2E+02 0.0085 12.9 3.2 36 2-38 11-46 (144)
7 3mud_A DNA repair protein XRCC 5.5 1.4E+02 0.0057 13.7 0.5 15 5-19 14-28 (175)
8 2gv5_C SFI1P; centrin, CDC31P, 5.0 2.2E+02 0.0093 12.7 1.3 18 21-38 44-62 (73)
9 2ftc_K 39S ribosomal protein L 3.3 2.4E+02 0.01 12.6 0.3 7 36-42 80-86 (98)
10 2hqh_E Restin; beta/BETA struc 3.2 2.4E+02 0.01 12.6 0.3 5 8-12 1-5 (26)
No 1
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=7.17 E-value=72 Score=14.99 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=13.4
Q ss_pred CEEEECCCCCCEEEECCEE
Q ss_conf 6887078987468650101
Q 537021.9.peg.1 1 LILLNSNGSKPYYLSTSYE 19 (42)
Q Consensus 1 lillnsngskpyylstsye 19 (42)
++++-...-|||+.|-||.
T Consensus 32 ~vllpcs~~KPy~~S~sh~ 50 (306)
T 2q07_A 32 VLLLPCTARKPYLTSRTHR 50 (306)
T ss_dssp EEEEECCSSSSGGGSHHHH
T ss_pred EEEEECCCCCCCCCCHHHH
T ss_conf 9996378899840387599
No 2
>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A
Probab=6.68 E-value=1.2e+02 Score=13.94 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=8.2
Q ss_pred CCCCCCEEEEC
Q ss_conf 78987468650
Q 537021.9.peg.1 6 SNGSKPYYLST 16 (42)
Q Consensus 6 sngskpyylst 16 (42)
..||.||||+-
T Consensus 9 ~~gSnp~~lav 19 (100)
T 3ft1_A 9 QKGSDPKKLVL 19 (100)
T ss_dssp CTTCBTTEEEE
T ss_pred ECCCCCCEEEE
T ss_conf 08999667999
No 3
>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}
Probab=6.14 E-value=1.5e+02 Score=13.57 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=8.4
Q ss_pred CCCCCCEEEECC
Q ss_conf 789874686501
Q 537021.9.peg.1 6 SNGSKPYYLSTS 17 (42)
Q Consensus 6 sngskpyylsts 17 (42)
..||.||||+-.
T Consensus 20 ~~GSnp~~lavl 31 (108)
T 2jnz_A 20 QKGSDPKKLVLD 31 (108)
T ss_dssp CTTCCSSEEEEE
T ss_pred CCCCCCCEEEEE
T ss_conf 289996679999
No 4
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasm, cytoplasmic vesicle, ER-golgi transport, golgi apparatus; HET: DPV; 2.44A {Rattus norvegicus}
Probab=5.94 E-value=1.9e+02 Score=13.02 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=25.7
Q ss_pred EEECCCCCCEEEECCEEHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8707898746865010121331021189999988764
Q 537021.9.peg.1 3 LLNSNGSKPYYLSTSYELEKISENYQLSKIVSLLFFL 39 (42)
Q Consensus 3 llnsngskpyylstsyelekisenyqlskivsllffl 39 (42)
++..+..+|..|+..|+|..++- +|-+.+-..+.|.
