Query 537021.9.peg.1058_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Wed May 25 08:29:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1058.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam09970 DUF2204 Conserved Ar 34.1 23 0.00059 18.5 1.5 27 9-36 154-180 (184)
2 TIGR02379 ECA_wecE TDP-4-keto- 12.9 74 0.0019 16.1 0.6 13 2-14 67-79 (376)
3 pfam06763 Minor_tail_Z Prophag 12.2 43 0.0011 17.2 -0.8 23 6-28 43-65 (183)
4 PRK08359 transcription factor; 10.4 81 0.0021 15.9 0.1 11 2-12 158-168 (175)
5 pfam06625 DUF1151 Protein of u 10.2 59 0.0015 16.6 -0.7 13 6-18 11-23 (122)
6 KOG0450 consensus 9.5 67 0.0017 16.3 -0.6 31 6-36 282-314 (1017)
7 pfam01325 Fe_dep_repress Iron 8.4 2.1E+02 0.0053 14.1 1.5 24 11-34 21-44 (58)
8 TIGR02280 PaaB1 phenylacetate 8.4 1.4E+02 0.0034 14.9 0.6 15 14-28 86-100 (259)
9 PRK12372 ribonuclease III; Rev 8.2 1.1E+02 0.0029 15.3 0.1 29 1-35 37-68 (425)
10 COG1510 Predicted transcriptio 7.8 2.3E+02 0.0058 13.9 1.5 18 16-33 47-64 (177)
No 1
>pfam09970 DUF2204 Conserved Archaeal protein (DUF2204). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=34.05 E-value=23 Score=18.48 Aligned_cols=27 Identities=48% Similarity=0.687 Sum_probs=22.4
Q ss_pred EECHHHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 2313999853310367006676786533
Q 537021.9.peg.1 9 VIIPKKLIRRSASLSKPSISEGIKKRIR 36 (37)
Q Consensus 9 viipkklirrsaslskpsisegikkrir 36 (37)
.-|-+++|++.+.+- |--||+|++|+|
T Consensus 154 i~id~~~ik~~ie~f-pEe~e~I~~RLr 180 (184)
T pfam09970 154 IKIDKRLIKEHIELF-PEESESIKKRLR 180 (184)
T ss_pred CCCCHHHHHHHHHHC-CCCCHHHHHHHH
T ss_conf 522699999999867-642289999998
No 2
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase; InterPro: IPR012749 This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family..
Probab=12.93 E-value=74 Score=16.12 Aligned_cols=13 Identities=46% Similarity=0.815 Sum_probs=8.9
Q ss_pred CCCCCCCEECHHH
Q ss_conf 4102571231399
Q 537021.9.peg.1 2 EFTLGDEVIIPKK 14 (37)
Q Consensus 2 eftlgdeviipkk 14 (37)
...-|||||.|--
T Consensus 67 Di~~GDEVIMPSy 79 (376)
T TIGR02379 67 DIQPGDEVIMPSY 79 (376)
T ss_pred CCCCCCEEECCCC
T ss_conf 0468883675751
No 3
>pfam06763 Minor_tail_Z Prophage minor tail protein Z (GPZ). This family consists of several prophage minor tail protein Z like sequences from Escherichia coli, Salmonella typhimurium and Lambda-like bacteriophages.
