RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.1044_1 (42 letters) >gnl|CDD|182516 PRK10523, PRK10523, lipoprotein involved with copper homeostasis and adhesion; Provisional. Length = 234 Score = 24.6 bits (54), Expect = 5.5 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 9/45 (20%) Query: 1 LILLNSNGSKPYYLSTSYELEKISE---------NYQLSKIVSLL 36 L+L +S G K YY + LE + NY L + S L Sbjct: 98 LVLTDSKGEKSYYRAKGDALEMLDREGNPIESQLNYTLEPVQSPL 142 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.137 0.364 Gapped Lambda K H 0.267 0.0697 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 613,821 Number of extensions: 20383 Number of successful extensions: 39 Number of sequences better than 10.0: 1 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 3 Length of query: 42 Length of database: 5,994,473 Length adjustment: 16 Effective length of query: 26 Effective length of database: 5,648,745 Effective search space: 146867370 Effective search space used: 146867370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.1 bits)