T Consensus 9 ~~~~~~~~~~~l~~~~dl~~f~~-fqr~~~~e~~~f~ 44 (199)
T 3kyq_A 9 VFYKGEPKAVLLKAAYDVSSFSF-FQRSSVQEFMTFT 44 (199)
T ss_dssp EEEECSSCEEEEEEEECCTTSCT-TTHHHHHHHHHHH
T ss_pred EEECCCCCCEEEEECCCCCCCCH-HHHHHHHHHHHHH
T ss_conf 99738997557310213442343-1398599999999
No 5
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=5.83 E-value=1.5e+02 Score=13.54 Aligned_cols=14 Identities=50% Similarity=0.624 Sum_probs=10.5
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 31021189999988
Q 537021.9.peg.1 23 ISENYQLSKIVSLL 36 (42)
Q Consensus 23 isenyqlskivsll 36 (42)
-.|||||..-|.-|
T Consensus 14 eaenyqleqevaql 27 (33)
T 1fmh_A 14 EAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99886899999999
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=5.61 E-value=2e+02 Score=12.92 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=24.2
Q ss_pred EEEECCCCCCEEEECCEEHHHHHCCCCHHHHHHHHHH
Q ss_conf 8870789874686501012133102118999998876
Q 537021.9.peg.1 2 ILLNSNGSKPYYLSTSYELEKISENYQLSKIVSLLFF 38 (42)
Q Consensus 2 illnsngskpyylstsyelekisenyqlskivsllff 38 (42)
.++..++.+|-.|+..++|..++ -+|-+.+-..+.|
T Consensus 11 ~v~~~~~~~~~~L~~~~dlssf~-~fqR~svkE~~~F 46 (144)
T 3bw6_A 11 GVFRSGGEKALELSEVKDLSQFG-FFERSSVGQFMTF 46 (144)
T ss_dssp EEEECCSSSCEEEEEEECCTTSC-TTTTTHHHHHHHH
T ss_pred EEEECCCCCCEEEEEEECCCCCC-EEEHHHHHHHHHH
T ss_conf 99972899867866330254346-0667769999999
No 7
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens}
Probab=5.52 E-value=1.4e+02 Score=13.71 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=9.8
Q ss_pred ECCCCCCEEEECCEE
Q ss_conf 078987468650101
Q 537021.9.peg.1 5 NSNGSKPYYLSTSYE 19 (42)
Q Consensus 5 nsngskpyylstsye 19 (42)
.|.-+.+|||.+|++
T Consensus 14 ~s~p~~~yFL~~sw~ 28 (175)
T 3mud_A 14 VSEPSITHFLQVSWE 28 (175)
T ss_dssp TTEEEEEEEEEEEES
T ss_pred CCCCCCEEEEEEEEE
T ss_conf 488983499998752
No 8
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell cycle; 3.00A {Saccharomyces cerevisiae}
Probab=5.00 E-value=2.2e+02 Score=12.75 Aligned_cols=18 Identities=50% Similarity=0.611 Sum_probs=11.9
Q ss_pred HHHH-CCCCHHHHHHHHHH
Q ss_conf 1331-02118999998876
Q 537021.9.peg.1 21 EKIS-ENYQLSKIVSLLFF 38 (42)
Q Consensus 21 ekis-enyqlskivsllff 38 (42)
..|| .||||.|.|---|-
T Consensus 44 qaiskrnyqlekmvlkkfr 62 (73)
T 2gv5_C 44 QAISKRNYQLEKMVLKKFR 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8887651589999999999
No 9
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=3.26 E-value=2.4e+02 Score=12.57 Aligned_cols=7 Identities=57% Similarity=1.137 Sum_probs=0.0
Q ss_pred HHHHHCC
Q ss_conf 8764159
Q 537021.9.peg.1 36 LFFLRDR 42 (42)
Q Consensus 36 lfflrdr 42 (42)
||+|||+
T Consensus 80 LyYLRd~ 86 (98)
T 2ftc_K 80 LLYLRDA 86 (98)
T ss_pred HHHHHCC
T ss_conf 0104438
No 10
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, protein binding; 1.80A {Homo sapiens}
Probab=3.23 E-value=2.4e+02 Score=12.60 Aligned_cols=5 Identities=80% Similarity=1.790 Sum_probs=0.0
Q ss_pred CCCCE
Q ss_conf 98746
Q 537021.9.peg.1 8 GSKPY 12 (42)
Q Consensus 8 gskpy 12 (42)
||.||
T Consensus 1 gsRPY 5 (26)
T 2hqh_E 1 GSRPY 5 (26)
T ss_dssp ---CE
T ss_pred CCCCH
T ss_conf 98851
Done!