Probab=12.19 E-value=43 Score=17.21 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=17.9
Q ss_pred CCCEECHHHHHHHHHCCCCCCHH
Q ss_conf 57123139998533103670066
Q 537021.9.peg.1 6 GDEVIIPKKLIRRSASLSKPSIS 28 (37)
Q Consensus 6 gdeviipkklirrsaslskpsis 28 (37)
..|+-||.|+||.-+.+.|.+-+
T Consensus 43 Ake~~vp~K~IR~R~rl~KAt~~ 65 (183)
T pfam06763 43 ARETGVPRKLVRQRARLKRATAD 65 (183)
T ss_pred HHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 88709848999877853205678
No 4
>PRK08359 transcription factor; Validated
Probab=10.43 E-value=81 Score=15.95 Aligned_cols=11 Identities=55% Similarity=0.486 Sum_probs=5.0
Q ss_pred CCCCCCCEECH
Q ss_conf 41025712313
Q 537021.9.peg.1 2 EFTLGDEVIIP 12 (37)
Q Consensus 2 eftlgdeviip 12 (37)
++||||-|-|-
T Consensus 158 ~~TLGDvv~IK 168 (175)
T PRK08359 158 EPTLGDIARIK 168 (175)
T ss_pred CCCCCCEEEEE
T ss_conf 86661434555
No 5
>pfam06625 DUF1151 Protein of unknown function (DUF1151). This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=10.18 E-value=59 Score=16.60 Aligned_cols=13 Identities=54% Similarity=0.968 Sum_probs=10.4
Q ss_pred CCCEECHHHHHHH
Q ss_conf 5712313999853
Q 537021.9.peg.1 6 GDEVIIPKKLIRR 18 (37)
Q Consensus 6 gdeviipkklirr 18 (37)
.|+.|.||||+.-
T Consensus 11 ~~~LI~PkKL~NP 23 (122)
T pfam06625 11 SDELIVPKKLLNP 23 (122)
T ss_pred CCCCCCCCCCCCH
T ss_conf 8444057445860
No 6
>KOG0450 consensus
Probab=9.51 E-value=67 Score=16.34 Aligned_cols=31 Identities=48% Similarity=0.662 Sum_probs=22.5
Q ss_pred CCCEECH--HHHHHHHHCCCCCCHHHHHHHHHC
Q ss_conf 5712313--999853310367006676786533
Q 537021.9.peg.1 6 GDEVIIP--KKLIRRSASLSKPSISEGIKKRIR 36 (37)
Q Consensus 6 gdeviip--kklirrsaslskpsisegikkrir 36 (37)
|-|+.|| |.+|.||+.|.--+|--|.-.|-|
T Consensus 282 GcE~lIP~mK~iiDrS~elGVe~iviGMpHRGR 314 (1017)
T KOG0450 282 GCEVLIPAMKTIIDRSSELGVESIVIGMPHRGR 314 (1017)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCH
T ss_conf 325450678988623544180215733776532
No 7
>pfam01325 Fe_dep_repress Iron dependent repressor, N-terminal DNA binding domain. This family includes the Diphtheria toxin repressor. DNA binding is through a helix-turn-helix motif.
Probab=8.40 E-value=2.1e+02 Score=14.06 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=18.1
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 139998533103670066767865
Q 537021.9.peg.1 11 IPKKLIRRSASLSKPSISEGIKKR 34 (37)
Q Consensus 11 ipkklirrsaslskpsisegikkr 34 (37)
+.-+-|-+.-..|.||.++-+||-
T Consensus 21 v~~~~iA~~L~Vs~~SVt~mlkkL 44 (58)
T pfam01325 21 VKTKDLAERLNVSPSTVSEMLKKL 44 (58)
T ss_pred EEHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 129999999599925299999999
No 8
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=8.38 E-value=1.4e+02 Score=14.91 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=12.8
Q ss_pred HHHHHHHCCCCCCHH
Q ss_conf 998533103670066
Q 537021.9.peg.1 14 KLIRRSASLSKPSIS 28 (37)
Q Consensus 14 klirrsaslskpsis 28 (37)
-|+||-++|.||-|.
T Consensus 86 PLvRrL~~Lp~PVv~ 100 (259)
T TIGR02280 86 PLVRRLRALPKPVVC 100 (259)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 489999726997798
No 9
>PRK12372 ribonuclease III; Reviewed
Probab=8.18 E-value=1.1e+02 Score=15.26 Aligned_cols=29 Identities=41% Similarity=0.644 Sum_probs=12.2
Q ss_pred CCCCCCCCE---ECHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 941025712---31399985331036700667678653
Q 537021.9.peg.1 1 LEFTLGDEV---IIPKKLIRRSASLSKPSISEGIKKRI 35 (37)
Q Consensus 1 leftlgdev---iipkklirrsaslskpsisegikkri 35 (37)
||| |||-| +|-..|.++. |..+||---|+
T Consensus 37 LEF-LGDAVLglvIae~Ly~~f-----P~~~EG~LSrl 68 (425)
T PRK12372 37 LEF-LGDSVLNCAVAALLFQRF-----GKLDEGDLSRV 68 (425)
T ss_pred HHC-CHHHHHHHHHHHHHHHHC-----CCCCHHHHHHH
T ss_conf 222-059999999999999878-----89885478999
No 10
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=7.80 E-value=2.3e+02 Score=13.87 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 853310367006676786
Q 537021.9.peg.1 16 IRRSASLSKPSISEGIKK 33 (37)
Q Consensus 16 irrsaslskpsisegikk 33 (37)
|+....+||+++|-|+|+
T Consensus 47 i~E~lg~Sks~vS~~lkk 64 (177)
T COG1510 47 IAEALGMSKSNVSMGLKK 64 (177)
T ss_pred HHHHHCCCCCHHHHHHHH
T ss_conf 999977780128899999
Done!