RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.1044_1
         (42 letters)



>gnl|CDD|182516 PRK10523, PRK10523, lipoprotein involved with copper homeostasis
           and adhesion; Provisional.
          Length = 234

 Score = 24.6 bits (54), Expect = 5.5
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 9/45 (20%)

Query: 1   LILLNSNGSKPYYLSTSYELEKISE---------NYQLSKIVSLL 36
           L+L +S G K YY +    LE +           NY L  + S L
Sbjct: 98  LVLTDSKGEKSYYRAKGDALEMLDREGNPIESQLNYTLEPVQSPL 142


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.364 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 613,821
Number of extensions: 20383
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 3
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)