Query 537021.9.peg.1044_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Fri May 20 16:19:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1044.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1zxoa1 c.55.1.5 (A:3-106) Hyp 7.2 25 0.0018 16.0 -1.3 35 4-38 24-61 (104) 2 d1whoa_ b.7.3.1 (A:) PHL P 2 { 6.4 74 0.0054 13.8 0.8 14 6-19 9-22 (94) 3 d1n10a1 b.7.3.1 (A:1146-1240) 4.9 1E+02 0.0076 13.2 0.8 14 6-19 8-21 (95) 4 d2q07a2 c.18.1.4 (A:244-393) U 4.8 77 0.0056 13.8 0.1 19 1-19 18-36 (150) 5 d1ik9a1 b.59.1.1 (A:1-117) XRC 4.2 1.3E+02 0.0097 12.7 1.0 13 7-19 10-25 (117) 6 d1y8aa1 c.108.1.24 (A:1-308) H 3.7 1.4E+02 0.01 12.6 0.7 11 9-19 97-107 (308) 7 d1ioua_ d.110.4.1 (A:) Synapto 3.0 2E+02 0.015 11.8 2.6 36 2-38 7-42 (140) 8 d1q8ca_ a.79.1.2 (A:) Hypothet 2.9 1.9E+02 0.014 11.9 0.7 10 31-40 13-22 (140) 9 d1a9xa3 c.30.1.1 (A:1-127) Car 2.8 1.7E+02 0.012 12.2 0.3 15 2-19 45-59 (127) 10 d1dpjb_ a.137.7.1 (B:) Protein 2.6 1.7E+02 0.013 12.2 0.3 12 20-31 3-14 (29) No 1 >d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=7.17 E-value=25 Score=15.98 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=23.4 Q ss_pred EECCCCCCEEEECCEEHHHHHCCCCHHH---HHHHHHH Q ss_conf 7078987468650101213310211899---9998876 Q 537021.9.peg.1 4 LNSNGSKPYYLSTSYELEKISENYQLSK---IVSLLFF 38 (42) Q Consensus 4 lnsngskpyylstsyelekisenyqlsk---ivsllff 38 (42) ...-|-.||+++...-.+.|.+|..+.. -|+-+|| T Consensus 24 ~~T~G~NP~~~s~~~i~~~l~~~~~~~~~~~~v~~V~F 61 (104) T d1zxoa1 24 LGTKGINPFFQSEEEIQQKLTASLLPQLPEGKFNAVYF 61 (104) T ss_dssp EEECCCCTTTSCSTTTTTTTTC-------------CEE T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCEEEE T ss_conf 87276076537999999999847210221155458999 No 2 >d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Probab=6.42 E-value=74 Score=13.84 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=9.5 Q ss_pred CCCCCCEEEECCEE Q ss_conf 78987468650101 Q 537021.9.peg.1 6 SNGSKPYYLSTSYE 19 (42) Q Consensus 6 sngskpyylstsye 19 (42) ..||.||||+..-+ T Consensus 9 ~~GSnp~~lav~v~ 22 (94) T d1whoa_ 9 EKGSNEKHLAVLVK 22 (94) T ss_dssp CTTCBTTEEEEEEE T ss_pred CCCCCCCEEEEEEE T ss_conf 89999457999999 No 3 >d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Probab=4.90 E-value=1e+02 Score=13.16 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=9.1 Q ss_pred CCCCCCEEEECCEE Q ss_conf 78987468650101 Q 537021.9.peg.1 6 SNGSKPYYLSTSYE 19 (42) Q Consensus 6 sngskpyylstsye 19 (42) ..||.||||+-.-+ T Consensus 8 ~~gsnp~~lav~v~ 21 (95) T d1n10a1 8 EKGSNPNYLALLVK 21 (95) T ss_dssp CTTCBTTEEEEEEE T ss_pred CCCCCCCEEEEEEE T ss_conf 89998656999999 No 4 >d2q07a2 c.18.1.4 (A:244-393) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=4.81 E-value=77 Score=13.76 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=14.9 Q ss_pred CEEEECCCCCCEEEECCEE Q ss_conf 6887078987468650101 Q 537021.9.peg.1 1 LILLNSNGSKPYYLSTSYE 19 (42) Q Consensus 1 lillnsngskpyylstsye 19 (42) ++||-...-|||.+|.