RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1044_1
         (42 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 23.7 bits (51), Expect = 9.6
 Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 6/26 (23%)

Query: 15  STSYELEKISENYQLS-KIVSLLFFL 39
           + S+E       +    K +++LFF+
Sbjct: 286 TDSWE-----SFFVSVRKAITVLFFI 306


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.137    0.364 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 308,132
Number of extensions: 7087
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 3
Length of query: 42
Length of database: 5,693,230
Length adjustment: 15
Effective length of query: 27
Effective length of database: 5,329,570
Effective search space: 143898390
Effective search space used: 143898390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)