|.. T Consensus 18 lvllPCSa~KPYs~S~SH~ 36 (150) T d2q07a2 18 VLLLPCTARKPYLTSRTHR 36 (150) T ss_dssp EEEEECCSSSSGGGSHHHH T ss_pred EEEEECCCCCCCCCCHHHH T ss_conf 8995366678876586699 No 5 >d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=4.24 E-value=1.3e+02 Score=12.66 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=9.5 Q ss_pred CCCCC---EEEECCEE Q ss_conf 89874---68650101 Q 537021.9.peg.1 7 NGSKP---YYLSTSYE 19 (42) Q Consensus 7 ngskp---yylstsye 19 (42) -+|.| |||-+|.+ T Consensus 10 ~~sep~~~YFL~vsw~ 25 (117) T d1ik9a1 10 LVSEPSITHFLQVSWE 25 (117) T ss_dssp ETTEEEEEEEEEEEES T ss_pred ECCCCCCEEEEEEEEE T ss_conf 6278982699999854 No 6 >d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=3.75 E-value=1.4e+02 Score=12.60 Aligned_cols=11 Identities=45% Similarity=0.594 Sum_probs=8.2 Q ss_pred CCCEEEECCEE Q ss_conf 87468650101 Q 537021.9.peg.1 9 SKPYYLSTSYE 19 (42) Q Consensus 9 skpyylstsye 19 (42) -.||-.||||+ T Consensus 97 m~~yIvSTSY~ 107 (308) T d1y8aa1 97 WTPVVISTSYT 107 (308) T ss_dssp CEEEEEEEEEH T ss_pred CCCEEEECCHH T ss_conf 88479853589 No 7 >d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=2.96 E-value=2e+02 Score=11.83 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=24.8 Q ss_pred EEEECCCCCCEEEECCEEHHHHHCCCCHHHHHHHHHH Q ss_conf 8870789874686501012133102118999998876 Q 537021.9.peg.1 2 ILLNSNGSKPYYLSTSYELEKISENYQLSKIVSLLFF 38 (42) Q Consensus 2 illnsngskpyylstsyelekisenyqlskivsllff 38 (42) .++..++.+|-.|+..++|..++ -+|-+.+-..+.| T Consensus 7 ~v~~~~~~~~~~L~~a~Dlssf~-ffqR~svkE~~~f 42 (140) T d1ioua_ 7 GVFRSGGEKALELSEVKDLSQFG-FFERSSVGQFMTF 42 (140) T ss_dssp EEEEEETTEEEEEEEEECCSSCC-TTHHHHHHHHHHH T ss_pred EEEECCCCCCEEEEEECCCCCCC-EEEHHHHHHHHHH T ss_conf 99972899847875320343346-0556759999999 No 8 >d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]} Probab=2.87 E-value=1.9e+02 Score=11.92 Aligned_cols=10 Identities=70% Similarity=0.936 Sum_probs=5.0 Q ss_pred HHHHHHHHHH Q ss_conf 9999887641 Q 537021.9.peg.1 31 KIVSLLFFLR 40 (42) Q Consensus 31 kivsllfflr 40 (42) -|.++||||. T Consensus 13 fif~~lfflp 22 (140) T d1q8ca_ 13 FIFSLLFFLP 22 (140) T ss_dssp HHHHHGGGCC T ss_pred HHHHHHHHCC T ss_conf 9999999674 No 9 >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} Probab=2.76 E-value=1.7e+02 Score=12.23 Aligned_cols=15 Identities=47% Similarity=0.468 Sum_probs=8.7 Q ss_pred EEEECCCCCCEEEECCEE Q ss_conf 887078987468650101 Q 537021.9.peg.1 2 ILLNSNGSKPYYLSTSYE 19 (42) Q Consensus 2 illnsngskpyylstsye 19 (42) |+.|+| |.-.||.|+ T Consensus 45 iliN~N---P~TVstd~d 59 (127) T d1a9xa3 45 INVNSN---PATIMTDPE 59 (127) T ss_dssp EEECSC---TTCGGGCGG T ss_pred EEECCC---HHHHHCCHH T ss_conf 984586---675315865 No 10 >d1dpjb_ a.137.7.1 (B:) Proteinase A inhibitor IA3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=2.65 E-value=1.7e+02 Score=12.16 Aligned_cols=12 Identities=50% Similarity=0.570 Sum_probs=8.6 Q ss_pred HHHHHCCCCHHH Q ss_conf 213310211899 Q 537021.9.peg.1 20 LEKISENYQLSK 31 (42) Q Consensus 20 lekisenyqlsk 31 (42) -.|+||-+|-|| T Consensus 3 qqkvseifqssk 14 (29) T d1dpjb_ 3 QQKVSEIFQSSK 14 (29) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 889999999769 Done!